Rh7DG089000

Alcohol dehydrogenase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0005326
Physical Location & Seq
Forward (+)
7461648 .. 7476134
14487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG089000.1

Sequence Viewer

Length: 627 bp
ATGGAGAGGACAACCGGAAAGGTGATCACTTGCAAAGGAGTTGGTGCTGCATGGAATACTGCTGATGTTCAACCTGGCTCAACAGTCGCCATTTTTGGTTTAGGTGCCATTGGACTTGCCGTTGCTGAAGGAGCCAAAGCTAGAGGAGCATCTACAATAATTGGTGTTGACATGAACCCTAATAAATTCATCAAAGGCCAAGCAATGGGAGTCACAGATTTCATAGACACCCGCGACCCAGGAAAGCCTTTGCATGAGAGAATCAGGGAAATAACAAAAGGAGGTGTGGACTATAGCTTTGAGTGTGTAGGAAACTCCGATGTTCTCCGGGAAGCCTTTCTTTCCACACATGAGGGATGGGGGTGTACTGTGATATTGGGAATTCATGCAACACCAAAAATGCTTCCCCTCCATCCAATGGAGTTGTTTCATGGTCGAGGAATTATTGGATCTGTATTTGGAGGCTTCAAAGGGAAGAGCCAACTCCCCCGTTTTGCCAAAGAATGCATGCAAGGGGTGGTCGATTTAGACGAGTTCATAACACATGAGCTTCCCTTTGAGAAGATAAATGATGCGTTTAAGTTGCTCGTTGAAGGCCAGTCACTGAGATGCGTTCTACACCTGTGA

Protein Analysis

208

Amino Acids

22.39

Weight (kDa)

6.65

Isoelectric Point (pI)

15.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 36 - 160 1.3e-22 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 104
AccB7I CCANNNNNTGG 2 cut(s) 205, 418
AccII CGCG 1 cut(s) 234
AciI CCGC 1 cut(s) 232
AclWI GGATC 1 cut(s) 457
AcsI RAATTY 2 cut(s) 185, 381
AcuI CTGAAG 1 cut(s) 147
AfaI GTAC 1 cut(s) 367
AfiI CCNNNNNNNGG 2 cut(s) 205, 418
AgsI TTSAA 3 cut(s) 71, 469, 593
AjnI CCWGG 2 cut(s) 73, 238
AluBI AGCT 3 cut(s) 140, 297, 550
AluI AGCT 3 cut(s) 140, 297, 550
AlwI GGATC 1 cut(s) 457
AlwNI CAGNNNCTG 1 cut(s) 604
AoxI GGCC 2 cut(s) 196, 595
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 2 cut(s) 185, 381
ArsI GACNNNNNNTTYG 2 cut(s) 281, 313
Asp700I GAANNNNTTC 1 cut(s) 336
AsuC2I CCSGG 1 cut(s) 329
AsuHPI GGTGA 1 cut(s) 34
BanI GGYRCC 1 cut(s) 104
BbvI GCAGC 1 cut(s) 34
BccI CCATC 2 cut(s) 351, 420
BceAI ACGGC 1 cut(s) 104
BciT130I CCWGG 2 cut(s) 75, 240
BclI TGATCA 1 cut(s) 24
BcnI CCSGG 1 cut(s) 329
BfaI CTAG 1 cut(s) 141
BfmI CTRYAG 1 cut(s) 292
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme1390I CCNGG 3 cut(s) 75, 240, 329
BmiI GGNNCC 2 cut(s) 106, 133
BmrFI CCNGG 3 cut(s) 75, 240, 329
BmsI GCATC 3 cut(s) 158, 562, 599
BpuMI CCSGG 1 cut(s) 329
BsaJI CCNNGG 1 cut(s) 238
BsaWI WCCGGW 1 cut(s) 14
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 418
Bse1I ACTGG 1 cut(s) 598
Bse3DI GCAATG 1 cut(s) 210
BseBI CCWGG 2 cut(s) 75, 240
BseDI CCNNGG 1 cut(s) 238
BseGI GGATG 2 cut(s) 362, 412
BseLI CCNNNNNNNGG 2 cut(s) 205, 418
BseMI GCAATG 1 cut(s) 210
BseMII CTCAG 1 cut(s) 596
BseNI ACTGG 1 cut(s) 598
BseRI GAGGAG 1 cut(s) 159
BseXI GCAGC 1 cut(s) 34
Bsh1236I CGCG 1 cut(s) 234
BshFI GGCC 2 cut(s) 198, 597
BshNI GGYRCC 1 cut(s) 104
BsiSI CCGG 2 cut(s) 15, 328
BslI CCNNNNNNNGG 2 cut(s) 205, 418
BsmI GAATGC 1 cut(s) 509
BsnI GGCC 2 cut(s) 198, 597
Bsp143I GATC 2 cut(s) 24, 449
BspACI CCGC 1 cut(s) 232
BspANI GGCC 2 cut(s) 198, 597
BspCNI CTCAG 1 cut(s) 597
BspFNI CGCG 1 cut(s) 234
BspLI GGNNCC 2 cut(s) 106, 133
BspPI GGATC 1 cut(s) 457
BspQI GCTCTTC 1 cut(s) 470
BspT107I GGYRCC 1 cut(s) 104
BsrDI GCAATG 1 cut(s) 210
BsrI ACTGG 1 cut(s) 598
BssECI CCNNGG 1 cut(s) 238
BssMI GATC 2 cut(s) 24, 449
Bst2UI CCWGG 2 cut(s) 75, 240
Bst4CI ACNGT 2 cut(s) 85, 370
Bst6I CTCTTC 1 cut(s) 470
BstC8I GCNNGC 1 cut(s) 509
BstDEI CTNAG 1 cut(s) 605
BstF5I GGATG 2 cut(s) 362, 412
BstFNI CGCG 1 cut(s) 234
BstKTI GATC 2 cut(s) 27, 452
BstMBI GATC 2 cut(s) 24, 449
BstMWI GCNNNNNNNGC 2 cut(s) 131, 146
BstNI CCWGG 2 cut(s) 75, 240
BstNSI RCATGY 1 cut(s) 511
BstSCI CCNGG 3 cut(s) 73, 238, 327
BstSFI CTRYAG 1 cut(s) 292
BstUI CGCG 1 cut(s) 234
BstV1I GCAGC 1 cut(s) 34
BstX2I RGATCY 1 cut(s) 449
BstYI RGATCY 1 cut(s) 449
BsuRI GGCC 2 cut(s) 198, 597
BtsCI GGATG 2 cut(s) 362, 412
BtsIMutI CAGTG 1 cut(s) 602
Cac8I GCNNGC 1 cut(s) 509
CaiI CAGNNNCTG 1 cut(s) 604
Csp6I GTAC 1 cut(s) 366
CviAII CATG 8 cut(s) 51, 172, 254, 350, 386, 431, 508, 545
CviQI GTAC 1 cut(s) 366
DdeI CTNAG 1 cut(s) 605
DpnI GATC 2 cut(s) 26, 451
DpnII GATC 2 cut(s) 24, 449
Eam1104I CTCTTC 1 cut(s) 470
EarI CTCTTC 1 cut(s) 470
Eco57I CTGAAG 1 cut(s) 147
EcoRI GAATTC 1 cut(s) 381
EcoRII CCWGG 2 cut(s) 73, 238
EcoT22I ATGCAT 1 cut(s) 509
FaeI CATG 8 cut(s) 54, 175, 257, 353, 389, 434, 511, 548
FalI AAGNNNNNCTT 2 cut(s) 324, 356
FatI CATG 8 cut(s) 50, 171, 253, 349, 385, 430, 507, 544
FauI CCCGC 1 cut(s) 239
FbaI TGATCA 1 cut(s) 24
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 2 cut(s) 369, 399
Fsp4HI GCNGC 1 cut(s) 48
FspBI CTAG 1 cut(s) 141
GluI GCNGC 1 cut(s) 48
HaeIII GGCC 2 cut(s) 198, 597
HapII CCGG 2 cut(s) 15, 328
Hin1II CATG 8 cut(s) 54, 175, 257, 353, 389, 434, 511, 548
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 2 cut(s) 210, 261
HpaII CCGG 2 cut(s) 15, 328
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 3 cut(s) 169, 289, 366
Hpy188I TCNGA 1 cut(s) 319
Hpy8I GTNNAC 3 cut(s) 169, 289, 366
HpyAV CCTTC 2 cut(s) 122, 587
HpyCH4III ACNGT 2 cut(s) 85, 370
HpyCH4V TGCA 6 cut(s) 33, 50, 253, 389, 507, 511
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 146
HpyF3I CTNAG 1 cut(s) 605
Hsp92II CATG 8 cut(s) 54, 175, 257, 353, 389, 434, 511, 548
Ksp22I TGATCA 1 cut(s) 24
Kzo9I GATC 2 cut(s) 24, 449
LguI GCTCTTC 1 cut(s) 470
LmnI GCTCC 2 cut(s) 131, 146
LpnPI CCDG 8 cut(s) 28, 60, 87, 225, 250, 252, 341, 611
Lsp1109I GCAGC 1 cut(s) 34
LweI GCATC 3 cut(s) 158, 562, 599
MaeI CTAG 1 cut(s) 141
MaeIII GTNAC 2 cut(s) 211, 600
MalI GATC 2 cut(s) 26, 451
MboI GATC 2 cut(s) 24, 449
MboII GAAGA 2 cut(s) 487, 574
MflI RGATCY 1 cut(s) 449
MluCI AATT 4 cut(s) 159, 185, 381, 441
MlyI GAGTC 1 cut(s) 219
MnlI CCTC 6 cut(s) 137, 275, 346, 419, 431, 455
Mph1103I ATGCAT 1 cut(s) 509
MroXI GAANNNNTTC 1 cut(s) 336
MseI TTAA 1 cut(s) 579
MslI CAYNNNNRTG 1 cut(s) 607
MspI CCGG 2 cut(s) 15, 328
MspR9I CCNGG 3 cut(s) 75, 240, 329
Mva1269I GAATGC 1 cut(s) 509
MvaI CCWGG 2 cut(s) 75, 240
MvnI CGCG 1 cut(s) 234
MwoI GCNNNNNNNGC 2 cut(s) 131, 146
NciI CCSGG 1 cut(s) 329
NdeII GATC 2 cut(s) 24, 449
NlaIII CATG 8 cut(s) 54, 175, 257, 353, 389, 434, 511, 548
NlaIV GGNNCC 2 cut(s) 106, 133
NmuCI GTSAC 2 cut(s) 211, 600
NsiI ATGCAT 1 cut(s) 509
NspI RCATGY 1 cut(s) 511
PaeI GCATGC 1 cut(s) 511
PciSI GCTCTTC 1 cut(s) 470
PcsI WCGNNNNNNNCGW 1 cut(s) 528
PctI GAATGC 1 cut(s) 509
PdmI GAANNNNTTC 1 cut(s) 336
PfeI GAWTC 1 cut(s) 261
PflMI CCANNNNNTGG 2 cut(s) 205, 418
PfoI TCCNGGA 1 cut(s) 327
PkrI GCNGC 1 cut(s) 49
PleI GAGTC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 218
Psp6I CCWGG 2 cut(s) 73, 238
PspGI CCWGG 2 cut(s) 73, 238
PspN4I GGNNCC 2 cut(s) 106, 133
PstNI CAGNNNCTG 1 cut(s) 604
PsuI RGATCY 1 cut(s) 449
RsaI GTAC 1 cut(s) 367
RsaNI GTAC 1 cut(s) 366
RseI CAYNNNNRTG 1 cut(s) 607
SapI GCTCTTC 1 cut(s) 470
SaqAI TTAA 1 cut(s) 579
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 2 cut(s) 24, 449
SchI GAGTC 1 cut(s) 219
ScrFI CCNGG 3 cut(s) 75, 240, 329
SetI ASST 8 cut(s) 24, 76, 106, 142, 286, 299, 552, 624
SfaNI GCATC 3 cut(s) 158, 562, 599
SfcI CTRYAG 1 cut(s) 292
SmiMI CAYNNNNRTG 1 cut(s) 607
SphI GCATGC 1 cut(s) 511
Sse9I AATT 4 cut(s) 159, 185, 381, 441
SsiI CCGC 1 cut(s) 232
SspMI CTAG 1 cut(s) 141
StyD4I CCNGG 3 cut(s) 73, 238, 327
TaaI ACNGT 2 cut(s) 85, 370
TaqI TCGA 2 cut(s) 436, 522
TasI AATT 4 cut(s) 159, 185, 381, 441
TatI WGTACW 1 cut(s) 365
TfiI GAWTC 1 cut(s) 261
Tru1I TTAA 1 cut(s) 579
Tru9I TTAA 1 cut(s) 579
TscAI CASTG 1 cut(s) 609
TseFI GTSAC 2 cut(s) 211, 600
TseI GCWGC 1 cut(s) 47
Tsp45I GTSAC 2 cut(s) 211, 600
TspDTI ATGAA 6 cut(s) 178, 188, 211, 374, 419, 526
TspRI CASTG 1 cut(s) 609
Van91I CCANNNNNTGG 2 cut(s) 205, 418
XapI RAATTY 2 cut(s) 185, 381
XceI RCATGY 1 cut(s) 511
XmnI GAANNNNTTC 1 cut(s) 336
XspI CTAG 1 cut(s) 141
Zsp2I ATGCAT 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.