Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0005326

Physical Location & Seq

Genomic Coordinates Forward (+)

7485779 .. 7491397

Gene Structure 5619 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG089100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGAGCAGAATTGTTGAGAGCGTTGGTGAAGGTGTGACAGACATGAAAGAAGGGGATCATGTGATCCCTATCTTCAACGGGGAGTGTGGTGACTGCATCTGCTGCAAGCATCAGAAGACTAATATCTGTAACAACTTTGGAGTAAACCCGATGAAGACGGTGATGAACAGTGATGGTAAAACTAGGTTCTCCATAATAGCCAAGGATGGCGGTGATAGAAAACCCATATATCATTTTCTCAGCACATCAACTTTCAGCGAGTACACAGTTCTTGAGTCCGCCTGTGTAGTCAGGATTGACTCGGAAGCTCCCCTCAAGAAGATGGCATTGCTCAGTTGTGGTGTTTCAACTGGAGTTGGTGCTGCATGGAATGTTGCCAATGTTCAACCCGGCTCGACCGTTGCCATTTTCGGTTTAGGCGCCGTCGGACTTGCTGTTGCTGAAGGAGCAAGAGCCAGGGGAGCATCTAAAATAATTGGGGTTGACATTAACCCCAATAAATTCATCAAAGGCCAAGTAATGGGAATCACAGATTTCATAAACCCTACCGAACCTGGAAAGCCTTTGCATGAGAGAGTTGGGGAAATAACAGAAGGAGGTGTGGACTATAGCTTCGAGTGTGTAGGAAACTCTGATGTTCTTCGGGAAGCCTTTCTCTGCACACATGAGGGATGGGGTTTTACTGTGATATTGGGAATTCATGCTACCCCAAAAATGCTTGCCCTCCATCCAATGGAACTGTTTCATGGTCGAGGAATTATTGGATCTGTGTTTGGAGGCTTCAAAGGGAAGAGCCAACTCCCCCGTTTTGCCAAAGAATGCATGCGAGGGGTGGTCGATTTAGACGAGTTCATAACACATGAGCTTCCCTTCGAGAAGATAAACGATGCGTTTAAGTTGCTCGTTGAAGGCCAGTCACTGAGATGCGTTCTGCATCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00625 ko00626 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00071 map00350 map00625 map00626 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

313

Amino Acids

33.75

Weight (kDa)

6.21

Isoelectric Point (pI)

23.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	4 - 98	1.2e-06	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	141 - 264	4e-20	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32780 AT1G64710 AT1G64710 AT1G64710
fragaria_vesca	FvH4_5g10640 FvH4_5g10640 FvH4_5g10640
malus_domestica	MD06G1121600.v1.1
prunus_persica	Prupe.5G132300_v2.0.a1
pyrus_communis	pycom06g11270
rosa_chinensis	RchiOBHm_Chr7g0187491 RchiOBHm_Chr7g0187501
rosa_laevigata	RLG00000004776 RLG00000004777
rosa_multiflora	Rmu_sc0001230.1_g000002 Rmu_sc0019127.1_g000001
rosa_roxburghii	Rroxscaffold_3G00267380 Rroxscaffold_3G00267390
rosa_rugosa	Rorug06G0482000
rosa_samantha	Rh7AG086500 Rh7AG086700 Rh7BG088100 Rh7BG088200 Rh7CG087400 Rh7CG087500 Rh7DG089000 Rh7DG089100
rosa_wichuraiana	Rw7G007630 Rw7G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	419
AccB7I	CCANNNNNTGG	2 cut(s)	520, 733
AciI	CCGC	2 cut(s)	210, 279
AclWI	GGATC	3 cut(s)	58, 63, 772
AcsI	RAATTY	2 cut(s)	500, 696
AcuI	CTGAAG	1 cut(s)	462
AcyI	GRCGYC	1 cut(s)	420
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	2 cut(s)	520, 733
AgsI	TTSAA	5 cut(s)	76, 348, 386, 784, 908
AjnI	CCWGG	2 cut(s)	455, 553
AluBI	AGCT	3 cut(s)	308, 612, 865
AluI	AGCT	3 cut(s)	308, 612, 865
AlwI	GGATC	3 cut(s)	58, 63, 772
AlwNI	CAGNNNCTG	1 cut(s)	919
AoxI	GGCC	2 cut(s)	511, 910
ApeKI	GCWGC	2 cut(s)	102, 362
ApoI	RAATTY	2 cut(s)	500, 696
ArsI	GACNNNNNNTTYG	2 cut(s)	596, 628
Asp700I	GAANNNNTTC	2 cut(s)	651, 741
AspLEI	GCGC	1 cut(s)	422
AsuC2I	CCSGG	1 cut(s)	390
AsuHPI	GGTGA	4 cut(s)	38, 101, 172, 224
BanI	GGYRCC	1 cut(s)	419
BbsI	GAAGAC	2 cut(s)	122, 161
BbvI	GCAGC	2 cut(s)	89, 349
BccI	CCATC	5 cut(s)	167, 200, 316, 666, 735
BceAI	ACGGC	1 cut(s)	407
BciT130I	CCWGG	2 cut(s)	457, 555
BcnI	CCSGG	1 cut(s)	390
BfaI	CTAG	1 cut(s)	183
BfmI	CTRYAG	1 cut(s)	607
BfoI	RGCGCY	1 cut(s)	423
BisI	GCNGC	2 cut(s)	103, 363
BlsI	GCNGC	2 cut(s)	104, 364
Bme1390I	CCNGG	3 cut(s)	390, 457, 555
BmiI	GGNNCC	1 cut(s)	421
BmrFI	CCNGG	3 cut(s)	390, 457, 555
BmsI	GCATC	5 cut(s)	105, 118, 473, 877, 914
BpiI	GAAGAC	2 cut(s)	122, 161
BpmI	CTGGAG	1 cut(s)	372
BpuEI	CTTGAG	2 cut(s)	293, 299
BpuMI	CCSGG	1 cut(s)	390
BsaBI	GATNNNNATC	1 cut(s)	68
BsaHI	GRCGYC	1 cut(s)	420
BsaJI	CCNNGG	2 cut(s)	201, 456
Bsc4I	CCNNNNNNNGG	2 cut(s)	520, 733
Bse1I	ACTGG	2 cut(s)	355, 913
Bse3DI	GCAATG	1 cut(s)	326
Bse8I	GATNNNNATC	1 cut(s)	68
BseBI	CCWGG	2 cut(s)	457, 555
BseDI	CCNNGG	2 cut(s)	201, 456
BseGI	GGATG	3 cut(s)	211, 677, 727
BseJI	GATNNNNATC	1 cut(s)	68
BseLI	CCNNNNNNNGG	2 cut(s)	520, 733
BseMI	GCAATG	1 cut(s)	326
BseMII	CTCAG	3 cut(s)	253, 346, 911
BseNI	ACTGG	2 cut(s)	355, 913
BseXI	GCAGC	2 cut(s)	89, 349
BsgI	GTGCAG	1 cut(s)	643
Bsh1285I	CGRYCG	1 cut(s)	399
BshFI	GGCC	2 cut(s)	513, 912
BshNI	GGYRCC	1 cut(s)	419
BsiEI	CGRYCG	1 cut(s)	399
BsiSI	CCGG	1 cut(s)	390
BslI	CCNNNNNNNGG	2 cut(s)	520, 733
BsmI	GAATGC	1 cut(s)	824
BsnI	GGCC	2 cut(s)	513, 912
Bsp143I	GATC	3 cut(s)	55, 63, 764
BspACI	CCGC	2 cut(s)	210, 279
BspANI	GGCC	2 cut(s)	513, 912
BspCNI	CTCAG	3 cut(s)	252, 345, 912
BspLI	GGNNCC	1 cut(s)	421
BspPI	GGATC	3 cut(s)	58, 63, 772
BspQI	GCTCTTC	1 cut(s)	785
BspT107I	GGYRCC	1 cut(s)	419
BsrDI	GCAATG	1 cut(s)	326
BsrI	ACTGG	2 cut(s)	355, 913
BssECI	CCNNGG	2 cut(s)	201, 456
BssMI	GATC	3 cut(s)	55, 63, 764
BssNI	GRCGYC	1 cut(s)	420
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	2 cut(s)	457, 555
Bst4CI	ACNGT	6 cut(s)	160, 170, 268, 400, 685, 741
Bst6I	CTCTTC	1 cut(s)	785
BstACI	GRCGYC	1 cut(s)	420
BstAPI	GCANNNNNTGC	1 cut(s)	102
BstC8I	GCNNGC	3 cut(s)	107, 720, 824
BstDEI	CTNAG	3 cut(s)	239, 332, 920
BstF5I	GGATG	3 cut(s)	211, 677, 727
BstH2I	RGCGCY	1 cut(s)	423
BstHHI	GCGC	1 cut(s)	422
BstKTI	GATC	3 cut(s)	58, 66, 767
BstMBI	GATC	3 cut(s)	55, 63, 764
BstMCI	CGRYCG	1 cut(s)	399
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 446, 461
BstNI	CCWGG	2 cut(s)	457, 555
BstNSI	RCATGY	1 cut(s)	826
BstSCI	CCNGG	3 cut(s)	388, 455, 553
BstSFI	CTRYAG	1 cut(s)	607
BstV1I	GCAGC	2 cut(s)	89, 349
BstV2I	GAAGAC	2 cut(s)	122, 161
BstX2I	RGATCY	1 cut(s)	764
BstYI	RGATCY	1 cut(s)	764
BsuRI	GGCC	2 cut(s)	513, 912
BtsCI	GGATG	3 cut(s)	211, 677, 727
BtsIMutI	CAGTG	2 cut(s)	175, 917
Cac8I	GCNNGC	3 cut(s)	107, 720, 824
CaiI	CAGNNNCTG	1 cut(s)	919
CfoI	GCGC	1 cut(s)	422
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	9 cut(s)	43, 59, 366, 569, 665, 701, 746, 823, 860
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	3 cut(s)	239, 332, 920
DinI	GGCGCC	1 cut(s)	421
DpnI	GATC	3 cut(s)	57, 65, 766
DpnII	GATC	3 cut(s)	55, 63, 764
Eam1104I	CTCTTC	1 cut(s)	785
EarI	CTCTTC	1 cut(s)	785
EciI	GGCGGA	1 cut(s)	268
Eco130I	CCWWGG	1 cut(s)	201
Eco57I	CTGAAG	1 cut(s)	462
EcoRI	GAATTC	1 cut(s)	696
EcoRII	CCWGG	2 cut(s)	455, 553
EcoT14I	CCWWGG	1 cut(s)	201
EcoT22I	ATGCAT	1 cut(s)	824
EgeI	GGCGCC	1 cut(s)	421
EheI	GGCGCC	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	9 cut(s)	46, 62, 369, 572, 668, 704, 749, 826, 863
FatI	CATG	9 cut(s)	42, 58, 365, 568, 664, 700, 745, 822, 859
Fnu4HI	GCNGC	2 cut(s)	103, 363
FokI	GGATG	3 cut(s)	218, 684, 714
Fsp4HI	GCNGC	2 cut(s)	103, 363
FspBI	CTAG	1 cut(s)	183
GlaI	GCGC	1 cut(s)	421
GluI	GCNGC	2 cut(s)	103, 363
GsuI	CTGGAG	1 cut(s)	372
HaeII	RGCGCY	1 cut(s)	423
HaeIII	GGCC	2 cut(s)	513, 912
HapII	CCGG	1 cut(s)	390
HhaI	GCGC	1 cut(s)	422
Hin1I	GRCGYC	1 cut(s)	420
Hin1II	CATG	9 cut(s)	46, 62, 369, 572, 668, 704, 749, 826, 863
Hin6I	GCGC	1 cut(s)	420
HinP1I	GCGC	1 cut(s)	420
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	3 cut(s)	275, 299, 525
HpaII	CCGG	1 cut(s)	390
HphI	GGTGA	4 cut(s)	38, 101, 172, 224
Hpy166II	GTNNAC	4 cut(s)	145, 264, 484, 604
Hpy188I	TCNGA	4 cut(s)	114, 304, 428, 634
Hpy188III	TCNNGA	5 cut(s)	272, 292, 316, 644, 874
Hpy8I	GTNNAC	4 cut(s)	145, 264, 484, 604
Hpy99I	CGWCG	1 cut(s)	428
HpyAV	CCTTC	6 cut(s)	23, 44, 437, 587, 880, 902
HpyCH4III	ACNGT	6 cut(s)	160, 170, 268, 400, 685, 741
HpyCH4V	TGCA	7 cut(s)	96, 105, 365, 568, 660, 822, 934
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 446, 461
HpyF3I	CTNAG	3 cut(s)	239, 332, 920
Hsp92I	GRCGYC	1 cut(s)	420
Hsp92II	CATG	9 cut(s)	46, 62, 369, 572, 668, 704, 749, 826, 863
HspAI	GCGC	1 cut(s)	420
KasI	GGCGCC	1 cut(s)	419
Kzo9I	GATC	3 cut(s)	55, 63, 764
LguI	GCTCTTC	1 cut(s)	785
LmnI	GCTCC	3 cut(s)	313, 446, 461
LpnPI	CCDG	9 cut(s)	277, 295, 336, 403, 442, 469, 540, 567, 926
Lsp1109I	GCAGC	2 cut(s)	89, 349
LweI	GCATC	5 cut(s)	105, 118, 473, 877, 914
MaeI	CTAG	1 cut(s)	183
MaeIII	GTNAC	4 cut(s)	34, 89, 128, 915
MalI	GATC	3 cut(s)	57, 65, 766
MboI	GATC	3 cut(s)	55, 63, 764
MboII	GAAGA	7 cut(s)	64, 127, 166, 331, 632, 802, 889
MflI	RGATCY	1 cut(s)	764
MluCI	AATT	5 cut(s)	9, 474, 500, 696, 756
Mly113I	GGCGCC	1 cut(s)	420
MlyI	GAGTC	2 cut(s)	284, 293
MmeI	TCCRAC	1 cut(s)	406
MnlI	CCTC	7 cut(s)	323, 590, 661, 734, 746, 770, 821
Mph1103I	ATGCAT	1 cut(s)	824
MroXI	GAANNNNTTC	2 cut(s)	651, 741
MseI	TTAA	2 cut(s)	489, 894
MslI	CAYNNNNRTG	1 cut(s)	922
MspI	CCGG	1 cut(s)	390
MspR9I	CCNGG	3 cut(s)	390, 457, 555
Mva1269I	GAATGC	1 cut(s)	824
MvaI	CCWGG	2 cut(s)	457, 555
MwoI	GCNNNNNNNGC	3 cut(s)	102, 446, 461
NarI	GGCGCC	1 cut(s)	420
NciI	CCSGG	1 cut(s)	390
NdeII	GATC	3 cut(s)	55, 63, 764
NlaIII	CATG	9 cut(s)	46, 62, 369, 572, 668, 704, 749, 826, 863
NlaIV	GGNNCC	1 cut(s)	421
NmuCI	GTSAC	3 cut(s)	34, 89, 915
NsiI	ATGCAT	1 cut(s)	824
NspI	RCATGY	1 cut(s)	826
PaeI	GCATGC	1 cut(s)	826
PciSI	GCTCTTC	1 cut(s)	785
PcsI	WCGNNNNNNNCGW	1 cut(s)	843
PctI	GAATGC	1 cut(s)	824
PdmI	GAANNNNTTC	2 cut(s)	651, 741
PfeI	GAWTC	1 cut(s)	525
PflMI	CCANNNNNTGG	2 cut(s)	520, 733
PkrI	GCNGC	2 cut(s)	104, 364
PleI	GAGTC	2 cut(s)	283, 293
PluTI	GGCGCC	1 cut(s)	423
PpsI	GAGTC	2 cut(s)	283, 293
Psp6I	CCWGG	2 cut(s)	455, 553
PspGI	CCWGG	2 cut(s)	455, 553
PspN4I	GGNNCC	1 cut(s)	421
PstNI	CAGNNNCTG	1 cut(s)	919
PsuI	RGATCY	1 cut(s)	764
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
RseI	CAYNNNNRTG	1 cut(s)	922
SapI	GCTCTTC	1 cut(s)	785
SaqAI	TTAA	2 cut(s)	489, 894
SatI	GCNGC	2 cut(s)	103, 363
Sau3AI	GATC	3 cut(s)	55, 63, 764
SchI	GAGTC	2 cut(s)	284, 293
ScrFI	CCNGG	3 cut(s)	390, 457, 555
SetI	ASST	7 cut(s)	34, 188, 310, 556, 601, 614, 867
SfaNI	GCATC	5 cut(s)	105, 118, 473, 877, 914
SfcI	CTRYAG	1 cut(s)	607
SfoI	GGCGCC	1 cut(s)	421
SmiMI	CAYNNNNRTG	1 cut(s)	922
SmlI	CTYRAG	2 cut(s)	272, 314
SmoI	CTYRAG	2 cut(s)	272, 314
SphI	GCATGC	1 cut(s)	826
Sse9I	AATT	5 cut(s)	9, 474, 500, 696, 756
SsiI	CCGC	2 cut(s)	210, 279
SspDI	GGCGCC	1 cut(s)	419
SspMI	CTAG	1 cut(s)	183
StyD4I	CCNGG	3 cut(s)	388, 455, 553
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	6 cut(s)	160, 170, 268, 400, 685, 741
TaqI	TCGA	5 cut(s)	395, 615, 751, 837, 873
TasI	AATT	5 cut(s)	9, 474, 500, 696, 756
TatI	WGTACW	1 cut(s)	261
TfiI	GAWTC	1 cut(s)	525
Tru1I	TTAA	2 cut(s)	489, 894
Tru9I	TTAA	2 cut(s)	489, 894
TscAI	CASTG	2 cut(s)	175, 924
TseFI	GTSAC	3 cut(s)	34, 89, 915
TseI	GCWGC	2 cut(s)	102, 362
Tsp45I	GTSAC	3 cut(s)	34, 89, 915
TspDTI	ATGAA	8 cut(s)	59, 167, 179, 493, 526, 689, 734, 841
TspRI	CASTG	2 cut(s)	175, 924
Van91I	CCANNNNNTGG	2 cut(s)	520, 733
XapI	RAATTY	2 cut(s)	500, 696
XceI	RCATGY	1 cut(s)	826
XmnI	GAANNNNTTC	2 cut(s)	651, 741
XspI	CTAG	1 cut(s)	183
Zsp2I	ATGCAT	1 cut(s)	824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.