Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005326

Physical Location & Seq

Genomic Coordinates Reverse (-)

60431182 .. 60434354

Gene Structure 3173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00267390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGAGAGGGCAACCGGAAAGGTGATCACTTGCAAAGCTGCTGTTGTTTGGGGTCCTGAGGAGCCTTTTGTGATGGAACAAGTTCAAGTTGACCCGCCGCAGAAACTGGAGGTCCGAGTCAAGATCCTCTTCACCTCAATCTGTCACACTGATCTTAGTGCTTGGAAAGGAGAGAATGAAGCTCAACGAGCGTTTCCTAGAATTCTAGGTCATGAAGCAGCCGGAATTGTTGAGAGCGTTGGTGAAGGTGTGACAGACATGAAAGAAGGGGATCATGTGATCCCTATTGTCAACGGAGAGTGCGGTTACTGCATCTGCTGCAGGCATCAGAAAACTAACATTTGCAACAACTTTGGAGTAAACCCAATGAAGAGGGTGATGAACAGCGACGGTAAAACAAGCGAGTACACAGTTCTTGAGTCCGCTTGTGTTGTCAAGATTGACTCGGAAGCTCCCCTCAAGAAGATGACGTTGCTCAGTTGCGGTGCTTCAACTGGAGTTGGGGCTGCATGGAATACTGCTGATGTTCAACCTGGCTCAACTGTCGCCATTTTTGGTTTAGGTACCCTTGGACTTGCCGTTGCTGAAGGAGCCAAAGCTAGAGGAGCATCTAAAATAATTGGTGTTGACATGAACCCTAATAAATTCATCAAAGGCCAAGCAATGGGAGTCACAGATTTCATAAACCCCTGCGACCCAGGAAAGCCTTTGCATGAGAGAATCAGGGAAATAACAGAAGGAGGTGTGGACTATAGCTTTGAGTGTGTAGGAAACTCCGATGTTCTCCGGGAAGCCTTTCTTTCCACACATGAGGGATGGGGGTGTACTGTGATATTGGGAATTCATGCAACACCAAAAATGCTTCCCCTCCATCCAATGGAGTTGTTTCATGGTCGAGGAATTATTGGATCTGTGTTTGGAGGCTTCAAAGGGAAGAGCCAACTCCCCCGTTTTGCCAAAGAATGCATGCAAGGGGTGGTCAATTTAGACGACTTCATAACACATGAGCTTCCCTTCGAGAAGATAAATGATGCGTTTAAGTTGCTCGTTGAAGGCCAGTCACTGAGATGCGTTCTGCACCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00625 ko00626 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00071 map00350 map00625 map00626 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

361

Amino Acids

39.04

Weight (kDa)

6.02

Isoelectric Point (pI)

23.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	37 - 148	5.1e-24	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	190 - 312	1.2e-21	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32780 AT1G64710 AT1G64710 AT1G64710
fragaria_vesca	FvH4_5g10640 FvH4_5g10640 FvH4_5g10640
malus_domestica	MD06G1121600.v1.1
prunus_persica	Prupe.5G132300_v2.0.a1
pyrus_communis	pycom06g11270
rosa_chinensis	RchiOBHm_Chr7g0187491 RchiOBHm_Chr7g0187501
rosa_laevigata	RLG00000004776 RLG00000004777
rosa_multiflora	Rmu_sc0001230.1_g000002 Rmu_sc0019127.1_g000001
rosa_roxburghii	Rroxscaffold_3G00267380 Rroxscaffold_3G00267390
rosa_rugosa	Rorug06G0482000
rosa_samantha	Rh7AG086500 Rh7AG086700 Rh7BG088100 Rh7BG088200 Rh7CG087400 Rh7CG087500 Rh7DG089000 Rh7DG089100
rosa_wichuraiana	Rw7G007630 Rw7G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	563
AccB1I	GGYRCC	1 cut(s)	563
AccB7I	CCANNNNNTGG	2 cut(s)	664, 877
AciI	CCGC	5 cut(s)	95, 98, 303, 423, 483
AclWI	GGATC	4 cut(s)	118, 274, 279, 916
AcsI	RAATTY	3 cut(s)	201, 644, 840
AcuI	CTGAAG	1 cut(s)	606
AfaI	GTAC	3 cut(s)	407, 565, 826
AfiI	CCNNNNNNNGG	2 cut(s)	664, 877
AgsI	TTSAA	5 cut(s)	86, 492, 530, 928, 1052
AjnI	CCWGG	2 cut(s)	532, 697
AluBI	AGCT	6 cut(s)	38, 182, 452, 599, 756, 1009
AluI	AGCT	6 cut(s)	38, 182, 452, 599, 756, 1009
AlwI	GGATC	4 cut(s)	118, 274, 279, 916
AlwNI	CAGNNNCTG	2 cut(s)	106, 1063
AoxI	GGCC	2 cut(s)	655, 1054
ApeKI	GCWGC	4 cut(s)	38, 218, 318, 506
ApoI	RAATTY	3 cut(s)	201, 644, 840
ArsI	GACNNNNNNTTYG	2 cut(s)	740, 772
Asp700I	GAANNNNTTC	2 cut(s)	81, 795
Asp718I	GGTACC	1 cut(s)	563
AspS9I	GGNCC	2 cut(s)	53, 112
AsuC2I	CCSGG	1 cut(s)	788
AsuHPI	GGTGA	4 cut(s)	34, 124, 254, 388
AvaII	GGWCC	2 cut(s)	53, 112
AxyI	CCTNAGG	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	563
BbvI	GCAGC	4 cut(s)	25, 230, 305, 493
BccI	CCATC	3 cut(s)	67, 810, 879
BceAI	ACGGC	1 cut(s)	563
BciT130I	CCWGG	2 cut(s)	534, 699
BclI	TGATCA	1 cut(s)	24
BcnI	CCSGG	1 cut(s)	788
BfaI	CTAG	3 cut(s)	198, 206, 600
BfmI	CTRYAG	2 cut(s)	319, 751
BisI	GCNGC	5 cut(s)	39, 98, 219, 319, 507
BlsI	GCNGC	5 cut(s)	40, 99, 220, 320, 508
Bme1390I	CCNGG	3 cut(s)	534, 699, 788
Bme18I	GGWCC	2 cut(s)	53, 112
BmgT120I	GGNCC	2 cut(s)	53, 112
BmiI	GGNNCC	4 cut(s)	54, 63, 565, 592
BmrFI	CCNGG	3 cut(s)	534, 699, 788
BmsI	GCATC	5 cut(s)	321, 334, 617, 1021, 1058
BpmI	CTGGAG	2 cut(s)	128, 516
BpuEI	CTTGAG	2 cut(s)	437, 443
BpuMI	CCSGG	1 cut(s)	788
BsaJI	CCNNGG	2 cut(s)	568, 697
BsaWI	WCCGGW	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	2 cut(s)	664, 877
Bse1I	ACTGG	3 cut(s)	111, 499, 1057
Bse21I	CCTNAGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	669
BseBI	CCWGG	2 cut(s)	534, 699
BseDI	CCNNGG	2 cut(s)	568, 697
BseGI	GGATG	2 cut(s)	821, 871
BseLI	CCNNNNNNNGG	2 cut(s)	664, 877
BseMI	GCAATG	1 cut(s)	669
BseMII	CTCAG	3 cut(s)	48, 490, 1055
BseNI	ACTGG	3 cut(s)	111, 499, 1057
BseRI	GAGGAG	2 cut(s)	74, 618
BseXI	GCAGC	4 cut(s)	25, 230, 305, 493
BsgI	GTGCAG	1 cut(s)	1061
BshFI	GGCC	2 cut(s)	657, 1056
BshNI	GGYRCC	1 cut(s)	563
BsiSI	CCGG	3 cut(s)	15, 222, 787
BslI	CCNNNNNNNGG	2 cut(s)	664, 877
BsmI	GAATGC	1 cut(s)	968
BsnI	GGCC	2 cut(s)	657, 1056
Bsp143I	GATC	6 cut(s)	24, 123, 151, 271, 279, 908
BspACI	CCGC	5 cut(s)	95, 98, 303, 423, 483
BspANI	GGCC	2 cut(s)	657, 1056
BspCNI	CTCAG	3 cut(s)	49, 489, 1056
BspHI	TCATGA	1 cut(s)	211
BspLI	GGNNCC	4 cut(s)	54, 63, 565, 592
BspMAI	CTGCAG	1 cut(s)	323
BspPI	GGATC	4 cut(s)	118, 274, 279, 916
BspQI	GCTCTTC	1 cut(s)	929
BspT107I	GGYRCC	1 cut(s)	563
BsrDI	GCAATG	1 cut(s)	669
BsrI	ACTGG	3 cut(s)	111, 499, 1057
BssECI	CCNNGG	2 cut(s)	568, 697
BssMI	GATC	6 cut(s)	24, 123, 151, 271, 279, 908
BssT1I	CCWWGG	1 cut(s)	568
Bst2UI	CCWGG	2 cut(s)	534, 699
Bst4CI	ACNGT	4 cut(s)	392, 412, 544, 829
Bst6I	CTCTTC	3 cut(s)	134, 365, 929
BstAPI	GCANNNNNTGC	1 cut(s)	318
BstC8I	GCNNGC	2 cut(s)	323, 968
BstDEI	CTNAG	4 cut(s)	57, 155, 476, 1064
BstF5I	GGATG	2 cut(s)	821, 871
BstKTI	GATC	6 cut(s)	27, 126, 154, 274, 282, 911
BstMBI	GATC	6 cut(s)	24, 123, 151, 271, 279, 908
BstMWI	GCNNNNNNNGC	5 cut(s)	188, 309, 318, 590, 605
BstNI	CCWGG	2 cut(s)	534, 699
BstNSI	RCATGY	1 cut(s)	970
BstSCI	CCNGG	3 cut(s)	532, 697, 786
BstSFI	CTRYAG	2 cut(s)	319, 751
BstV1I	GCAGC	4 cut(s)	25, 230, 305, 493
BstX2I	RGATCY	2 cut(s)	123, 908
BstYI	RGATCY	2 cut(s)	123, 908
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	657, 1056
BtsCI	GGATG	2 cut(s)	821, 871
BtsIMutI	CAGTG	2 cut(s)	147, 1061
Cac8I	GCNNGC	2 cut(s)	323, 968
CaiI	CAGNNNCTG	2 cut(s)	106, 1063
CciI	TCATGA	1 cut(s)	211
Cfr13I	GGNCC	2 cut(s)	53, 112
Csp6I	GTAC	3 cut(s)	406, 564, 825
CviQI	GTAC	3 cut(s)	406, 564, 825
DdeI	CTNAG	4 cut(s)	57, 155, 476, 1064
DpnI	GATC	6 cut(s)	26, 125, 153, 273, 281, 910
DpnII	GATC	6 cut(s)	24, 123, 151, 271, 279, 908
Eam1104I	CTCTTC	3 cut(s)	134, 365, 929
EarI	CTCTTC	3 cut(s)	134, 365, 929
Eco130I	CCWWGG	1 cut(s)	568
Eco47I	GGWCC	2 cut(s)	53, 112
Eco57I	CTGAAG	1 cut(s)	606
Eco81I	CCTNAGG	1 cut(s)	57
EcoO109I	RGGNCCY	1 cut(s)	53
EcoRI	GAATTC	2 cut(s)	201, 840
EcoRII	CCWGG	2 cut(s)	532, 697
EcoT14I	CCWWGG	1 cut(s)	568
EcoT22I	ATGCAT	1 cut(s)	968
ErhI	CCWWGG	1 cut(s)	568
FalI	AAGNNNNNCTT	4 cut(s)	113, 145, 783, 815
FauI	CCCGC	1 cut(s)	102
FbaI	TGATCA	1 cut(s)	24
Fnu4HI	GCNGC	5 cut(s)	39, 98, 219, 319, 507
FokI	GGATG	2 cut(s)	828, 858
Fsp4HI	GCNGC	5 cut(s)	39, 98, 219, 319, 507
FspBI	CTAG	3 cut(s)	198, 206, 600
GluI	GCNGC	5 cut(s)	39, 98, 219, 319, 507
GsuI	CTGGAG	2 cut(s)	128, 516
HaeIII	GGCC	2 cut(s)	657, 1056
HapII	CCGG	3 cut(s)	15, 222, 787
HincII	GTYRAC	3 cut(s)	91, 292, 628
HindII	GTYRAC	3 cut(s)	91, 292, 628
HinfI	GANTC	5 cut(s)	117, 419, 443, 669, 720
HpaII	CCGG	3 cut(s)	15, 222, 787
HphI	GGTGA	4 cut(s)	34, 124, 254, 388
Hpy166II	GTNNAC	7 cut(s)	91, 292, 361, 408, 628, 748, 825
Hpy188I	TCNGA	4 cut(s)	116, 330, 448, 778
Hpy188III	TCNNGA	7 cut(s)	56, 121, 212, 416, 436, 460, 1018
Hpy8I	GTNNAC	7 cut(s)	91, 292, 361, 408, 628, 748, 825
Hpy99I	CGWCG	1 cut(s)	392
HpyAV	CCTTC	6 cut(s)	239, 260, 581, 731, 1024, 1046
HpyCH4III	ACNGT	4 cut(s)	392, 412, 544, 829
HpyCH4IV	ACGT	1 cut(s)	470
HpyF10VI	GCNNNNNNNGC	5 cut(s)	188, 309, 318, 590, 605
HpyF3I	CTNAG	4 cut(s)	57, 155, 476, 1064
HpySE526I	ACGT	1 cut(s)	470
KpnI	GGTACC	1 cut(s)	567
Ksp22I	TGATCA	1 cut(s)	24
Kzo9I	GATC	6 cut(s)	24, 123, 151, 271, 279, 908
LguI	GCTCTTC	1 cut(s)	929
LmnI	GCTCC	4 cut(s)	61, 457, 590, 605
Lsp1109I	GCAGC	4 cut(s)	25, 230, 305, 493
LweI	GCATC	5 cut(s)	321, 334, 617, 1021, 1058
MaeI	CTAG	3 cut(s)	198, 206, 600
MaeII	ACGT	1 cut(s)	470
MaeIII	GTNAC	5 cut(s)	143, 250, 305, 670, 1059
MalI	GATC	6 cut(s)	26, 125, 153, 273, 281, 910
MboI	GATC	6 cut(s)	24, 123, 151, 271, 279, 908
MboII	GAAGA	5 cut(s)	121, 382, 475, 946, 1033
MflI	RGATCY	2 cut(s)	123, 908
MluCI	AATT	7 cut(s)	201, 225, 618, 644, 840, 900, 982
MlyI	GAGTC	4 cut(s)	126, 428, 437, 678
Mph1103I	ATGCAT	1 cut(s)	968
MroXI	GAANNNNTTC	2 cut(s)	81, 795
MseI	TTAA	1 cut(s)	1038
MslI	CAYNNNNRTG	1 cut(s)	1066
MspI	CCGG	3 cut(s)	15, 222, 787
MspR9I	CCNGG	3 cut(s)	534, 699, 788
Mva1269I	GAATGC	1 cut(s)	968
MvaI	CCWGG	2 cut(s)	534, 699
MwoI	GCNNNNNNNGC	5 cut(s)	188, 309, 318, 590, 605
NciI	CCSGG	1 cut(s)	788
NdeII	GATC	6 cut(s)	24, 123, 151, 271, 279, 908
NlaIV	GGNNCC	4 cut(s)	54, 63, 565, 592
NmuCI	GTSAC	4 cut(s)	143, 250, 670, 1059
NsiI	ATGCAT	1 cut(s)	968
NspI	RCATGY	1 cut(s)	970
PaeI	GCATGC	1 cut(s)	970
PagI	TCATGA	1 cut(s)	211
PciSI	GCTCTTC	1 cut(s)	929
PctI	GAATGC	1 cut(s)	968
PdmI	GAANNNNTTC	2 cut(s)	81, 795
PfeI	GAWTC	1 cut(s)	720
PflMI	CCANNNNNTGG	2 cut(s)	664, 877
PfoI	TCCNGGA	1 cut(s)	786
PkrI	GCNGC	5 cut(s)	40, 99, 220, 320, 508
PleI	GAGTC	4 cut(s)	125, 427, 437, 677
PpsI	GAGTC	4 cut(s)	125, 427, 437, 677
PpuMI	RGGWCCY	1 cut(s)	53
Psp5II	RGGWCCY	1 cut(s)	53
Psp6I	CCWGG	2 cut(s)	532, 697
PspGI	CCWGG	2 cut(s)	532, 697
PspN4I	GGNNCC	4 cut(s)	54, 63, 565, 592
PspPI	GGNCC	2 cut(s)	53, 112
PspPPI	RGGWCCY	1 cut(s)	53
PstI	CTGCAG	1 cut(s)	323
PstNI	CAGNNNCTG	2 cut(s)	106, 1063
PsuI	RGATCY	2 cut(s)	123, 908
RsaI	GTAC	3 cut(s)	407, 565, 826
RsaNI	GTAC	3 cut(s)	406, 564, 825
RseI	CAYNNNNRTG	1 cut(s)	1066
SapI	GCTCTTC	1 cut(s)	929
SaqAI	TTAA	1 cut(s)	1038
SatI	GCNGC	5 cut(s)	39, 98, 219, 319, 507
Sau3AI	GATC	6 cut(s)	24, 123, 151, 271, 279, 908
Sau96I	GGNCC	2 cut(s)	53, 112
SchI	GAGTC	4 cut(s)	126, 428, 437, 678
ScrFI	CCNGG	3 cut(s)	534, 699, 788
SfaNI	GCATC	5 cut(s)	321, 334, 617, 1021, 1058
SfcI	CTRYAG	2 cut(s)	319, 751
SinI	GGWCC	2 cut(s)	53, 112
SmiMI	CAYNNNNRTG	1 cut(s)	1066
SmlI	CTYRAG	2 cut(s)	416, 458
SmoI	CTYRAG	2 cut(s)	416, 458
SphI	GCATGC	1 cut(s)	970
Sse9I	AATT	7 cut(s)	201, 225, 618, 644, 840, 900, 982
SsiI	CCGC	5 cut(s)	95, 98, 303, 423, 483
SspMI	CTAG	3 cut(s)	198, 206, 600
StyD4I	CCNGG	3 cut(s)	532, 697, 786
StyI	CCWWGG	1 cut(s)	568
TaaI	ACNGT	4 cut(s)	392, 412, 544, 829
TaiI	ACGT	1 cut(s)	473
TaqI	TCGA	2 cut(s)	895, 1017
TasI	AATT	7 cut(s)	201, 225, 618, 644, 840, 900, 982
TatI	WGTACW	2 cut(s)	405, 824
TauI	GCSGC	1 cut(s)	100
TfiI	GAWTC	1 cut(s)	720
Tru1I	TTAA	1 cut(s)	1038
Tru9I	TTAA	1 cut(s)	1038
TscAI	CASTG	2 cut(s)	154, 1068
TseFI	GTSAC	4 cut(s)	143, 250, 670, 1059
TseI	GCWGC	4 cut(s)	38, 218, 318, 506
Tsp45I	GTSAC	4 cut(s)	143, 250, 670, 1059
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	2 cut(s)	154, 1068
Van91I	CCANNNNNTGG	2 cut(s)	664, 877
VpaK11BI	GGWCC	2 cut(s)	53, 112
XapI	RAATTY	3 cut(s)	201, 644, 840
XceI	RCATGY	1 cut(s)	970
XmnI	GAANNNNTTC	2 cut(s)	81, 795
XspI	CTAG	3 cut(s)	198, 206, 600
Zsp2I	ATGCAT	1 cut(s)	968

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.