RLG00000004776

Alcohol dehydrogenase-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
62173417 .. 62177792
4376 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004776

Sequence Viewer

Length: 1236 bp
ATGGGGAAGACAACCGGAAAGGTCATCACCTGCAGAGCTGCTGTTGTTTGGGTTCCCGGGGAGCCTTTTGTGATGGAACAAGTTCAAGTGGACCCGCCGCAGAAAAAGGAGGTCCGAATCAAGATCCTCTTCACCTCAATCTGTCACACTGATCTCAGCGCTTGGAAAGGAGAGAATGAAGCTCAGCGGGCCTTTCCTCGCATTCTAGGCCATGAAGCCGCCGGAATTGTTGAGAGCGTTGGTGAAGGTGTGACAGACATGAAAGAAGGGGATCATGTGATCCCTATCTTCAACGGGGAGTGTGGTGACTGCATCTGCTGCAAGCATCAGAAGACTAATATCTGTAACAACTTTGGAGTAAACCCGATGAAGACGGTGATGAACAGTGATGGTAAAACTAGGTTCTCCATAACAGCCAAGGATGGCGGTGATAGAAAACCCATATATCATTTTCTCAGCACATCAACTTTCTGCGAGTACACGGTTCTGGAGTCCGCCTGTGTAGTCAAGATTGACTCGGAAGCTCCCCTCAAGAAGATGACATTGCTCAGTTGTGGTGTTTCAACTGGAGTTGGTGCTGCATGGAATGTTGCCAATGTTCAACCCGGCTCGACCGTTGCCATTTTCGGTTTAGGCGCCGTCGGACTTGCTGTCGCTGAAGGAGCAAGAGCCAGGGGAGCATCTAAAATAATTGGGGTTGACATTAACCCCAATAAATTCATCAAAGGCCAAGCAATGGGAATCACAGATTTCATAAACCCTACCGAACCTGGAAAACCTTTGCATGAGAGAATCGGGGAAATAACAGAAGGAGGTGTGGACTATAGCTTCGAGTGTGTAGGAAACTCTGATGCTCTTCGGGAAGCCTTTCTCTGCACACATGAGGGATGGGGCTTTACTGTGATATTGGGAATTCATACAACCCCAAATATGCTTGCCCTCCATCCAATGGAACTGTTTCATGGTCGAGGAATTATTGGATCTGTGTTTGGAGGCTTCAAAGGGAAGAGCCAACTCCCCCATTTTGCCAAAGAATGCATGCGAGGGGTGGTCGATTTAGACGAGTTCATAACACATGAGCTTCCCTTCGAGAAGATAAACGATGCGTTTAAGTTGCTCGTTGAAGGCCAGTCACTGAGATGCGTTCTGCATCTTTCGGTCAACATATGCCTCGAATTGACTCAAAGGGTAAACCAGAATAACCACAACTTGTCTTTAGTTTGTTCCCAAGGATAA

Protein Analysis

412

Amino Acids

44.49

Weight (kDa)

6.28

Isoelectric Point (pI)

21.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 35 - 171 5.4e-22 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 213 - 336 1.4e-20 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 38
Acc36I ACCTGC 1 cut(s) 38
AccB1I GGYRCC 1 cut(s) 635
AccB7I CCANNNNNTGG 2 cut(s) 736, 949
AciI CCGC 6 cut(s) 95, 98, 187, 219, 426, 495
AclWI GGATC 4 cut(s) 118, 274, 279, 988
AcsI RAATTY 2 cut(s) 716, 912
AcuI CTGAAG 1 cut(s) 678
AcyI GRCGYC 1 cut(s) 636
AfaI GTAC 1 cut(s) 479
AfeI AGCGCT 1 cut(s) 160
AfiI CCNNNNNNNGG 2 cut(s) 736, 949
AgsI TTSAA 6 cut(s) 86, 292, 564, 602, 1000, 1124
AhdI GACNNNNNGTC 1 cut(s) 650
AjnI CCWGG 2 cut(s) 671, 769
AluBI AGCT 5 cut(s) 38, 182, 524, 828, 1081
AluI AGCT 5 cut(s) 38, 182, 524, 828, 1081
AlwI GGATC 4 cut(s) 118, 274, 279, 988
AlwNI CAGNNNCTG 1 cut(s) 1135
Ama87I CYCGRG 1 cut(s) 56
Aor51HI AGCGCT 1 cut(s) 160
AoxI GGCC 4 cut(s) 189, 208, 727, 1126
ApeKI GCWGC 3 cut(s) 38, 318, 578
ApoI RAATTY 2 cut(s) 716, 912
ArsI GACNNNNNNTTYG 2 cut(s) 812, 844
Asp700I GAANNNNTTC 3 cut(s) 81, 867, 957
AspLEI GCGC 2 cut(s) 161, 638
AspS9I GGNCC 3 cut(s) 91, 112, 189
AsuC2I CCSGG 3 cut(s) 57, 58, 606
AsuHPI GGTGA 6 cut(s) 19, 124, 254, 317, 388, 440
AvaI CYCGRG 1 cut(s) 56
AvaII GGWCC 2 cut(s) 91, 112
BanI GGYRCC 1 cut(s) 635
BbsI GAAGAC 3 cut(s) 14, 338, 377
BbvI GCAGC 3 cut(s) 25, 305, 565
BccI CCATC 5 cut(s) 67, 383, 416, 882, 951
BceAI ACGGC 1 cut(s) 623
BciT130I CCWGG 2 cut(s) 673, 771
BcnI CCSGG 3 cut(s) 57, 58, 606
BfaI CTAG 2 cut(s) 206, 399
BfmI CTRYAG 2 cut(s) 31, 823
BfoI RGCGCY 2 cut(s) 162, 639
BfuAI ACCTGC 1 cut(s) 38
BisI GCNGC 5 cut(s) 39, 98, 219, 319, 579
BlpI GCTNAGC 1 cut(s) 183
BlsI GCNGC 5 cut(s) 40, 99, 220, 320, 580
Bme1390I CCNGG 5 cut(s) 57, 58, 606, 673, 771
Bme18I GGWCC 2 cut(s) 91, 112
BmeRI GACNNNNNGTC 1 cut(s) 650
BmeT110I CYCGRG 1 cut(s) 56
BmgT120I GGNCC 3 cut(s) 91, 112, 189
BmiI GGNNCC 4 cut(s) 54, 63, 93, 637
BmrFI CCNGG 5 cut(s) 57, 58, 606, 673, 771
BmsI GCATC 7 cut(s) 321, 334, 689, 841, 1093, 1130, 1159
BpiI GAAGAC 3 cut(s) 14, 338, 377
BpmI CTGGAG 2 cut(s) 509, 588
Bpu1102I GCTNAGC 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 515
BpuMI CCSGG 3 cut(s) 57, 58, 606
BsaBI GATNNNNATC 1 cut(s) 284
BsaHI GRCGYC 1 cut(s) 636
BsaJI CCNNGG 5 cut(s) 56, 57, 417, 672, 1228
BsaWI WCCGGW 1 cut(s) 14
Bsc4I CCNNNNNNNGG 2 cut(s) 736, 949
Bse1I ACTGG 2 cut(s) 571, 1129
Bse3DI GCAATG 2 cut(s) 542, 741
Bse8I GATNNNNATC 1 cut(s) 284
BseBI CCWGG 2 cut(s) 673, 771
BseDI CCNNGG 5 cut(s) 56, 57, 417, 672, 1228
BseGI GGATG 3 cut(s) 427, 893, 943
BseJI GATNNNNATC 1 cut(s) 284
BseLI CCNNNNNNNGG 2 cut(s) 736, 949
BseMI GCAATG 2 cut(s) 542, 741
BseMII CTCAG 5 cut(s) 169, 197, 469, 562, 1127
BseNI ACTGG 2 cut(s) 571, 1129
BseXI GCAGC 3 cut(s) 25, 305, 565
BsgI GTGCAG 1 cut(s) 859
Bsh1285I CGRYCG 1 cut(s) 615
BshFI GGCC 4 cut(s) 191, 210, 729, 1128
BshNI GGYRCC 1 cut(s) 635
BsiEI CGRYCG 1 cut(s) 615
BsiHKCI CYCGRG 1 cut(s) 56
BsiSI CCGG 4 cut(s) 15, 57, 222, 606
BslI CCNNNNNNNGG 2 cut(s) 736, 949
BsmI GAATGC 2 cut(s) 201, 1040
BsnI GGCC 4 cut(s) 191, 210, 729, 1128
BsoBI CYCGRG 1 cut(s) 56
Bsp143I GATC 5 cut(s) 123, 151, 271, 279, 980
Bsp1720I GCTNAGC 1 cut(s) 183
BspACI CCGC 6 cut(s) 95, 98, 187, 219, 426, 495
BspANI GGCC 4 cut(s) 191, 210, 729, 1128
BspCNI CTCAG 5 cut(s) 168, 196, 468, 561, 1128
BspLI GGNNCC 4 cut(s) 54, 63, 93, 637
BspMAI CTGCAG 1 cut(s) 35
BspMI ACCTGC 1 cut(s) 38
BspPI GGATC 4 cut(s) 118, 274, 279, 988
BspQI GCTCTTC 2 cut(s) 861, 1001
BspT107I GGYRCC 1 cut(s) 635
BsrDI GCAATG 2 cut(s) 542, 741
BsrI ACTGG 2 cut(s) 571, 1129
BssECI CCNNGG 5 cut(s) 56, 57, 417, 672, 1228
BssMI GATC 5 cut(s) 123, 151, 271, 279, 980
BssNI GRCGYC 1 cut(s) 636
BssT1I CCWWGG 2 cut(s) 417, 1228
Bst2UI CCWGG 2 cut(s) 673, 771
Bst4CI ACNGT 6 cut(s) 376, 386, 484, 616, 901, 957
Bst6I CTCTTC 3 cut(s) 134, 861, 1001
BstACI GRCGYC 1 cut(s) 636
BstAPI GCANNNNNTGC 1 cut(s) 318
BstC8I GCNNGC 4 cut(s) 189, 323, 936, 1040
BstDEI CTNAG 5 cut(s) 155, 183, 455, 548, 1136
BstF5I GGATG 3 cut(s) 427, 893, 943
BstH2I RGCGCY 2 cut(s) 162, 639
BstHHI GCGC 2 cut(s) 161, 638
BstKTI GATC 5 cut(s) 126, 154, 274, 282, 983
BstMBI GATC 5 cut(s) 123, 151, 271, 279, 980
BstMCI CGRYCG 1 cut(s) 615
BstMWI GCNNNNNNNGC 5 cut(s) 188, 207, 318, 662, 677
BstNI CCWGG 2 cut(s) 673, 771
BstNSI RCATGY 1 cut(s) 1042
BstSCI CCNGG 5 cut(s) 55, 56, 604, 671, 769
BstSFI CTRYAG 2 cut(s) 31, 823
BstV1I GCAGC 3 cut(s) 25, 305, 565
BstV2I GAAGAC 3 cut(s) 14, 338, 377
BstX2I RGATCY 2 cut(s) 123, 980
BstYI RGATCY 2 cut(s) 123, 980
BsuRI GGCC 4 cut(s) 191, 210, 729, 1128
BtsCI GGATG 3 cut(s) 427, 893, 943
BtsIMutI CAGTG 3 cut(s) 147, 391, 1133
BveI ACCTGC 1 cut(s) 38
Cac8I GCNNGC 4 cut(s) 189, 323, 936, 1040
CaiI CAGNNNCTG 1 cut(s) 1135
CfoI GCGC 2 cut(s) 161, 638
Cfr13I GGNCC 3 cut(s) 91, 112, 189
Cfr9I CCCGGG 1 cut(s) 56
Csp6I GTAC 1 cut(s) 478
CviAII CATG 9 cut(s) 212, 259, 275, 582, 785, 881, 962, 1039, 1076
CviQI GTAC 1 cut(s) 478
DdeI CTNAG 5 cut(s) 155, 183, 455, 548, 1136
DinI GGCGCC 1 cut(s) 637
DpnI GATC 5 cut(s) 125, 153, 273, 281, 982
DpnII GATC 5 cut(s) 123, 151, 271, 279, 980
DriI GACNNNNNGTC 1 cut(s) 650
Eam1104I CTCTTC 3 cut(s) 134, 861, 1001
Eam1105I GACNNNNNGTC 1 cut(s) 650
EarI CTCTTC 3 cut(s) 134, 861, 1001
EciI GGCGGA 1 cut(s) 484
Eco130I CCWWGG 2 cut(s) 417, 1228
Eco47I GGWCC 2 cut(s) 91, 112
Eco47III AGCGCT 1 cut(s) 160
Eco57I CTGAAG 1 cut(s) 678
Eco88I CYCGRG 1 cut(s) 56
EcoRI GAATTC 1 cut(s) 912
EcoRII CCWGG 2 cut(s) 671, 769
EcoT14I CCWWGG 2 cut(s) 417, 1228
EcoT22I ATGCAT 1 cut(s) 1040
EgeI GGCGCC 1 cut(s) 637
EheI GGCGCC 1 cut(s) 637
ErhI CCWWGG 2 cut(s) 417, 1228
FaeI CATG 9 cut(s) 215, 262, 278, 585, 788, 884, 965, 1042, 1079
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FatI CATG 9 cut(s) 211, 258, 274, 581, 784, 880, 961, 1038, 1075
FauI CCCGC 2 cut(s) 102, 180
FauNDI CATATG 1 cut(s) 1166
Fnu4HI GCNGC 5 cut(s) 39, 98, 219, 319, 579
FokI GGATG 3 cut(s) 434, 900, 930
Fsp4HI GCNGC 5 cut(s) 39, 98, 219, 319, 579
FspBI CTAG 2 cut(s) 206, 399
GlaI GCGC 2 cut(s) 160, 637
GluI GCNGC 5 cut(s) 39, 98, 219, 319, 579
GsuI CTGGAG 2 cut(s) 509, 588
HaeII RGCGCY 2 cut(s) 162, 639
HaeIII GGCC 4 cut(s) 191, 210, 729, 1128
HapII CCGG 4 cut(s) 15, 57, 222, 606
HhaI GCGC 2 cut(s) 161, 638
Hin1I GRCGYC 1 cut(s) 636
Hin1II CATG 9 cut(s) 215, 262, 278, 585, 788, 884, 965, 1042, 1079
Hin6I GCGC 2 cut(s) 159, 636
HinP1I GCGC 2 cut(s) 159, 636
HincII GTYRAC 2 cut(s) 700, 1162
HindII GTYRAC 2 cut(s) 700, 1162
HinfI GANTC 6 cut(s) 117, 491, 515, 741, 792, 1180
HpaII CCGG 4 cut(s) 15, 57, 222, 606
HphI GGTGA 6 cut(s) 19, 124, 254, 317, 388, 440
Hpy166II GTNNAC 7 cut(s) 91, 361, 480, 700, 820, 1162, 1192
Hpy188I TCNGA 5 cut(s) 116, 330, 520, 644, 850
Hpy188III TCNNGA 6 cut(s) 121, 488, 508, 532, 860, 1090
Hpy8I GTNNAC 7 cut(s) 91, 361, 480, 700, 820, 1162, 1192
Hpy99I CGWCG 1 cut(s) 644
HpyAV CCTTC 6 cut(s) 239, 260, 653, 803, 1096, 1118
HpyCH4III ACNGT 6 cut(s) 376, 386, 484, 616, 901, 957
HpyCH4V TGCA 8 cut(s) 33, 312, 321, 581, 784, 876, 1038, 1150
HpyF10VI GCNNNNNNNGC 5 cut(s) 188, 207, 318, 662, 677
HpyF3I CTNAG 5 cut(s) 155, 183, 455, 548, 1136
Hsp92I GRCGYC 1 cut(s) 636
Hsp92II CATG 9 cut(s) 215, 262, 278, 585, 788, 884, 965, 1042, 1079
HspAI GCGC 2 cut(s) 159, 636
KasI GGCGCC 1 cut(s) 635
Kzo9I GATC 5 cut(s) 123, 151, 271, 279, 980
LguI GCTCTTC 2 cut(s) 861, 1001
LmnI GCTCC 4 cut(s) 61, 529, 662, 677
Lsp1109I GCAGC 3 cut(s) 25, 305, 565
LweI GCATC 7 cut(s) 321, 334, 689, 841, 1093, 1130, 1159
MaeI CTAG 2 cut(s) 206, 399
MaeIII GTNAC 5 cut(s) 143, 250, 305, 344, 1131
MalI GATC 5 cut(s) 125, 153, 273, 281, 982
MboI GATC 5 cut(s) 123, 151, 271, 279, 980
MboII GAAGA 9 cut(s) 19, 121, 280, 343, 382, 547, 848, 1018, 1105
MflI RGATCY 2 cut(s) 123, 980
MluCI AATT 6 cut(s) 225, 690, 716, 912, 972, 1175
Mly113I GGCGCC 1 cut(s) 636
MlyI GAGTC 3 cut(s) 500, 509, 1174
MmeI TCCRAC 1 cut(s) 622
Mph1103I ATGCAT 1 cut(s) 1040
MroXI GAANNNNTTC 3 cut(s) 81, 867, 957
MseI TTAA 2 cut(s) 705, 1110
MslI CAYNNNNRTG 1 cut(s) 1138
MspA1I CMGCKG 1 cut(s) 187
MspI CCGG 4 cut(s) 15, 57, 222, 606
MspR9I CCNGG 5 cut(s) 57, 58, 606, 673, 771
Mva1269I GAATGC 2 cut(s) 201, 1040
MvaI CCWGG 2 cut(s) 673, 771
MwoI GCNNNNNNNGC 5 cut(s) 188, 207, 318, 662, 677
NarI GGCGCC 1 cut(s) 636
NciI CCSGG 3 cut(s) 57, 58, 606
NdeI CATATG 1 cut(s) 1166
NdeII GATC 5 cut(s) 123, 151, 271, 279, 980
NlaIII CATG 9 cut(s) 215, 262, 278, 585, 788, 884, 965, 1042, 1079
NlaIV GGNNCC 4 cut(s) 54, 63, 93, 637
NmuCI GTSAC 4 cut(s) 143, 250, 305, 1131
NsiI ATGCAT 1 cut(s) 1040
NspI RCATGY 1 cut(s) 1042
PaeI GCATGC 1 cut(s) 1042
PaqCI CACCTGC 1 cut(s) 38
PciSI GCTCTTC 2 cut(s) 861, 1001
PcsI WCGNNNNNNNCGW 1 cut(s) 1059
PctI GAATGC 2 cut(s) 201, 1040
PdmI GAANNNNTTC 3 cut(s) 81, 867, 957
PfeI GAWTC 3 cut(s) 117, 741, 792
PflMI CCANNNNNTGG 2 cut(s) 736, 949
PkrI GCNGC 5 cut(s) 40, 99, 220, 320, 580
PleI GAGTC 3 cut(s) 499, 509, 1174
PluTI GGCGCC 1 cut(s) 639
PpsI GAGTC 3 cut(s) 499, 509, 1174
Psp6I CCWGG 2 cut(s) 671, 769
PspGI CCWGG 2 cut(s) 671, 769
PspN4I GGNNCC 4 cut(s) 54, 63, 93, 637
PspPI GGNCC 3 cut(s) 91, 112, 189
PstI CTGCAG 1 cut(s) 35
PstNI CAGNNNCTG 1 cut(s) 1135
PsuI RGATCY 2 cut(s) 123, 980
RsaI GTAC 1 cut(s) 479
RsaNI GTAC 1 cut(s) 478
RseI CAYNNNNRTG 1 cut(s) 1138
SapI GCTCTTC 2 cut(s) 861, 1001
SaqAI TTAA 2 cut(s) 705, 1110
SatI GCNGC 5 cut(s) 39, 98, 219, 319, 579
Sau3AI GATC 5 cut(s) 123, 151, 271, 279, 980
Sau96I GGNCC 3 cut(s) 91, 112, 189
SchI GAGTC 3 cut(s) 500, 509, 1174
ScrFI CCNGG 5 cut(s) 57, 58, 606, 673, 771
SfaNI GCATC 7 cut(s) 321, 334, 689, 841, 1093, 1130, 1159
SfcI CTRYAG 2 cut(s) 31, 823
SfoI GGCGCC 1 cut(s) 637
SinI GGWCC 2 cut(s) 91, 112
SmaI CCCGGG 1 cut(s) 58
SmiMI CAYNNNNRTG 1 cut(s) 1138
SmlI CTYRAG 1 cut(s) 530
SmoI CTYRAG 1 cut(s) 530
SphI GCATGC 1 cut(s) 1042
Sse9I AATT 6 cut(s) 225, 690, 716, 912, 972, 1175
SsiI CCGC 6 cut(s) 95, 98, 187, 219, 426, 495
SspDI GGCGCC 1 cut(s) 635
SspMI CTAG 2 cut(s) 206, 399
StyD4I CCNGG 5 cut(s) 55, 56, 604, 671, 769
StyI CCWWGG 2 cut(s) 417, 1228
TaaI ACNGT 6 cut(s) 376, 386, 484, 616, 901, 957
TaqI TCGA 6 cut(s) 611, 831, 967, 1053, 1089, 1173
TaqII GACCGA 1 cut(s) 1147
TasI AATT 6 cut(s) 225, 690, 716, 912, 972, 1175
TatI WGTACW 1 cut(s) 477
TauI GCSGC 2 cut(s) 100, 221
TfiI GAWTC 3 cut(s) 117, 741, 792
Tru1I TTAA 2 cut(s) 705, 1110
Tru9I TTAA 2 cut(s) 705, 1110
TscAI CASTG 3 cut(s) 154, 391, 1140
TseFI GTSAC 4 cut(s) 143, 250, 305, 1131
TseI GCWGC 3 cut(s) 38, 318, 578
Tsp45I GTSAC 4 cut(s) 143, 250, 305, 1131
TspMI CCCGGG 1 cut(s) 56
TspRI CASTG 3 cut(s) 154, 391, 1140
Van91I CCANNNNNTGG 2 cut(s) 736, 949
VpaK11BI GGWCC 2 cut(s) 91, 112
XapI RAATTY 2 cut(s) 716, 912
XceI RCATGY 1 cut(s) 1042
XmaI CCCGGG 1 cut(s) 56
XmnI GAANNNNTTC 3 cut(s) 81, 867, 957
XspI CTAG 2 cut(s) 206, 399
Zsp2I ATGCAT 1 cut(s) 1040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.