Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005326

Physical Location & Seq

Genomic Coordinates Forward (+)

6527165 .. 6530888

Gene Structure 3724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG088200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGGGAAGACAACCGGAAAGGTCATCACCTGCAGAGCTGCTGTTGTTTGGGGTCCCGGGGAGCCTTTTGTGATGCAACAAGTTCAAGTGGACCCGCCGCAGAAAAAGGAGGTCCGAATCAAGATCCTCTTCACCTCAATCTGTCACACTGATCTCAGTGCTTGGAAAGGAGAGAATGAAGCTCAGCGTGCCTTTCCTCGCATTCTAGGCCATGAAGCCGCCGGAATTGTTGAGAGCGTTGGTGAAGGTGTGACAGACATGAAAGAAGGGGATCATGTGATCCCTATCTTCAACGGGGAGTGTGGTGACTGCATCTGCTGCAAGCATCAGAAGACTAATATCTGTAACAACTTTGGAGTAAACCCGATGAAGACGGTGATGAACAGTGATGGTAAAACTAGGTTCTCCATAATAGTCAAGGATGGCGGTGATAGAAAACCCATATATCATTTTCTCAGCACATCAACTTTCAGCGAGTACACAGTTCTTGAGTCCGCCTGTGTAGTCAAGATTGACTCGGAAGCTCCCCTCAAGAAGATGACATTGCTCAGTTGTGGTGTTTCAACTGGAGTTGGTGCTGCATGGAATGTTGCCAATGTTCAACCCGGCTCGACCGTTGCCATTTTCGGTTTAGGCGCCGTCGGACTTGCTGTTGCTGAAGGAGCAAGAGCCAGGGGAGCATCTAAAATAATTGGGGTTGACATTAACCCCAATAAATTCATCAAAGGCCAAGCAATGGGAATCACAGATTTCATAAACCCTACCGAACCTGGAAAGCCTTTGCATGAGAGAATCGGGGAAATAACAGAAGGAGGTGTGGACTATAGCTTCGAGTGTGTAGGAAACTCTGATGTTCTTCGGGAAGCCTTTCTCTGCACACATGAGGGATGGGGCTTTACTGTGATATTGGGAATTCATGCAACCCCAAAAATGCTTGCCCTCCATCCAATGGAACTGTTTCATGGTCGAGGAATTATTGGATCTGTGTTTGGAGGCTTCAAAGGGAAGAGCCAACTCCCCCGTTTTGCCAAAGAATGCATGCGAGGGGTGGTCGATTTAGACGAGTTCATAACACATGAGCTTCCCTTCGAGAAGATAAACGATGCGTTTAAGTTGCTCGTTGAAGGCCAGTCACTGAGATGCGTTCTGCATCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00625 ko00626 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00071 map00350 map00625 map00626 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

385

Amino Acids

41.63

Weight (kDa)

6.64

Isoelectric Point (pI)

20.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	35 - 171	2.9e-22	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	213 - 336	1.4e-20	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32780 AT1G64710 AT1G64710 AT1G64710
fragaria_vesca	FvH4_5g10640 FvH4_5g10640 FvH4_5g10640
malus_domestica	MD06G1121600.v1.1
prunus_persica	Prupe.5G132300_v2.0.a1
pyrus_communis	pycom06g11270
rosa_chinensis	RchiOBHm_Chr7g0187491 RchiOBHm_Chr7g0187501
rosa_laevigata	RLG00000004776 RLG00000004777
rosa_multiflora	Rmu_sc0001230.1_g000002 Rmu_sc0019127.1_g000001
rosa_roxburghii	Rroxscaffold_3G00267380 Rroxscaffold_3G00267390
rosa_rugosa	Rorug06G0482000
rosa_samantha	Rh7AG086500 Rh7AG086700 Rh7BG088100 Rh7BG088200 Rh7CG087400 Rh7CG087500 Rh7DG089000 Rh7DG089100
rosa_wichuraiana	Rw7G007630 Rw7G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	38
Acc36I	ACCTGC	1 cut(s)	38
AccB1I	GGYRCC	1 cut(s)	635
AccB7I	CCANNNNNTGG	2 cut(s)	736, 949
AciI	CCGC	5 cut(s)	95, 98, 219, 426, 495
AclWI	GGATC	4 cut(s)	118, 274, 279, 988
AcsI	RAATTY	2 cut(s)	716, 912
AcuI	CTGAAG	1 cut(s)	678
AcyI	GRCGYC	1 cut(s)	636
AfaI	GTAC	1 cut(s)	479
AfiI	CCNNNNNNNGG	2 cut(s)	736, 949
AgsI	TTSAA	6 cut(s)	86, 292, 564, 602, 1000, 1124
AjnI	CCWGG	2 cut(s)	671, 769
AluBI	AGCT	5 cut(s)	38, 182, 524, 828, 1081
AluI	AGCT	5 cut(s)	38, 182, 524, 828, 1081
AlwI	GGATC	4 cut(s)	118, 274, 279, 988
AlwNI	CAGNNNCTG	1 cut(s)	1135
Ama87I	CYCGRG	1 cut(s)	56
AoxI	GGCC	3 cut(s)	208, 727, 1126
ApeKI	GCWGC	3 cut(s)	38, 318, 578
ApoI	RAATTY	2 cut(s)	716, 912
ArsI	GACNNNNNNTTYG	2 cut(s)	812, 844
Asp700I	GAANNNNTTC	2 cut(s)	867, 957
AspLEI	GCGC	1 cut(s)	638
AspS9I	GGNCC	3 cut(s)	53, 91, 112
AsuC2I	CCSGG	3 cut(s)	57, 58, 606
AsuHPI	GGTGA	6 cut(s)	19, 124, 254, 317, 388, 440
AvaI	CYCGRG	1 cut(s)	56
AvaII	GGWCC	3 cut(s)	53, 91, 112
BanI	GGYRCC	1 cut(s)	635
BbsI	GAAGAC	3 cut(s)	14, 338, 377
BbvI	GCAGC	3 cut(s)	25, 305, 565
BccI	CCATC	4 cut(s)	383, 416, 882, 951
BceAI	ACGGC	1 cut(s)	623
BciT130I	CCWGG	2 cut(s)	673, 771
BcnI	CCSGG	3 cut(s)	57, 58, 606
BfaI	CTAG	2 cut(s)	206, 399
BfmI	CTRYAG	2 cut(s)	31, 823
BfoI	RGCGCY	1 cut(s)	639
BfuAI	ACCTGC	1 cut(s)	38
BisI	GCNGC	5 cut(s)	39, 98, 219, 319, 579
BlpI	GCTNAGC	1 cut(s)	183
BlsI	GCNGC	5 cut(s)	40, 99, 220, 320, 580
Bme1390I	CCNGG	5 cut(s)	57, 58, 606, 673, 771
Bme18I	GGWCC	3 cut(s)	53, 91, 112
BmeT110I	CYCGRG	1 cut(s)	56
BmgT120I	GGNCC	3 cut(s)	53, 91, 112
BmiI	GGNNCC	5 cut(s)	54, 55, 63, 93, 637
BmrFI	CCNGG	5 cut(s)	57, 58, 606, 673, 771
BmsI	GCATC	6 cut(s)	63, 321, 334, 689, 1093, 1130
BpiI	GAAGAC	3 cut(s)	14, 338, 377
BpmI	CTGGAG	1 cut(s)	588
Bpu1102I	GCTNAGC	1 cut(s)	183
BpuEI	CTTGAG	2 cut(s)	509, 515
BpuMI	CCSGG	3 cut(s)	57, 58, 606
BsaBI	GATNNNNATC	1 cut(s)	284
BsaHI	GRCGYC	1 cut(s)	636
BsaJI	CCNNGG	3 cut(s)	56, 57, 672
BsaWI	WCCGGW	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	2 cut(s)	736, 949
Bse1I	ACTGG	2 cut(s)	571, 1129
Bse3DI	GCAATG	2 cut(s)	542, 741
Bse8I	GATNNNNATC	1 cut(s)	284
BseBI	CCWGG	2 cut(s)	673, 771
BseDI	CCNNGG	3 cut(s)	56, 57, 672
BseGI	GGATG	3 cut(s)	427, 893, 943
BseJI	GATNNNNATC	1 cut(s)	284
BseLI	CCNNNNNNNGG	2 cut(s)	736, 949
BseMI	GCAATG	2 cut(s)	542, 741
BseMII	CTCAG	5 cut(s)	169, 197, 469, 562, 1127
BseNI	ACTGG	2 cut(s)	571, 1129
BseXI	GCAGC	3 cut(s)	25, 305, 565
BsgI	GTGCAG	1 cut(s)	859
Bsh1285I	CGRYCG	1 cut(s)	615
BshFI	GGCC	3 cut(s)	210, 729, 1128
BshNI	GGYRCC	1 cut(s)	635
BsiEI	CGRYCG	1 cut(s)	615
BsiHKCI	CYCGRG	1 cut(s)	56
BsiSI	CCGG	4 cut(s)	15, 57, 222, 606
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	2 cut(s)	736, 949
BsmFI	GGGAC	1 cut(s)	39
BsmI	GAATGC	2 cut(s)	201, 1040
BsnI	GGCC	3 cut(s)	210, 729, 1128
BsoBI	CYCGRG	1 cut(s)	56
Bsp143I	GATC	5 cut(s)	123, 151, 271, 279, 980
Bsp1720I	GCTNAGC	1 cut(s)	183
BspACI	CCGC	5 cut(s)	95, 98, 219, 426, 495
BspANI	GGCC	3 cut(s)	210, 729, 1128
BspCNI	CTCAG	5 cut(s)	168, 196, 468, 561, 1128
BspLI	GGNNCC	5 cut(s)	54, 55, 63, 93, 637
BspMAI	CTGCAG	1 cut(s)	35
BspMI	ACCTGC	1 cut(s)	38
BspPI	GGATC	4 cut(s)	118, 274, 279, 988
BspQI	GCTCTTC	1 cut(s)	1001
BspT107I	GGYRCC	1 cut(s)	635
BsrDI	GCAATG	2 cut(s)	542, 741
BsrI	ACTGG	2 cut(s)	571, 1129
BssECI	CCNNGG	3 cut(s)	56, 57, 672
BssMI	GATC	5 cut(s)	123, 151, 271, 279, 980
BssNI	GRCGYC	1 cut(s)	636
Bst2UI	CCWGG	2 cut(s)	673, 771
Bst4CI	ACNGT	6 cut(s)	376, 386, 484, 616, 901, 957
Bst6I	CTCTTC	2 cut(s)	134, 1001
BstACI	GRCGYC	1 cut(s)	636
BstAPI	GCANNNNNTGC	1 cut(s)	318
BstC8I	GCNNGC	4 cut(s)	189, 323, 936, 1040
BstDEI	CTNAG	5 cut(s)	155, 183, 455, 548, 1136
BstF5I	GGATG	3 cut(s)	427, 893, 943
BstH2I	RGCGCY	1 cut(s)	639
BstHHI	GCGC	1 cut(s)	638
BstKTI	GATC	5 cut(s)	126, 154, 274, 282, 983
BstMBI	GATC	5 cut(s)	123, 151, 271, 279, 980
BstMCI	CGRYCG	1 cut(s)	615
BstMWI	GCNNNNNNNGC	5 cut(s)	188, 207, 318, 662, 677
BstNI	CCWGG	2 cut(s)	673, 771
BstNSI	RCATGY	1 cut(s)	1042
BstSCI	CCNGG	5 cut(s)	55, 56, 604, 671, 769
BstSFI	CTRYAG	2 cut(s)	31, 823
BstV1I	GCAGC	3 cut(s)	25, 305, 565
BstV2I	GAAGAC	3 cut(s)	14, 338, 377
BstX2I	RGATCY	2 cut(s)	123, 980
BstYI	RGATCY	2 cut(s)	123, 980
BsuRI	GGCC	3 cut(s)	210, 729, 1128
BtsCI	GGATG	3 cut(s)	427, 893, 943
BtsIMutI	CAGTG	4 cut(s)	147, 163, 391, 1133
BveI	ACCTGC	1 cut(s)	38
Cac8I	GCNNGC	4 cut(s)	189, 323, 936, 1040
CaiI	CAGNNNCTG	1 cut(s)	1135
CfoI	GCGC	1 cut(s)	638
Cfr13I	GGNCC	3 cut(s)	53, 91, 112
Cfr9I	CCCGGG	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	478
CviQI	GTAC	1 cut(s)	478
DdeI	CTNAG	5 cut(s)	155, 183, 455, 548, 1136
DinI	GGCGCC	1 cut(s)	637
DpnI	GATC	5 cut(s)	125, 153, 273, 281, 982
DpnII	GATC	5 cut(s)	123, 151, 271, 279, 980
Eam1104I	CTCTTC	2 cut(s)	134, 1001
EarI	CTCTTC	2 cut(s)	134, 1001
EciI	GGCGGA	1 cut(s)	484
Eco47I	GGWCC	3 cut(s)	53, 91, 112
Eco57I	CTGAAG	1 cut(s)	678
Eco88I	CYCGRG	1 cut(s)	56
EcoO109I	RGGNCCY	1 cut(s)	53
EcoRI	GAATTC	1 cut(s)	912
EcoRII	CCWGG	2 cut(s)	671, 769
EcoT22I	ATGCAT	1 cut(s)	1040
EgeI	GGCGCC	1 cut(s)	637
EheI	GGCGCC	1 cut(s)	637
FalI	AAGNNNNNCTT	2 cut(s)	113, 145
FaqI	GGGAC	1 cut(s)	39
FauI	CCCGC	1 cut(s)	102
Fnu4HI	GCNGC	5 cut(s)	39, 98, 219, 319, 579
FokI	GGATG	3 cut(s)	434, 900, 930
Fsp4HI	GCNGC	5 cut(s)	39, 98, 219, 319, 579
FspBI	CTAG	2 cut(s)	206, 399
GlaI	GCGC	1 cut(s)	637
GluI	GCNGC	5 cut(s)	39, 98, 219, 319, 579
GsuI	CTGGAG	1 cut(s)	588
HaeII	RGCGCY	1 cut(s)	639
HaeIII	GGCC	3 cut(s)	210, 729, 1128
HapII	CCGG	4 cut(s)	15, 57, 222, 606
HhaI	GCGC	1 cut(s)	638
Hin1I	GRCGYC	1 cut(s)	636
Hin6I	GCGC	1 cut(s)	636
HinP1I	GCGC	1 cut(s)	636
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HinfI	GANTC	5 cut(s)	117, 491, 515, 741, 792
HpaII	CCGG	4 cut(s)	15, 57, 222, 606
HphI	GGTGA	6 cut(s)	19, 124, 254, 317, 388, 440
Hpy166II	GTNNAC	5 cut(s)	91, 361, 480, 700, 820
Hpy188I	TCNGA	5 cut(s)	116, 330, 520, 644, 850
Hpy188III	TCNNGA	6 cut(s)	121, 488, 508, 532, 860, 1090
Hpy8I	GTNNAC	5 cut(s)	91, 361, 480, 700, 820
Hpy99I	CGWCG	1 cut(s)	644
HpyAV	CCTTC	6 cut(s)	239, 260, 653, 803, 1096, 1118
HpyCH4III	ACNGT	6 cut(s)	376, 386, 484, 616, 901, 957
HpyF10VI	GCNNNNNNNGC	5 cut(s)	188, 207, 318, 662, 677
HpyF3I	CTNAG	5 cut(s)	155, 183, 455, 548, 1136
Hsp92I	GRCGYC	1 cut(s)	636
HspAI	GCGC	1 cut(s)	636
KasI	GGCGCC	1 cut(s)	635
KflI	GGGWCCC	1 cut(s)	53
Kzo9I	GATC	5 cut(s)	123, 151, 271, 279, 980
LguI	GCTCTTC	1 cut(s)	1001
LmnI	GCTCC	4 cut(s)	61, 529, 662, 677
Lsp1109I	GCAGC	3 cut(s)	25, 305, 565
LweI	GCATC	6 cut(s)	63, 321, 334, 689, 1093, 1130
MaeI	CTAG	2 cut(s)	206, 399
MaeIII	GTNAC	5 cut(s)	143, 250, 305, 344, 1131
MalI	GATC	5 cut(s)	125, 153, 273, 281, 982
MboI	GATC	5 cut(s)	123, 151, 271, 279, 980
MboII	GAAGA	9 cut(s)	19, 121, 280, 343, 382, 547, 848, 1018, 1105
MflI	RGATCY	2 cut(s)	123, 980
MluCI	AATT	5 cut(s)	225, 690, 716, 912, 972
Mly113I	GGCGCC	1 cut(s)	636
MlyI	GAGTC	2 cut(s)	500, 509
MmeI	TCCRAC	1 cut(s)	622
Mph1103I	ATGCAT	1 cut(s)	1040
MroXI	GAANNNNTTC	2 cut(s)	867, 957
MseI	TTAA	2 cut(s)	705, 1110
MslI	CAYNNNNRTG	1 cut(s)	1138
MspI	CCGG	4 cut(s)	15, 57, 222, 606
MspR9I	CCNGG	5 cut(s)	57, 58, 606, 673, 771
Mva1269I	GAATGC	2 cut(s)	201, 1040
MvaI	CCWGG	2 cut(s)	673, 771
MwoI	GCNNNNNNNGC	5 cut(s)	188, 207, 318, 662, 677
NarI	GGCGCC	1 cut(s)	636
NciI	CCSGG	3 cut(s)	57, 58, 606
NdeII	GATC	5 cut(s)	123, 151, 271, 279, 980
NlaIV	GGNNCC	5 cut(s)	54, 55, 63, 93, 637
NmuCI	GTSAC	4 cut(s)	143, 250, 305, 1131
NsiI	ATGCAT	1 cut(s)	1040
NspI	RCATGY	1 cut(s)	1042
PaeI	GCATGC	1 cut(s)	1042
PaqCI	CACCTGC	1 cut(s)	38
PciSI	GCTCTTC	1 cut(s)	1001
PcsI	WCGNNNNNNNCGW	1 cut(s)	1059
PctI	GAATGC	2 cut(s)	201, 1040
PdmI	GAANNNNTTC	2 cut(s)	867, 957
PfeI	GAWTC	3 cut(s)	117, 741, 792
PflMI	CCANNNNNTGG	2 cut(s)	736, 949
PkrI	GCNGC	5 cut(s)	40, 99, 220, 320, 580
PleI	GAGTC	2 cut(s)	499, 509
PluTI	GGCGCC	1 cut(s)	639
PpsI	GAGTC	2 cut(s)	499, 509
PpuMI	RGGWCCY	1 cut(s)	53
Psp5II	RGGWCCY	1 cut(s)	53
Psp6I	CCWGG	2 cut(s)	671, 769
PspGI	CCWGG	2 cut(s)	671, 769
PspN4I	GGNNCC	5 cut(s)	54, 55, 63, 93, 637
PspPI	GGNCC	3 cut(s)	53, 91, 112
PspPPI	RGGWCCY	1 cut(s)	53
PstI	CTGCAG	1 cut(s)	35
PstNI	CAGNNNCTG	1 cut(s)	1135
PsuI	RGATCY	2 cut(s)	123, 980
RsaI	GTAC	1 cut(s)	479
RsaNI	GTAC	1 cut(s)	478
RseI	CAYNNNNRTG	1 cut(s)	1138
SapI	GCTCTTC	1 cut(s)	1001
SaqAI	TTAA	2 cut(s)	705, 1110
SatI	GCNGC	5 cut(s)	39, 98, 219, 319, 579
Sau3AI	GATC	5 cut(s)	123, 151, 271, 279, 980
Sau96I	GGNCC	3 cut(s)	53, 91, 112
SchI	GAGTC	2 cut(s)	500, 509
ScrFI	CCNGG	5 cut(s)	57, 58, 606, 673, 771
SfaNI	GCATC	6 cut(s)	63, 321, 334, 689, 1093, 1130
SfcI	CTRYAG	2 cut(s)	31, 823
SfoI	GGCGCC	1 cut(s)	637
SinI	GGWCC	3 cut(s)	53, 91, 112
SmaI	CCCGGG	1 cut(s)	58
SmiMI	CAYNNNNRTG	1 cut(s)	1138
SmlI	CTYRAG	2 cut(s)	488, 530
SmoI	CTYRAG	2 cut(s)	488, 530
SphI	GCATGC	1 cut(s)	1042
Sse9I	AATT	5 cut(s)	225, 690, 716, 912, 972
SsiI	CCGC	5 cut(s)	95, 98, 219, 426, 495
SspDI	GGCGCC	1 cut(s)	635
SspMI	CTAG	2 cut(s)	206, 399
StyD4I	CCNGG	5 cut(s)	55, 56, 604, 671, 769
TaaI	ACNGT	6 cut(s)	376, 386, 484, 616, 901, 957
TaqI	TCGA	5 cut(s)	611, 831, 967, 1053, 1089
TasI	AATT	5 cut(s)	225, 690, 716, 912, 972
TatI	WGTACW	1 cut(s)	477
TauI	GCSGC	2 cut(s)	100, 221
TfiI	GAWTC	3 cut(s)	117, 741, 792
Tru1I	TTAA	2 cut(s)	705, 1110
Tru9I	TTAA	2 cut(s)	705, 1110
TscAI	CASTG	4 cut(s)	154, 163, 391, 1140
TseFI	GTSAC	4 cut(s)	143, 250, 305, 1131
TseI	GCWGC	3 cut(s)	38, 318, 578
Tsp45I	GTSAC	4 cut(s)	143, 250, 305, 1131
TspMI	CCCGGG	1 cut(s)	56
TspRI	CASTG	4 cut(s)	154, 163, 391, 1140
Van91I	CCANNNNNTGG	2 cut(s)	736, 949
VpaK11BI	GGWCC	3 cut(s)	53, 91, 112
XapI	RAATTY	2 cut(s)	716, 912
XceI	RCATGY	1 cut(s)	1042
XmaI	CCCGGG	1 cut(s)	56
XmnI	GAANNNNTTC	2 cut(s)	867, 957
XspI	CTAG	2 cut(s)	206, 399
Zsp2I	ATGCAT	1 cut(s)	1040

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.