Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005326

Physical Location & Seq

Genomic Coordinates Reverse (-)

62193123 .. 62197859

Gene Structure 4737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004777

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGAGAGGACCACCGGAAAGGTGATCACTTGCAAAGCTGCTGTTGTTTGGGGTCCTGGGGAGCCTTTTGTGATGGAACAAGTTCAAGTTGACCCGCCGCAGAAACTGGAGGTCCGAGTCAAGATCCTCTTCACCTCAATCTGTCACACTGATCTTAGTGCTTGGAAAGGAGAGAATGAAGCTCAACGAGCGTTTCCTCGAATTCTAGGTCATGAAGCAGCCGGAATTGTTGAGAGCGTTGGTGAAGGTGTGACAGACATGAAAGAAGGGGATCATGTGATCCCTATTTTCAACGGAGAGTGCGGTTACTGCATCTGCTGCAGGCATCAGAAAACTAACATTTGCAACAACTTTGGAGTAAACCCAATGAAGAGGGTGATGAACCGCGACGGTAAAACAAGGTTCTCAATAATAACAAAGGAGGGTGACAAAAAACCCATATATCATTTTCTTAACACCTCAACCTTCAGCGAGTACACAGTTCTTGAGTCCGCTTGTGTTGTCGAGATTGACTCCGAAGCTCCCCTCAAGAAGATGACGTTGCTCAGTTGCGTTGCTTCAACTGGAGTTGGTGCTGCATGGAATACTGCTGATGTTCAACCTGGCTCAACAGTCGCCATTTTTGGTTTAGGTGCCATTGGACTTGCCGTTGCTGAAGGAACCAAAGCTAGAGGAGCATCTAAAATAATTGGTGTTGACATGAACCCTAATAAATTCATCAAAGGCCAAGCAATGGGAGTCACAGATTTCATAAACCCCCGCGACCCAGGAAAGCCTTTGCATGAGGTCAGTTCTATGGAAATAACAGAAGGAGGTGTGGACTATAGCTTTGAGTGTGTAGGAAACTCCGATGTTCTCCGGGAAGCCTTTCTTTCCACACATGAGGGATGGGGGTGTACTGTGATATTGGGAATTCATGCAACACCAAAAATGCTTCCCCTCCATCCAATGGAGTTGTTTCATGGTCGAGGAATTATTGGATCTGTGTTTGGAGGCTTCAAAGGGAAGAGCCAACTCCCCCGTTTTGCCAAAGAATGCATGCAAGGGGTGGTCGATTTAGACGAGTTCATAACACATGAGCTTCCCTTCGAGAAGATAAATGATGCGTTTAAGTTGCTCGTTGAAGGCCAGTCACTGAGATGCGTTCTGCACCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00625 ko00626 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00071 map00350 map00625 map00626 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

386

Amino Acids

41.93

Weight (kDa)

6.08

Isoelectric Point (pI)

21.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	37 - 169	2.2e-21	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	212 - 336	5.5e-19	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32780 AT1G64710 AT1G64710 AT1G64710
fragaria_vesca	FvH4_5g10640 FvH4_5g10640 FvH4_5g10640
malus_domestica	MD06G1121600.v1.1
prunus_persica	Prupe.5G132300_v2.0.a1
pyrus_communis	pycom06g11270
rosa_chinensis	RchiOBHm_Chr7g0187491 RchiOBHm_Chr7g0187501
rosa_laevigata	RLG00000004776 RLG00000004777
rosa_multiflora	Rmu_sc0001230.1_g000002 Rmu_sc0019127.1_g000001
rosa_roxburghii	Rroxscaffold_3G00267380 Rroxscaffold_3G00267390
rosa_rugosa	Rorug06G0482000
rosa_samantha	Rh7AG086500 Rh7AG086700 Rh7BG088100 Rh7BG088200 Rh7CG087400 Rh7CG087500 Rh7DG089000 Rh7DG089100
rosa_wichuraiana	Rw7G007630 Rw7G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	632
AccB7I	CCANNNNNTGG	2 cut(s)	733, 949
AccII	CGCG	2 cut(s)	387, 762
AciI	CCGC	6 cut(s)	95, 98, 303, 385, 492, 760
AclWI	GGATC	4 cut(s)	118, 274, 279, 988
AcsI	RAATTY	3 cut(s)	201, 713, 912
AcuI	CTGAAG	2 cut(s)	451, 675
AfaI	GTAC	2 cut(s)	476, 898
AfiI	CCNNNNNNNGG	2 cut(s)	733, 949
AgsI	TTSAA	6 cut(s)	86, 292, 561, 599, 1000, 1124
AjnI	CCWGG	3 cut(s)	55, 601, 766
AluBI	AGCT	6 cut(s)	38, 182, 521, 668, 828, 1081
AluI	AGCT	6 cut(s)	38, 182, 521, 668, 828, 1081
AlwI	GGATC	4 cut(s)	118, 274, 279, 988
AlwNI	CAGNNNCTG	2 cut(s)	106, 1135
AoxI	GGCC	2 cut(s)	724, 1126
ApeKI	GCWGC	4 cut(s)	38, 218, 318, 575
ApoI	RAATTY	3 cut(s)	201, 713, 912
ArsI	GACNNNNNNTTYG	4 cut(s)	193, 225, 812, 844
Asp700I	GAANNNNTTC	2 cut(s)	81, 867
AspS9I	GGNCC	3 cut(s)	9, 53, 112
AsuC2I	CCSGG	1 cut(s)	860
AsuHPI	GGTGA	5 cut(s)	34, 124, 254, 388, 437
AvaII	GGWCC	3 cut(s)	9, 53, 112
BanI	GGYRCC	1 cut(s)	632
BbvI	GCAGC	4 cut(s)	25, 230, 305, 562
BccI	CCATC	3 cut(s)	67, 882, 951
BceAI	ACGGC	1 cut(s)	632
BciT130I	CCWGG	3 cut(s)	57, 603, 768
BclI	TGATCA	1 cut(s)	24
BcnI	CCSGG	1 cut(s)	860
BfaI	CTAG	2 cut(s)	206, 669
BfmI	CTRYAG	2 cut(s)	319, 823
BisI	GCNGC	5 cut(s)	39, 98, 219, 319, 576
BlsI	GCNGC	5 cut(s)	40, 99, 220, 320, 577
Bme1390I	CCNGG	4 cut(s)	57, 603, 768, 860
Bme18I	GGWCC	3 cut(s)	9, 53, 112
BmgT120I	GGNCC	3 cut(s)	9, 53, 112
BmiI	GGNNCC	4 cut(s)	54, 63, 634, 661
BmrFI	CCNGG	4 cut(s)	57, 603, 768, 860
BmsI	GCATC	5 cut(s)	321, 334, 686, 1093, 1130
BplI	GAGNNNNNCTC	2 cut(s)	497, 529
BpmI	CTGGAG	2 cut(s)	128, 585
BpuEI	CTTGAG	2 cut(s)	506, 512
BpuMI	CCSGG	1 cut(s)	860
BsaJI	CCNNGG	2 cut(s)	56, 766
BsaWI	WCCGGW	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	2 cut(s)	733, 949
Bse1I	ACTGG	3 cut(s)	111, 568, 1129
Bse3DI	GCAATG	1 cut(s)	738
BseBI	CCWGG	3 cut(s)	57, 603, 768
BseDI	CCNNGG	2 cut(s)	56, 766
BseGI	GGATG	2 cut(s)	893, 943
BseLI	CCNNNNNNNGG	2 cut(s)	733, 949
BseMI	GCAATG	1 cut(s)	738
BseMII	CTCAG	2 cut(s)	559, 1127
BseNI	ACTGG	3 cut(s)	111, 568, 1129
BseRI	GAGGAG	1 cut(s)	687
BseXI	GCAGC	4 cut(s)	25, 230, 305, 562
BsgI	GTGCAG	1 cut(s)	1133
Bsh1236I	CGCG	2 cut(s)	387, 762
BshFI	GGCC	2 cut(s)	726, 1128
BshNI	GGYRCC	1 cut(s)	632
BsiSI	CCGG	3 cut(s)	15, 222, 859
BslI	CCNNNNNNNGG	2 cut(s)	733, 949
BsmI	GAATGC	1 cut(s)	1040
BsnI	GGCC	2 cut(s)	726, 1128
Bsp143I	GATC	6 cut(s)	24, 123, 151, 271, 279, 980
BspACI	CCGC	6 cut(s)	95, 98, 303, 385, 492, 760
BspANI	GGCC	2 cut(s)	726, 1128
BspCNI	CTCAG	2 cut(s)	558, 1128
BspFNI	CGCG	2 cut(s)	387, 762
BspHI	TCATGA	1 cut(s)	211
BspLI	GGNNCC	4 cut(s)	54, 63, 634, 661
BspMAI	CTGCAG	1 cut(s)	323
BspPI	GGATC	4 cut(s)	118, 274, 279, 988
BspQI	GCTCTTC	1 cut(s)	1001
BspT107I	GGYRCC	1 cut(s)	632
BsrDI	GCAATG	1 cut(s)	738
BsrI	ACTGG	3 cut(s)	111, 568, 1129
BssECI	CCNNGG	2 cut(s)	56, 766
BssMI	GATC	6 cut(s)	24, 123, 151, 271, 279, 980
Bst2UI	CCWGG	3 cut(s)	57, 603, 768
Bst4CI	ACNGT	4 cut(s)	392, 481, 613, 901
Bst6I	CTCTTC	3 cut(s)	134, 365, 1001
BstAPI	GCANNNNNTGC	1 cut(s)	318
BstC8I	GCNNGC	2 cut(s)	323, 1040
BstDEI	CTNAG	3 cut(s)	155, 545, 1136
BstF5I	GGATG	2 cut(s)	893, 943
BstFNI	CGCG	2 cut(s)	387, 762
BstKTI	GATC	6 cut(s)	27, 126, 154, 274, 282, 983
BstMBI	GATC	6 cut(s)	24, 123, 151, 271, 279, 980
BstMWI	GCNNNNNNNGC	4 cut(s)	188, 309, 318, 674
BstNI	CCWGG	3 cut(s)	57, 603, 768
BstNSI	RCATGY	1 cut(s)	1042
BstSCI	CCNGG	4 cut(s)	55, 601, 766, 858
BstSFI	CTRYAG	2 cut(s)	319, 823
BstUI	CGCG	2 cut(s)	387, 762
BstV1I	GCAGC	4 cut(s)	25, 230, 305, 562
BstX2I	RGATCY	2 cut(s)	123, 980
BstYI	RGATCY	2 cut(s)	123, 980
BsuRI	GGCC	2 cut(s)	726, 1128
BtsCI	GGATG	2 cut(s)	893, 943
BtsIMutI	CAGTG	2 cut(s)	147, 1133
Cac8I	GCNNGC	2 cut(s)	323, 1040
CaiI	CAGNNNCTG	2 cut(s)	106, 1135
CciI	TCATGA	1 cut(s)	211
Cfr13I	GGNCC	3 cut(s)	9, 53, 112
Csp6I	GTAC	2 cut(s)	475, 897
CviQI	GTAC	2 cut(s)	475, 897
DdeI	CTNAG	3 cut(s)	155, 545, 1136
DpnI	GATC	6 cut(s)	26, 125, 153, 273, 281, 982
DpnII	GATC	6 cut(s)	24, 123, 151, 271, 279, 980
Eam1104I	CTCTTC	3 cut(s)	134, 365, 1001
EarI	CTCTTC	3 cut(s)	134, 365, 1001
Eco47I	GGWCC	3 cut(s)	9, 53, 112
Eco57I	CTGAAG	2 cut(s)	451, 675
EcoO109I	RGGNCCY	1 cut(s)	53
EcoRI	GAATTC	2 cut(s)	201, 912
EcoRII	CCWGG	3 cut(s)	55, 601, 766
EcoT22I	ATGCAT	1 cut(s)	1040
FalI	AAGNNNNNCTT	4 cut(s)	113, 145, 855, 887
FauI	CCCGC	2 cut(s)	102, 767
FbaI	TGATCA	1 cut(s)	24
Fnu4HI	GCNGC	5 cut(s)	39, 98, 219, 319, 576
FokI	GGATG	2 cut(s)	900, 930
Fsp4HI	GCNGC	5 cut(s)	39, 98, 219, 319, 576
FspBI	CTAG	2 cut(s)	206, 669
GluI	GCNGC	5 cut(s)	39, 98, 219, 319, 576
GsuI	CTGGAG	2 cut(s)	128, 585
HaeIII	GGCC	2 cut(s)	726, 1128
HapII	CCGG	3 cut(s)	15, 222, 859
HincII	GTYRAC	2 cut(s)	91, 697
HindII	GTYRAC	2 cut(s)	91, 697
HinfI	GANTC	4 cut(s)	117, 488, 512, 738
HpaII	CCGG	3 cut(s)	15, 222, 859
HphI	GGTGA	5 cut(s)	34, 124, 254, 388, 437
Hpy166II	GTNNAC	6 cut(s)	91, 361, 477, 697, 820, 897
Hpy188I	TCNGA	4 cut(s)	116, 330, 517, 850
Hpy188III	TCNNGA	6 cut(s)	121, 212, 485, 505, 529, 1090
Hpy8I	GTNNAC	6 cut(s)	91, 361, 477, 697, 820, 897
Hpy99I	CGWCG	1 cut(s)	392
HpyAV	CCTTC	7 cut(s)	239, 260, 475, 650, 803, 1096, 1118
HpyCH4III	ACNGT	4 cut(s)	392, 481, 613, 901
HpyCH4IV	ACGT	1 cut(s)	539
HpyF10VI	GCNNNNNNNGC	4 cut(s)	188, 309, 318, 674
HpyF3I	CTNAG	3 cut(s)	155, 545, 1136
HpySE526I	ACGT	1 cut(s)	539
Ksp22I	TGATCA	1 cut(s)	24
Kzo9I	GATC	6 cut(s)	24, 123, 151, 271, 279, 980
LguI	GCTCTTC	1 cut(s)	1001
LmnI	GCTCC	3 cut(s)	61, 526, 674
Lsp1109I	GCAGC	4 cut(s)	25, 230, 305, 562
LweI	GCATC	5 cut(s)	321, 334, 686, 1093, 1130
MaeI	CTAG	2 cut(s)	206, 669
MaeII	ACGT	1 cut(s)	539
MaeIII	GTNAC	6 cut(s)	143, 250, 305, 425, 739, 1131
MalI	GATC	6 cut(s)	26, 125, 153, 273, 281, 982
MboI	GATC	6 cut(s)	24, 123, 151, 271, 279, 980
MboII	GAAGA	5 cut(s)	121, 382, 544, 1018, 1105
MflI	RGATCY	2 cut(s)	123, 980
MluCI	AATT	6 cut(s)	201, 225, 687, 713, 912, 972
MlyI	GAGTC	4 cut(s)	126, 497, 506, 747
Mph1103I	ATGCAT	1 cut(s)	1040
MroXI	GAANNNNTTC	2 cut(s)	81, 867
MseI	TTAA	2 cut(s)	453, 1110
MslI	CAYNNNNRTG	1 cut(s)	1138
MspI	CCGG	3 cut(s)	15, 222, 859
MspR9I	CCNGG	4 cut(s)	57, 603, 768, 860
Mva1269I	GAATGC	1 cut(s)	1040
MvaI	CCWGG	3 cut(s)	57, 603, 768
MvnI	CGCG	2 cut(s)	387, 762
MwoI	GCNNNNNNNGC	4 cut(s)	188, 309, 318, 674
NciI	CCSGG	1 cut(s)	860
NdeII	GATC	6 cut(s)	24, 123, 151, 271, 279, 980
NlaIV	GGNNCC	4 cut(s)	54, 63, 634, 661
NmuCI	GTSAC	5 cut(s)	143, 250, 425, 739, 1131
NsiI	ATGCAT	1 cut(s)	1040
NspI	RCATGY	1 cut(s)	1042
PaeI	GCATGC	1 cut(s)	1042
PagI	TCATGA	1 cut(s)	211
PciSI	GCTCTTC	1 cut(s)	1001
PcsI	WCGNNNNNNNCGW	1 cut(s)	1059
PctI	GAATGC	1 cut(s)	1040
PdmI	GAANNNNTTC	2 cut(s)	81, 867
PflMI	CCANNNNNTGG	2 cut(s)	733, 949
PfoI	TCCNGGA	1 cut(s)	858
PkrI	GCNGC	5 cut(s)	40, 99, 220, 320, 577
PleI	GAGTC	4 cut(s)	125, 496, 506, 746
PpsI	GAGTC	4 cut(s)	125, 496, 506, 746
PpuMI	RGGWCCY	1 cut(s)	53
Psp5II	RGGWCCY	1 cut(s)	53
Psp6I	CCWGG	3 cut(s)	55, 601, 766
PspGI	CCWGG	3 cut(s)	55, 601, 766
PspN4I	GGNNCC	4 cut(s)	54, 63, 634, 661
PspPI	GGNCC	3 cut(s)	9, 53, 112
PspPPI	RGGWCCY	1 cut(s)	53
PstI	CTGCAG	1 cut(s)	323
PstNI	CAGNNNCTG	2 cut(s)	106, 1135
PsuI	RGATCY	2 cut(s)	123, 980
RsaI	GTAC	2 cut(s)	476, 898
RsaNI	GTAC	2 cut(s)	475, 897
RseI	CAYNNNNRTG	1 cut(s)	1138
SapI	GCTCTTC	1 cut(s)	1001
SaqAI	TTAA	2 cut(s)	453, 1110
SatI	GCNGC	5 cut(s)	39, 98, 219, 319, 576
Sau3AI	GATC	6 cut(s)	24, 123, 151, 271, 279, 980
Sau96I	GGNCC	3 cut(s)	9, 53, 112
SchI	GAGTC	4 cut(s)	126, 497, 506, 747
ScrFI	CCNGG	4 cut(s)	57, 603, 768, 860
SfaNI	GCATC	5 cut(s)	321, 334, 686, 1093, 1130
SfcI	CTRYAG	2 cut(s)	319, 823
SinI	GGWCC	3 cut(s)	9, 53, 112
SmiMI	CAYNNNNRTG	1 cut(s)	1138
SmlI	CTYRAG	2 cut(s)	485, 527
SmoI	CTYRAG	2 cut(s)	485, 527
SphI	GCATGC	1 cut(s)	1042
Sse9I	AATT	6 cut(s)	201, 225, 687, 713, 912, 972
SsiI	CCGC	6 cut(s)	95, 98, 303, 385, 492, 760
SspMI	CTAG	2 cut(s)	206, 669
StyD4I	CCNGG	4 cut(s)	55, 601, 766, 858
TaaI	ACNGT	4 cut(s)	392, 481, 613, 901
TaiI	ACGT	1 cut(s)	542
TaqI	TCGA	5 cut(s)	199, 504, 967, 1053, 1089
TasI	AATT	6 cut(s)	201, 225, 687, 713, 912, 972
TatI	WGTACW	2 cut(s)	474, 896
TauI	GCSGC	1 cut(s)	100
Tru1I	TTAA	2 cut(s)	453, 1110
Tru9I	TTAA	2 cut(s)	453, 1110
TscAI	CASTG	2 cut(s)	154, 1140
TseFI	GTSAC	5 cut(s)	143, 250, 425, 739, 1131
TseI	GCWGC	4 cut(s)	38, 218, 318, 575
Tsp45I	GTSAC	5 cut(s)	143, 250, 425, 739, 1131
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	2 cut(s)	154, 1140
Van91I	CCANNNNNTGG	2 cut(s)	733, 949
VpaK11BI	GGWCC	3 cut(s)	9, 53, 112
XapI	RAATTY	3 cut(s)	201, 713, 912
XceI	RCATGY	1 cut(s)	1042
XmnI	GAANNNNTTC	2 cut(s)	81, 867
XspI	CTAG	2 cut(s)	206, 669
Zsp2I	ATGCAT	1 cut(s)	1040

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.