Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001230.1

Orthogroup ID

OG0005326

Physical Location & Seq

Genomic Coordinates Reverse (-)

1717 .. 6974

Gene Structure 5258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001230.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

atggggaagacaaccggaaaggtcatcacctgcagagctgctgttgtttggggtcccggggagccttttgtgatggaacaagttcaagtggacccaccgcagaaaaaggaggtccgaatcaagatcctcttcacctcaatctgtcacactgatctcagtgcttggaaaggagagaatgaagctcagcgggcctttcctcgcattctaggccatgaagccgccggaattgttgagagcgttggtgaaggtgtgacagacatgaaagaaggggatcatgtgatccctatcttcaacggggagtgtggtgactgcatctgctgcaagcatcagaagactaatatctgtaacaactttggagtaaacccgatgaagacggtgatgaacagtgatggtaaaactaggttctccataatagccaaggatggcggtgatagaaaacccatatatcattttctcagcacatcaactttcagcgagtacacagttcttgagtccgcctgtgtagtcaggattgactcggaagctcccctcaagaagatggcattgctcagttgtggtgtttcaactggagttggtgctgcatggaatgttgccaatgttcaacccggctcgaccgttgccattttcggtttaggcgccgtcggacttgctgttgctgaaggagcaagagccaggggagcatctaaaataattggggttgacattaaccccaataaattcatcaaaggccaagcaatgggaatcacagatttcataaaccctaccgaacctggaaagcctttgcatgagtactcgtttcgtaatgtgaacataggccaagcaatgggaatcacagatttcataaaccctaccgaacctggaaagcctttgcatgagagagtcggggaaataacagaaggaggtgtggactatagcttcgagtgtgtaggaaactctgatgttcttcgggaagcctttctctgcacacatgagggatggggttttactgtgatattgggaattcatgctaccccaaaattgcttgccctccatccaatggaactgtttcatggtcgaggaattattggatctgtgtttggaggcttcaaagggaagagccaactcccccgttttgccaaagaatgcatgcgaggggtggtcgatttagacgagttcataacacatgagcttcccttcgagaagataaacgatgcgtttaagttgctcgttgaaggccagtcactgagatgcgttctgcatctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00625 ko00626 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00071 map00350 map00625 map00626 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

414

Amino Acids

44.8

Weight (kDa)

6.37

Isoelectric Point (pI)

20.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32780 AT1G64710 AT1G64710 AT1G64710
fragaria_vesca	FvH4_5g10640 FvH4_5g10640 FvH4_5g10640
malus_domestica	MD06G1121600.v1.1
prunus_persica	Prupe.5G132300_v2.0.a1
pyrus_communis	pycom06g11270
rosa_chinensis	RchiOBHm_Chr7g0187491 RchiOBHm_Chr7g0187501
rosa_laevigata	RLG00000004776 RLG00000004777
rosa_multiflora	Rmu_sc0001230.1_g000002 Rmu_sc0019127.1_g000001
rosa_roxburghii	Rroxscaffold_3G00267380 Rroxscaffold_3G00267390
rosa_rugosa	Rorug06G0482000
rosa_samantha	Rh7AG086500 Rh7AG086700 Rh7BG088100 Rh7BG088200 Rh7CG087400 Rh7CG087500 Rh7DG089000 Rh7DG089100
rosa_wichuraiana	Rw7G007630 Rw7G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	38
Acc36I	ACCTGC	1 cut(s)	38
AccB1I	GGYRCC	1 cut(s)	635
AccB7I	CCANNNNNTGG	3 cut(s)	736, 823, 1036
AciI	CCGC	5 cut(s)	98, 187, 219, 426, 495
AclWI	GGATC	4 cut(s)	118, 274, 279, 1075
AcsI	RAATTY	2 cut(s)	716, 999
AcuI	CTGAAG	1 cut(s)	678
AcyI	GRCGYC	1 cut(s)	636
AfaI	GTAC	2 cut(s)	479, 791
AfiI	CCNNNNNNNGG	3 cut(s)	736, 823, 1036
AgsI	TTSAA	6 cut(s)	86, 292, 564, 602, 1087, 1211
AjnI	CCWGG	3 cut(s)	671, 769, 856
AluBI	AGCT	5 cut(s)	38, 182, 524, 915, 1168
AluI	AGCT	5 cut(s)	38, 182, 524, 915, 1168
AlwI	GGATC	4 cut(s)	118, 274, 279, 1075
AlwNI	CAGNNNCTG	1 cut(s)	1222
Ama87I	CYCGRG	1 cut(s)	56
AoxI	GGCC	5 cut(s)	189, 208, 727, 814, 1213
ApeKI	GCWGC	3 cut(s)	38, 318, 578
ApoI	RAATTY	2 cut(s)	716, 999
ArsI	GACNNNNNNTTYG	2 cut(s)	899, 931
Asp700I	GAANNNNTTC	3 cut(s)	81, 954, 1044
AspLEI	GCGC	1 cut(s)	638
AspS9I	GGNCC	4 cut(s)	53, 91, 112, 189
AsuC2I	CCSGG	3 cut(s)	57, 58, 606
AsuHPI	GGTGA	6 cut(s)	19, 124, 254, 317, 388, 440
AvaI	CYCGRG	1 cut(s)	56
AvaII	GGWCC	3 cut(s)	53, 91, 112
BanI	GGYRCC	1 cut(s)	635
BbsI	GAAGAC	3 cut(s)	14, 338, 377
BbvI	GCAGC	3 cut(s)	25, 305, 565
BccI	CCATC	6 cut(s)	67, 383, 416, 532, 969, 1038
BceAI	ACGGC	1 cut(s)	623
BciT130I	CCWGG	3 cut(s)	673, 771, 858
BcnI	CCSGG	3 cut(s)	57, 58, 606
BfaI	CTAG	2 cut(s)	206, 399
BfmI	CTRYAG	2 cut(s)	31, 910
BfoI	RGCGCY	1 cut(s)	639
BfuAI	ACCTGC	1 cut(s)	38
BisI	GCNGC	4 cut(s)	39, 219, 319, 579
BlpI	GCTNAGC	1 cut(s)	183
BlsI	GCNGC	4 cut(s)	40, 220, 320, 580
BmcAI	AGTACT	1 cut(s)	791
Bme1390I	CCNGG	6 cut(s)	57, 58, 606, 673, 771, 858
Bme18I	GGWCC	3 cut(s)	53, 91, 112
BmeT110I	CYCGRG	1 cut(s)	56
BmgT120I	GGNCC	4 cut(s)	53, 91, 112, 189
BmiI	GGNNCC	5 cut(s)	54, 55, 63, 93, 637
BmrFI	CCNGG	6 cut(s)	57, 58, 606, 673, 771, 858
BmsI	GCATC	5 cut(s)	321, 334, 689, 1180, 1217
BpiI	GAAGAC	3 cut(s)	14, 338, 377
BpmI	CTGGAG	1 cut(s)	588
Bpu1102I	GCTNAGC	1 cut(s)	183
BpuEI	CTTGAG	2 cut(s)	509, 515
BpuMI	CCSGG	3 cut(s)	57, 58, 606
BsaBI	GATNNNNATC	1 cut(s)	284
BsaHI	GRCGYC	1 cut(s)	636
BsaJI	CCNNGG	4 cut(s)	56, 57, 417, 672
BsaWI	WCCGGW	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	3 cut(s)	736, 823, 1036
Bse1I	ACTGG	2 cut(s)	571, 1216
Bse3DI	GCAATG	3 cut(s)	542, 741, 828
Bse8I	GATNNNNATC	1 cut(s)	284
BseBI	CCWGG	3 cut(s)	673, 771, 858
BseDI	CCNNGG	4 cut(s)	56, 57, 417, 672
BseGI	GGATG	3 cut(s)	427, 980, 1030
BseJI	GATNNNNATC	1 cut(s)	284
BseLI	CCNNNNNNNGG	3 cut(s)	736, 823, 1036
BseMI	GCAATG	3 cut(s)	542, 741, 828
BseMII	CTCAG	5 cut(s)	169, 197, 469, 562, 1214
BseNI	ACTGG	2 cut(s)	571, 1216
BseXI	GCAGC	3 cut(s)	25, 305, 565
BsgI	GTGCAG	1 cut(s)	946
Bsh1285I	CGRYCG	1 cut(s)	615
BshFI	GGCC	5 cut(s)	191, 210, 729, 816, 1215
BshNI	GGYRCC	1 cut(s)	635
BsiEI	CGRYCG	1 cut(s)	615
BsiHKCI	CYCGRG	1 cut(s)	56
BsiSI	CCGG	4 cut(s)	15, 57, 222, 606
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	3 cut(s)	736, 823, 1036
BsmFI	GGGAC	1 cut(s)	39
BsmI	GAATGC	2 cut(s)	201, 1127
BsnI	GGCC	5 cut(s)	191, 210, 729, 816, 1215
BsoBI	CYCGRG	1 cut(s)	56
Bsp143I	GATC	5 cut(s)	123, 151, 271, 279, 1067
Bsp1720I	GCTNAGC	1 cut(s)	183
BspACI	CCGC	5 cut(s)	98, 187, 219, 426, 495
BspANI	GGCC	5 cut(s)	191, 210, 729, 816, 1215
BspCNI	CTCAG	5 cut(s)	168, 196, 468, 561, 1215
BspLI	GGNNCC	5 cut(s)	54, 55, 63, 93, 637
BspMAI	CTGCAG	1 cut(s)	35
BspMI	ACCTGC	1 cut(s)	38
BspPI	GGATC	4 cut(s)	118, 274, 279, 1075
BspQI	GCTCTTC	1 cut(s)	1088
BspT107I	GGYRCC	1 cut(s)	635
BsrDI	GCAATG	3 cut(s)	542, 741, 828
BsrI	ACTGG	2 cut(s)	571, 1216
BssECI	CCNNGG	4 cut(s)	56, 57, 417, 672
BssMI	GATC	5 cut(s)	123, 151, 271, 279, 1067
BssNI	GRCGYC	1 cut(s)	636
BssT1I	CCWWGG	1 cut(s)	417
Bst2UI	CCWGG	3 cut(s)	673, 771, 858
Bst4CI	ACNGT	6 cut(s)	376, 386, 484, 616, 988, 1044
Bst6I	CTCTTC	2 cut(s)	134, 1088
BstACI	GRCGYC	1 cut(s)	636
BstAPI	GCANNNNNTGC	1 cut(s)	318
BstC8I	GCNNGC	4 cut(s)	189, 323, 1023, 1127
BstDEI	CTNAG	5 cut(s)	155, 183, 455, 548, 1223
BstF5I	GGATG	3 cut(s)	427, 980, 1030
BstH2I	RGCGCY	1 cut(s)	639
BstHHI	GCGC	1 cut(s)	638
BstKTI	GATC	5 cut(s)	126, 154, 274, 282, 1070
BstMBI	GATC	5 cut(s)	123, 151, 271, 279, 1067
BstMCI	CGRYCG	1 cut(s)	615
BstMWI	GCNNNNNNNGC	5 cut(s)	188, 207, 318, 662, 677
BstNI	CCWGG	3 cut(s)	673, 771, 858
BstNSI	RCATGY	1 cut(s)	1129
BstSCI	CCNGG	6 cut(s)	55, 56, 604, 671, 769, 856
BstSFI	CTRYAG	2 cut(s)	31, 910
BstV1I	GCAGC	3 cut(s)	25, 305, 565
BstV2I	GAAGAC	3 cut(s)	14, 338, 377
BstX2I	RGATCY	2 cut(s)	123, 1067
BstYI	RGATCY	2 cut(s)	123, 1067
BsuRI	GGCC	5 cut(s)	191, 210, 729, 816, 1215
BtsCI	GGATG	3 cut(s)	427, 980, 1030
BtsIMutI	CAGTG	4 cut(s)	147, 163, 391, 1220
BveI	ACCTGC	1 cut(s)	38
Cac8I	GCNNGC	4 cut(s)	189, 323, 1023, 1127
CaiI	CAGNNNCTG	1 cut(s)	1222
CfoI	GCGC	1 cut(s)	638
Cfr13I	GGNCC	4 cut(s)	53, 91, 112, 189
Cfr9I	CCCGGG	1 cut(s)	56
Csp6I	GTAC	2 cut(s)	478, 790
CviQI	GTAC	2 cut(s)	478, 790
DdeI	CTNAG	5 cut(s)	155, 183, 455, 548, 1223
DinI	GGCGCC	1 cut(s)	637
DpnI	GATC	5 cut(s)	125, 153, 273, 281, 1069
DpnII	GATC	5 cut(s)	123, 151, 271, 279, 1067
Eam1104I	CTCTTC	2 cut(s)	134, 1088
EarI	CTCTTC	2 cut(s)	134, 1088
EciI	GGCGGA	1 cut(s)	484
Eco130I	CCWWGG	1 cut(s)	417
Eco47I	GGWCC	3 cut(s)	53, 91, 112
Eco57I	CTGAAG	1 cut(s)	678
Eco88I	CYCGRG	1 cut(s)	56
EcoO109I	RGGNCCY	1 cut(s)	53
EcoRI	GAATTC	1 cut(s)	999
EcoRII	CCWGG	3 cut(s)	671, 769, 856
EcoT14I	CCWWGG	1 cut(s)	417
EcoT22I	ATGCAT	1 cut(s)	1127
EgeI	GGCGCC	1 cut(s)	637
EheI	GGCGCC	1 cut(s)	637
ErhI	CCWWGG	1 cut(s)	417
FalI	AAGNNNNNCTT	2 cut(s)	113, 145
FaqI	GGGAC	1 cut(s)	39
FauI	CCCGC	1 cut(s)	180
Fnu4HI	GCNGC	4 cut(s)	39, 219, 319, 579
FokI	GGATG	3 cut(s)	434, 987, 1017
Fsp4HI	GCNGC	4 cut(s)	39, 219, 319, 579
FspBI	CTAG	2 cut(s)	206, 399
GlaI	GCGC	1 cut(s)	637
GluI	GCNGC	4 cut(s)	39, 219, 319, 579
GsuI	CTGGAG	1 cut(s)	588
HaeII	RGCGCY	1 cut(s)	639
HaeIII	GGCC	5 cut(s)	191, 210, 729, 816, 1215
HapII	CCGG	4 cut(s)	15, 57, 222, 606
HhaI	GCGC	1 cut(s)	638
Hin1I	GRCGYC	1 cut(s)	636
Hin6I	GCGC	1 cut(s)	636
HinP1I	GCGC	1 cut(s)	636
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HinfI	GANTC	6 cut(s)	117, 491, 515, 741, 828, 879
HpaII	CCGG	4 cut(s)	15, 57, 222, 606
HphI	GGTGA	6 cut(s)	19, 124, 254, 317, 388, 440
Hpy166II	GTNNAC	6 cut(s)	91, 361, 480, 700, 808, 907
Hpy188I	TCNGA	5 cut(s)	116, 330, 520, 644, 937
Hpy188III	TCNNGA	6 cut(s)	121, 488, 508, 532, 947, 1177
Hpy8I	GTNNAC	6 cut(s)	91, 361, 480, 700, 808, 907
Hpy99I	CGWCG	1 cut(s)	644
HpyAV	CCTTC	6 cut(s)	239, 260, 653, 890, 1183, 1205
HpyCH4III	ACNGT	6 cut(s)	376, 386, 484, 616, 988, 1044
HpyCH4V	TGCA	9 cut(s)	33, 312, 321, 581, 784, 871, 963, 1125, 1237
HpyF10VI	GCNNNNNNNGC	5 cut(s)	188, 207, 318, 662, 677
HpyF3I	CTNAG	5 cut(s)	155, 183, 455, 548, 1223
Hsp92I	GRCGYC	1 cut(s)	636
HspAI	GCGC	1 cut(s)	636
KasI	GGCGCC	1 cut(s)	635
KflI	GGGWCCC	1 cut(s)	53
Kzo9I	GATC	5 cut(s)	123, 151, 271, 279, 1067
LguI	GCTCTTC	1 cut(s)	1088
LmnI	GCTCC	4 cut(s)	61, 529, 662, 677
Lsp1109I	GCAGC	3 cut(s)	25, 305, 565
LweI	GCATC	5 cut(s)	321, 334, 689, 1180, 1217
MaeI	CTAG	2 cut(s)	206, 399
MaeIII	GTNAC	5 cut(s)	143, 250, 305, 344, 1218
MalI	GATC	5 cut(s)	125, 153, 273, 281, 1069
MboI	GATC	5 cut(s)	123, 151, 271, 279, 1067
MboII	GAAGA	9 cut(s)	19, 121, 280, 343, 382, 547, 935, 1105, 1192
MflI	RGATCY	2 cut(s)	123, 1067
MluCI	AATT	6 cut(s)	225, 690, 716, 999, 1016, 1059
Mly113I	GGCGCC	1 cut(s)	636
MlyI	GAGTC	3 cut(s)	500, 509, 888
MmeI	TCCRAC	1 cut(s)	622
Mph1103I	ATGCAT	1 cut(s)	1127
MroXI	GAANNNNTTC	3 cut(s)	81, 954, 1044
MseI	TTAA	2 cut(s)	705, 1197
MslI	CAYNNNNRTG	1 cut(s)	1225
MspA1I	CMGCKG	1 cut(s)	187
MspI	CCGG	4 cut(s)	15, 57, 222, 606
MspR9I	CCNGG	6 cut(s)	57, 58, 606, 673, 771, 858
Mva1269I	GAATGC	2 cut(s)	201, 1127
MvaI	CCWGG	3 cut(s)	673, 771, 858
MwoI	GCNNNNNNNGC	5 cut(s)	188, 207, 318, 662, 677
NarI	GGCGCC	1 cut(s)	636
NciI	CCSGG	3 cut(s)	57, 58, 606
NdeII	GATC	5 cut(s)	123, 151, 271, 279, 1067
NlaIV	GGNNCC	5 cut(s)	54, 55, 63, 93, 637
NmuCI	GTSAC	4 cut(s)	143, 250, 305, 1218
NsiI	ATGCAT	1 cut(s)	1127
NspI	RCATGY	1 cut(s)	1129
PaeI	GCATGC	1 cut(s)	1129
PaqCI	CACCTGC	1 cut(s)	38
PciSI	GCTCTTC	1 cut(s)	1088
PcsI	WCGNNNNNNNCGW	1 cut(s)	1146
PctI	GAATGC	2 cut(s)	201, 1127
PdmI	GAANNNNTTC	3 cut(s)	81, 954, 1044
PfeI	GAWTC	3 cut(s)	117, 741, 828
PflMI	CCANNNNNTGG	3 cut(s)	736, 823, 1036
PkrI	GCNGC	4 cut(s)	40, 220, 320, 580
PleI	GAGTC	3 cut(s)	499, 509, 887
PluTI	GGCGCC	1 cut(s)	639
PpsI	GAGTC	3 cut(s)	499, 509, 887
PpuMI	RGGWCCY	1 cut(s)	53
Psp5II	RGGWCCY	1 cut(s)	53
Psp6I	CCWGG	3 cut(s)	671, 769, 856
PspGI	CCWGG	3 cut(s)	671, 769, 856
PspN4I	GGNNCC	5 cut(s)	54, 55, 63, 93, 637
PspPI	GGNCC	4 cut(s)	53, 91, 112, 189
PspPPI	RGGWCCY	1 cut(s)	53
PstI	CTGCAG	1 cut(s)	35
PstNI	CAGNNNCTG	1 cut(s)	1222
PsuI	RGATCY	2 cut(s)	123, 1067
RsaI	GTAC	2 cut(s)	479, 791
RsaNI	GTAC	2 cut(s)	478, 790
RseI	CAYNNNNRTG	1 cut(s)	1225
SapI	GCTCTTC	1 cut(s)	1088
SaqAI	TTAA	2 cut(s)	705, 1197
SatI	GCNGC	4 cut(s)	39, 219, 319, 579
Sau3AI	GATC	5 cut(s)	123, 151, 271, 279, 1067
Sau96I	GGNCC	4 cut(s)	53, 91, 112, 189
ScaI	AGTACT	1 cut(s)	791
SchI	GAGTC	3 cut(s)	500, 509, 888
ScrFI	CCNGG	6 cut(s)	57, 58, 606, 673, 771, 858
SfaNI	GCATC	5 cut(s)	321, 334, 689, 1180, 1217
SfcI	CTRYAG	2 cut(s)	31, 910
SfoI	GGCGCC	1 cut(s)	637
SinI	GGWCC	3 cut(s)	53, 91, 112
SmaI	CCCGGG	1 cut(s)	58
SmiMI	CAYNNNNRTG	1 cut(s)	1225
SmlI	CTYRAG	2 cut(s)	488, 530
SmoI	CTYRAG	2 cut(s)	488, 530
SphI	GCATGC	1 cut(s)	1129
Sse9I	AATT	6 cut(s)	225, 690, 716, 999, 1016, 1059
SsiI	CCGC	5 cut(s)	98, 187, 219, 426, 495
SspDI	GGCGCC	1 cut(s)	635
SspMI	CTAG	2 cut(s)	206, 399
StyD4I	CCNGG	6 cut(s)	55, 56, 604, 671, 769, 856
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	6 cut(s)	376, 386, 484, 616, 988, 1044
TaqI	TCGA	5 cut(s)	611, 918, 1054, 1140, 1176
TasI	AATT	6 cut(s)	225, 690, 716, 999, 1016, 1059
TatI	WGTACW	2 cut(s)	477, 789
TauI	GCSGC	1 cut(s)	221
TfiI	GAWTC	3 cut(s)	117, 741, 828
Tru1I	TTAA	2 cut(s)	705, 1197
Tru9I	TTAA	2 cut(s)	705, 1197
TscAI	CASTG	4 cut(s)	154, 163, 391, 1227
TseFI	GTSAC	4 cut(s)	143, 250, 305, 1218
TseI	GCWGC	3 cut(s)	38, 318, 578
Tsp45I	GTSAC	4 cut(s)	143, 250, 305, 1218
TspMI	CCCGGG	1 cut(s)	56
TspRI	CASTG	4 cut(s)	154, 163, 391, 1227
Van91I	CCANNNNNTGG	3 cut(s)	736, 823, 1036
VpaK11BI	GGWCC	3 cut(s)	53, 91, 112
XapI	RAATTY	2 cut(s)	716, 999
XceI	RCATGY	1 cut(s)	1129
XmaI	CCCGGG	1 cut(s)	56
XmnI	GAANNNNTTC	3 cut(s)	81, 954, 1044
XspI	CTAG	2 cut(s)	206, 399
ZrmI	AGTACT	1 cut(s)	791
Zsp2I	ATGCAT	1 cut(s)	1127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.