Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0005326

Physical Location & Seq

Genomic Coordinates Forward (+)

6578856 .. 6591323

Gene Structure 12468 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG086500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGAGAGGACAACCGGAAAGGTGATCACTTGCAAAGCTGCTGTTGTTTGGGGTCCTGAGGAGCCTTTTGTGATGGAACAAGTTCAAGTTGACCCGCCGCAGAAACTGGAGGTCCGAGTCAAGATCCTCTTCACCTCAATCTGTCACACTGATCTTAGTGCTTGGAAAGGAGAGAATGAAGCTCAACGAGCGTTTCCTCGAATTCTAGGTCATGAAGCAGCCGGAATTGTTGAGAGCGTTGGTGAAGGTGTGACAGACATGAAAGAAGGGGATCATGTGATCCCTATTTTCAACGGAGAGTGCGGTTACTGCATCTGCTGCAGGCATCAGAAAACTAACATTTGCAACAACTTTGGAGTAAACCCAATGAAGAGGGTGATGAACAGTGACGGTAAAACAAGGTTCTCAATAATAACAAAGGAGGGTGACAAAAAACCCATATATCATTTTCTTAACACTTCAACCTTCAGCGAGTACACAGTTCTTGAGTCCGCTTGTGTTGTCAAGATTGACTCGGAAGCTCCCCTCAAGAAGATGACCTTGCTCAGTTGCGGTGCTTCAACTGGAGTTGGTGCTGCATGGAATACTGCTGATGTTCAACCCGGCTCAACAGTCGCCATTTTTGGTTTAGGTGCCATTGGACTTGCCGTTGCTGAAGGAGCCAAAGCTAGAGGAGCATCTACAATAATTGGTGTTGACATGAACCCTAATAAATTCATCAAAGGCCAAGCAATGGGAGTCACAGATTTCATAAACACCCGCGACCCAGGAAAGCCTTTGCATGAGAGAATCAGGGAAATAACAAAAGGAGGTGTGGACTATAGCTTTGAGTGTGTAGGAAACTCCGATGTTCTCCGGGAAGCCTTTCTTTCCACACATGAGGGATGGGGGTGTACTGTGATATTGGGAATTCATGCAACACCAAAAATGCTTCCCCTCCATCCAATGGAGTTGTTTCATGGTCGAGGAATTATTGGATCTGTGTTTGGAGGCTTCAAAGGGAAGAGCCAACTCCCCCGTTTTGCCAAAGAATGCATGCAAGGGGTGGTCAATTTAGACGAGTTCATAACACATGAGCTTCCCTTCGAGAAGATAAATGATGCGTTTAAGTTGCTCGTTGAAGGCCAGTCACTGAGATGCGTTCTGCACCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00625 ko00626 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00071 map00350 map00625 map00626 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

384

Amino Acids

41.86

Weight (kDa)

6.64

Isoelectric Point (pI)

22.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	37 - 170	1e-21	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	212 - 335	3.2e-22	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32780 AT1G64710 AT1G64710 AT1G64710
fragaria_vesca	FvH4_5g10640 FvH4_5g10640 FvH4_5g10640
malus_domestica	MD06G1121600.v1.1
prunus_persica	Prupe.5G132300_v2.0.a1
pyrus_communis	pycom06g11270
rosa_chinensis	RchiOBHm_Chr7g0187491 RchiOBHm_Chr7g0187501
rosa_laevigata	RLG00000004776 RLG00000004777
rosa_multiflora	Rmu_sc0001230.1_g000002 Rmu_sc0019127.1_g000001
rosa_roxburghii	Rroxscaffold_3G00267380 Rroxscaffold_3G00267390
rosa_rugosa	Rorug06G0482000
rosa_samantha	Rh7AG086500 Rh7AG086700 Rh7BG088100 Rh7BG088200 Rh7CG087400 Rh7CG087500 Rh7DG089000 Rh7DG089100
rosa_wichuraiana	Rw7G007630 Rw7G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	632
AccB7I	CCANNNNNTGG	2 cut(s)	733, 946
AccII	CGCG	1 cut(s)	762
AciI	CCGC	6 cut(s)	95, 98, 303, 492, 552, 760
AclWI	GGATC	4 cut(s)	118, 274, 279, 985
AcsI	RAATTY	3 cut(s)	201, 713, 909
AcuI	CTGAAG	2 cut(s)	451, 675
AfaI	GTAC	2 cut(s)	476, 895
AfiI	CCNNNNNNNGG	2 cut(s)	733, 946
AgsI	TTSAA	7 cut(s)	86, 292, 462, 561, 599, 997, 1121
AjnI	CCWGG	1 cut(s)	766
AluBI	AGCT	6 cut(s)	38, 182, 521, 668, 825, 1078
AluI	AGCT	6 cut(s)	38, 182, 521, 668, 825, 1078
AlwI	GGATC	4 cut(s)	118, 274, 279, 985
AlwNI	CAGNNNCTG	2 cut(s)	106, 1132
AoxI	GGCC	2 cut(s)	724, 1123
ApeKI	GCWGC	4 cut(s)	38, 218, 318, 575
ApoI	RAATTY	3 cut(s)	201, 713, 909
ArsI	GACNNNNNNTTYG	4 cut(s)	193, 225, 809, 841
Asp700I	GAANNNNTTC	2 cut(s)	81, 864
AspS9I	GGNCC	2 cut(s)	53, 112
AsuC2I	CCSGG	2 cut(s)	603, 857
AsuHPI	GGTGA	5 cut(s)	34, 124, 254, 388, 437
AvaII	GGWCC	2 cut(s)	53, 112
AxyI	CCTNAGG	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	632
BbvI	GCAGC	4 cut(s)	25, 230, 305, 562
BccI	CCATC	3 cut(s)	67, 879, 948
BceAI	ACGGC	1 cut(s)	632
BciT130I	CCWGG	1 cut(s)	768
BclI	TGATCA	1 cut(s)	24
BcnI	CCSGG	2 cut(s)	603, 857
BfaI	CTAG	2 cut(s)	206, 669
BfmI	CTRYAG	2 cut(s)	319, 820
BisI	GCNGC	5 cut(s)	39, 98, 219, 319, 576
BlsI	GCNGC	5 cut(s)	40, 99, 220, 320, 577
Bme1390I	CCNGG	3 cut(s)	603, 768, 857
Bme18I	GGWCC	2 cut(s)	53, 112
BmgT120I	GGNCC	2 cut(s)	53, 112
BmiI	GGNNCC	4 cut(s)	54, 63, 634, 661
BmrFI	CCNGG	3 cut(s)	603, 768, 857
BmsI	GCATC	5 cut(s)	321, 334, 686, 1090, 1127
BpmI	CTGGAG	2 cut(s)	128, 585
BpuEI	CTTGAG	2 cut(s)	506, 512
BpuMI	CCSGG	2 cut(s)	603, 857
BsaJI	CCNNGG	1 cut(s)	766
BsaWI	WCCGGW	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	2 cut(s)	733, 946
Bse1I	ACTGG	3 cut(s)	111, 568, 1126
Bse21I	CCTNAGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	738
BseBI	CCWGG	1 cut(s)	768
BseDI	CCNNGG	1 cut(s)	766
BseGI	GGATG	2 cut(s)	890, 940
BseLI	CCNNNNNNNGG	2 cut(s)	733, 946
BseMI	GCAATG	1 cut(s)	738
BseMII	CTCAG	3 cut(s)	48, 559, 1124
BseNI	ACTGG	3 cut(s)	111, 568, 1126
BseRI	GAGGAG	2 cut(s)	74, 687
BseXI	GCAGC	4 cut(s)	25, 230, 305, 562
BsgI	GTGCAG	1 cut(s)	1130
Bsh1236I	CGCG	1 cut(s)	762
BshFI	GGCC	2 cut(s)	726, 1125
BshNI	GGYRCC	1 cut(s)	632
BsiSI	CCGG	4 cut(s)	15, 222, 603, 856
BslI	CCNNNNNNNGG	2 cut(s)	733, 946
BsmI	GAATGC	1 cut(s)	1037
BsnI	GGCC	2 cut(s)	726, 1125
Bsp143I	GATC	6 cut(s)	24, 123, 151, 271, 279, 977
BspACI	CCGC	6 cut(s)	95, 98, 303, 492, 552, 760
BspANI	GGCC	2 cut(s)	726, 1125
BspCNI	CTCAG	3 cut(s)	49, 558, 1125
BspFNI	CGCG	1 cut(s)	762
BspHI	TCATGA	1 cut(s)	211
BspLI	GGNNCC	4 cut(s)	54, 63, 634, 661
BspMAI	CTGCAG	1 cut(s)	323
BspPI	GGATC	4 cut(s)	118, 274, 279, 985
BspQI	GCTCTTC	1 cut(s)	998
BspT107I	GGYRCC	1 cut(s)	632
BsrDI	GCAATG	1 cut(s)	738
BsrI	ACTGG	3 cut(s)	111, 568, 1126
BssECI	CCNNGG	1 cut(s)	766
BssMI	GATC	6 cut(s)	24, 123, 151, 271, 279, 977
Bst2UI	CCWGG	1 cut(s)	768
Bst4CI	ACNGT	5 cut(s)	386, 392, 481, 613, 898
Bst6I	CTCTTC	3 cut(s)	134, 365, 998
BstAPI	GCANNNNNTGC	1 cut(s)	318
BstC8I	GCNNGC	2 cut(s)	323, 1037
BstDEI	CTNAG	4 cut(s)	57, 155, 545, 1133
BstF5I	GGATG	2 cut(s)	890, 940
BstFNI	CGCG	1 cut(s)	762
BstKTI	GATC	6 cut(s)	27, 126, 154, 274, 282, 980
BstMBI	GATC	6 cut(s)	24, 123, 151, 271, 279, 977
BstMWI	GCNNNNNNNGC	5 cut(s)	188, 309, 318, 659, 674
BstNI	CCWGG	1 cut(s)	768
BstNSI	RCATGY	1 cut(s)	1039
BstSCI	CCNGG	3 cut(s)	601, 766, 855
BstSFI	CTRYAG	2 cut(s)	319, 820
BstUI	CGCG	1 cut(s)	762
BstV1I	GCAGC	4 cut(s)	25, 230, 305, 562
BstX2I	RGATCY	2 cut(s)	123, 977
BstYI	RGATCY	2 cut(s)	123, 977
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	726, 1125
BtsCI	GGATG	2 cut(s)	890, 940
BtsIMutI	CAGTG	3 cut(s)	147, 391, 1130
Cac8I	GCNNGC	2 cut(s)	323, 1037
CaiI	CAGNNNCTG	2 cut(s)	106, 1132
CciI	TCATGA	1 cut(s)	211
Cfr13I	GGNCC	2 cut(s)	53, 112
Csp6I	GTAC	2 cut(s)	475, 894
CviQI	GTAC	2 cut(s)	475, 894
DdeI	CTNAG	4 cut(s)	57, 155, 545, 1133
DpnI	GATC	6 cut(s)	26, 125, 153, 273, 281, 979
DpnII	GATC	6 cut(s)	24, 123, 151, 271, 279, 977
Eam1104I	CTCTTC	3 cut(s)	134, 365, 998
EarI	CTCTTC	3 cut(s)	134, 365, 998
Eco47I	GGWCC	2 cut(s)	53, 112
Eco57I	CTGAAG	2 cut(s)	451, 675
Eco81I	CCTNAGG	1 cut(s)	57
EcoO109I	RGGNCCY	1 cut(s)	53
EcoRI	GAATTC	2 cut(s)	201, 909
EcoRII	CCWGG	1 cut(s)	766
EcoT22I	ATGCAT	1 cut(s)	1037
FalI	AAGNNNNNCTT	6 cut(s)	113, 145, 524, 556, 852, 884
FauI	CCCGC	2 cut(s)	102, 767
FbaI	TGATCA	1 cut(s)	24
Fnu4HI	GCNGC	5 cut(s)	39, 98, 219, 319, 576
FokI	GGATG	2 cut(s)	897, 927
Fsp4HI	GCNGC	5 cut(s)	39, 98, 219, 319, 576
FspBI	CTAG	2 cut(s)	206, 669
GluI	GCNGC	5 cut(s)	39, 98, 219, 319, 576
GsuI	CTGGAG	2 cut(s)	128, 585
HaeIII	GGCC	2 cut(s)	726, 1125
HapII	CCGG	4 cut(s)	15, 222, 603, 856
HincII	GTYRAC	2 cut(s)	91, 697
HindII	GTYRAC	2 cut(s)	91, 697
HinfI	GANTC	5 cut(s)	117, 488, 512, 738, 789
HpaII	CCGG	4 cut(s)	15, 222, 603, 856
HphI	GGTGA	5 cut(s)	34, 124, 254, 388, 437
Hpy166II	GTNNAC	6 cut(s)	91, 361, 477, 697, 817, 894
Hpy188I	TCNGA	4 cut(s)	116, 330, 517, 847
Hpy188III	TCNNGA	7 cut(s)	56, 121, 212, 485, 505, 529, 1087
Hpy8I	GTNNAC	6 cut(s)	91, 361, 477, 697, 817, 894
HpyAV	CCTTC	6 cut(s)	239, 260, 475, 650, 1093, 1115
HpyCH4III	ACNGT	5 cut(s)	386, 392, 481, 613, 898
HpyF10VI	GCNNNNNNNGC	5 cut(s)	188, 309, 318, 659, 674
HpyF3I	CTNAG	4 cut(s)	57, 155, 545, 1133
Ksp22I	TGATCA	1 cut(s)	24
Kzo9I	GATC	6 cut(s)	24, 123, 151, 271, 279, 977
LguI	GCTCTTC	1 cut(s)	998
LmnI	GCTCC	4 cut(s)	61, 526, 659, 674
Lsp1109I	GCAGC	4 cut(s)	25, 230, 305, 562
LweI	GCATC	5 cut(s)	321, 334, 686, 1090, 1127
MaeI	CTAG	2 cut(s)	206, 669
MaeIII	GTNAC	7 cut(s)	143, 250, 305, 386, 425, 739, 1128
MalI	GATC	6 cut(s)	26, 125, 153, 273, 281, 979
MboI	GATC	6 cut(s)	24, 123, 151, 271, 279, 977
MboII	GAAGA	5 cut(s)	121, 382, 544, 1015, 1102
MflI	RGATCY	2 cut(s)	123, 977
MluCI	AATT	7 cut(s)	201, 225, 687, 713, 909, 969, 1051
MlyI	GAGTC	4 cut(s)	126, 497, 506, 747
Mph1103I	ATGCAT	1 cut(s)	1037
MroXI	GAANNNNTTC	2 cut(s)	81, 864
MseI	TTAA	2 cut(s)	453, 1107
MslI	CAYNNNNRTG	1 cut(s)	1135
MspI	CCGG	4 cut(s)	15, 222, 603, 856
MspR9I	CCNGG	3 cut(s)	603, 768, 857
Mva1269I	GAATGC	1 cut(s)	1037
MvaI	CCWGG	1 cut(s)	768
MvnI	CGCG	1 cut(s)	762
MwoI	GCNNNNNNNGC	5 cut(s)	188, 309, 318, 659, 674
NciI	CCSGG	2 cut(s)	603, 857
NdeII	GATC	6 cut(s)	24, 123, 151, 271, 279, 977
NlaIV	GGNNCC	4 cut(s)	54, 63, 634, 661
NmuCI	GTSAC	6 cut(s)	143, 250, 386, 425, 739, 1128
NsiI	ATGCAT	1 cut(s)	1037
NspI	RCATGY	1 cut(s)	1039
PaeI	GCATGC	1 cut(s)	1039
PagI	TCATGA	1 cut(s)	211
PciSI	GCTCTTC	1 cut(s)	998
PctI	GAATGC	1 cut(s)	1037
PdmI	GAANNNNTTC	2 cut(s)	81, 864
PfeI	GAWTC	1 cut(s)	789
PflMI	CCANNNNNTGG	2 cut(s)	733, 946
PfoI	TCCNGGA	1 cut(s)	855
PkrI	GCNGC	5 cut(s)	40, 99, 220, 320, 577
PleI	GAGTC	4 cut(s)	125, 496, 506, 746
PpsI	GAGTC	4 cut(s)	125, 496, 506, 746
PpuMI	RGGWCCY	1 cut(s)	53
Psp5II	RGGWCCY	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	766
PspGI	CCWGG	1 cut(s)	766
PspN4I	GGNNCC	4 cut(s)	54, 63, 634, 661
PspPI	GGNCC	2 cut(s)	53, 112
PspPPI	RGGWCCY	1 cut(s)	53
PstI	CTGCAG	1 cut(s)	323
PstNI	CAGNNNCTG	2 cut(s)	106, 1132
PsuI	RGATCY	2 cut(s)	123, 977
RsaI	GTAC	2 cut(s)	476, 895
RsaNI	GTAC	2 cut(s)	475, 894
RseI	CAYNNNNRTG	1 cut(s)	1135
SapI	GCTCTTC	1 cut(s)	998
SaqAI	TTAA	2 cut(s)	453, 1107
SatI	GCNGC	5 cut(s)	39, 98, 219, 319, 576
Sau3AI	GATC	6 cut(s)	24, 123, 151, 271, 279, 977
Sau96I	GGNCC	2 cut(s)	53, 112
SchI	GAGTC	4 cut(s)	126, 497, 506, 747
ScrFI	CCNGG	3 cut(s)	603, 768, 857
SfaNI	GCATC	5 cut(s)	321, 334, 686, 1090, 1127
SfcI	CTRYAG	2 cut(s)	319, 820
SinI	GGWCC	2 cut(s)	53, 112
SmiMI	CAYNNNNRTG	1 cut(s)	1135
SmlI	CTYRAG	2 cut(s)	485, 527
SmoI	CTYRAG	2 cut(s)	485, 527
SphI	GCATGC	1 cut(s)	1039
Sse9I	AATT	7 cut(s)	201, 225, 687, 713, 909, 969, 1051
SsiI	CCGC	6 cut(s)	95, 98, 303, 492, 552, 760
SspMI	CTAG	2 cut(s)	206, 669
StyD4I	CCNGG	3 cut(s)	601, 766, 855
TaaI	ACNGT	5 cut(s)	386, 392, 481, 613, 898
TaqI	TCGA	3 cut(s)	199, 964, 1086
TasI	AATT	7 cut(s)	201, 225, 687, 713, 909, 969, 1051
TatI	WGTACW	2 cut(s)	474, 893
TauI	GCSGC	1 cut(s)	100
TfiI	GAWTC	1 cut(s)	789
Tru1I	TTAA	2 cut(s)	453, 1107
Tru9I	TTAA	2 cut(s)	453, 1107
TscAI	CASTG	3 cut(s)	154, 391, 1137
TseFI	GTSAC	6 cut(s)	143, 250, 386, 425, 739, 1128
TseI	GCWGC	4 cut(s)	38, 218, 318, 575
Tsp45I	GTSAC	6 cut(s)	143, 250, 386, 425, 739, 1128
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	3 cut(s)	154, 391, 1137
Van91I	CCANNNNNTGG	2 cut(s)	733, 946
VpaK11BI	GGWCC	2 cut(s)	53, 112
XapI	RAATTY	3 cut(s)	201, 713, 909
XceI	RCATGY	1 cut(s)	1039
XmnI	GAANNNNTTC	2 cut(s)	81, 864
XspI	CTAG	2 cut(s)	206, 669
Zsp2I	ATGCAT	1 cut(s)	1037

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.