Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0015700

Physical Location & Seq

Genomic Coordinates Reverse (-)

26425757 .. 26426335

Gene Structure 579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1122600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGATTTCTCCTGTGTTGGTATTAACTTCCCCAAATGGCGCAAAAGCCTTCAAAACCTGCTAATCTTTGCACACTGCTTAAAGATCGTACTGATAGTGGCGCTTAGCCATCTGGGACTGCTCAAACCTGCAGTACAGATCTCTGAGCCAACTGCTGACTCCATGGACCACCATCCGAATCCGACCAATTCGATACTGGCGATCGATCCCCTGTGCCCGTCGATAGTCCCGGTCCCTATCCACGTTCTAACAGAATACATCAAGAGGCGGCTCCCGGTGGTGGAATTTAGTCAGGTTTTCGAAAAATACACAAAACTTGGACATCAAGATACTGCTTGCAGTATATGCTTGGAGTGCATAGAGAGGGGCCATGAGGTGAGGGAGCAGTCTAACTGCGATCATTTGTTTCACAGGGAGTGTCTGGATAGTTGGGTCAATCGGGGCCATGTGACCTGCCCCTTGTGCCGAGCTACGCTGTTTCCGGCCAAGAGCAAAACTGCGAGCTGCGGCGGAGGAAATTTAGGGACGACGGAGAGGGGTGATGCCTACTTTGATAGGTTGGAATTCATTGTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

193

Amino Acids

21.56

Weight (kDa)

7.11

Isoelectric Point (pI)

45.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	112 - 156	7e-10	Ring finger domain
zf-C3HC4	PF00097	113 - 155	7.5e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	113 - 141	6.6e-06	RING-like zinc finger
zf-rbx1	PF12678	114 - 156	1.1e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015700)

Species	Orthologous Gene IDs
malus_domestica	MD06G1122600.v1.1 MD06G1122900.v1.1 MD06G1123000.v1.1 MD06G1123400.v1.1 MD14G1139500.v1.1 MD14G1139600.v1.1 MD14G1139700.v1.1
prunus_persica	Prupe.5G134100_v2.0.a1
pyrus_communis	pycom06g11420 pycom14g11530
rosa_chinensis	RchiOBHm_Chr7g0187721
rosa_multiflora	Rmu_sc0004483.1_g000026
rosa_roxburghii	Rroxscaffold_3G00267120
rosa_samantha	Rh7BG090700 Rh7CG089700 Rh7DG091200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	66, 136, 461
AciI	CCGC	3 cut(s)	268, 507, 510
AclWI	GGATC	1 cut(s)	200
AcoI	YGGCCR	1 cut(s)	483
AcsI	RAATTY	3 cut(s)	284, 517, 563
AfaI	GTAC	2 cut(s)	90, 135
AfiI	CCNNNNNNNGG	1 cut(s)	280
AgsI	TTSAA	1 cut(s)	53
AluBI	AGCT	2 cut(s)	470, 504
AluI	AGCT	2 cut(s)	470, 504
AlwI	GGATC	1 cut(s)	200
AoxI	GGCC	3 cut(s)	367, 442, 483
ApeKI	GCWGC	1 cut(s)	504
ApoI	RAATTY	3 cut(s)	284, 517, 563
AspLEI	GCGC	2 cut(s)	42, 103
AspS9I	GGNCC	4 cut(s)	166, 232, 367, 442
AsuC2I	CCSGG	2 cut(s)	230, 275
AsuHPI	GGTGA	2 cut(s)	388, 551
AsuII	TTCGAA	1 cut(s)	300
AvaII	GGWCC	2 cut(s)	166, 232
BaeGI	GKGCMC	1 cut(s)	218
BbvI	GCAGC	1 cut(s)	491
BccI	CCATC	2 cut(s)	117, 180
BcnI	CCSGG	2 cut(s)	230, 275
BfmI	CTRYAG	1 cut(s)	129
BfoI	RGCGCY	1 cut(s)	104
BfuAI	ACCTGC	3 cut(s)	66, 136, 461
BglII	AGATCT	1 cut(s)	138
BisI	GCNGC	3 cut(s)	269, 505, 508
BlpI	GCTNAGC	1 cut(s)	104
BlsI	GCNGC	3 cut(s)	270, 506, 509
Bme1390I	CCNGG	2 cut(s)	230, 275
Bme18I	GGWCC	2 cut(s)	166, 232
BmgT120I	GGNCC	4 cut(s)	166, 232, 367, 442
BmiI	GGNNCC	4 cut(s)	234, 272, 368, 443
BmrFI	CCNGG	2 cut(s)	230, 275
BmsI	GCATC	1 cut(s)	532
Bpu1102I	GCTNAGC	1 cut(s)	104
Bpu14I	TTCGAA	1 cut(s)	300
BpuMI	CCSGG	2 cut(s)	230, 275
Bsa29I	ATCGAT	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
Bse1I	ACTGG	1 cut(s)	201
BseCI	ATCGAT	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	1 cut(s)	201
BseSI	GKGCMC	1 cut(s)	218
BseXI	GCAGC	1 cut(s)	491
Bsh1285I	CGRYCG	1 cut(s)	204
BshFI	GGCC	3 cut(s)	369, 444, 485
BshVI	ATCGAT	1 cut(s)	204
BsiEI	CGRYCG	1 cut(s)	204
BsiSI	CCGG	3 cut(s)	230, 275, 482
BslFI	GGGAC	4 cut(s)	129, 212, 218, 538
BslI	CCNNNNNNNGG	1 cut(s)	280
BsmFI	GGGAC	4 cut(s)	129, 212, 218, 538
BsnI	GGCC	3 cut(s)	369, 444, 485
Bsp119I	TTCGAA	1 cut(s)	300
Bsp1286I	GDGCHC	1 cut(s)	218
Bsp143I	GATC	5 cut(s)	84, 138, 201, 205, 397
Bsp1720I	GCTNAGC	1 cut(s)	104
Bsp19I	CCATGG	1 cut(s)	162
BspACI	CCGC	3 cut(s)	268, 507, 510
BspANI	GGCC	3 cut(s)	369, 444, 485
BspCNI	CTCAG	1 cut(s)	136
BspDI	ATCGAT	1 cut(s)	204
BspLI	GGNNCC	4 cut(s)	234, 272, 368, 443
BspMAI	CTGCAG	1 cut(s)	133
BspMI	ACCTGC	3 cut(s)	66, 136, 461
BspPI	GGATC	1 cut(s)	200
BspT104I	TTCGAA	1 cut(s)	300
BsrI	ACTGG	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	5 cut(s)	84, 138, 201, 205, 397
BssT1I	CCWWGG	1 cut(s)	162
BstAPI	GCANNNNNTGC	1 cut(s)	345
BstBI	TTCGAA	1 cut(s)	300
BstC8I	GCNNGC	2 cut(s)	337, 502
BstDEI	CTNAG	2 cut(s)	104, 144
BstDSI	CCRYGG	1 cut(s)	162
BstF5I	GGATG	1 cut(s)	172
BstH2I	RGCGCY	1 cut(s)	104
BstHHI	GCGC	2 cut(s)	42, 103
BstKTI	GATC	5 cut(s)	87, 141, 204, 208, 400
BstMBI	GATC	5 cut(s)	84, 138, 201, 205, 397
BstMCI	CGRYCG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	3 cut(s)	345, 354, 462
BstSCI	CCNGG	2 cut(s)	228, 273
BstSFI	CTRYAG	1 cut(s)	129
BstSLI	GKGCMC	1 cut(s)	218
BstV1I	GCAGC	1 cut(s)	491
BstX2I	RGATCY	1 cut(s)	138
BstYI	RGATCY	1 cut(s)	138
Bsu15I	ATCGAT	1 cut(s)	204
BsuRI	GGCC	3 cut(s)	369, 444, 485
BsuTUI	ATCGAT	1 cut(s)	204
BtgI	CCRYGG	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	172
BtsI	GCAGTG	1 cut(s)	73
BtsIMutI	CAGTG	1 cut(s)	73
BveI	ACCTGC	3 cut(s)	66, 136, 461
Cac8I	GCNNGC	2 cut(s)	337, 502
CfoI	GCGC	2 cut(s)	42, 103
Cfr13I	GGNCC	4 cut(s)	166, 232, 367, 442
ClaI	ATCGAT	1 cut(s)	204
Csp6I	GTAC	2 cut(s)	89, 134
CviAII	CATG	3 cut(s)	163, 371, 446
CviJI	RGCY	9 cut(s)	48, 108, 148, 271, 369, 444, 470, 485, 504
CviKI_1	RGCY	9 cut(s)	48, 108, 148, 271, 369, 444, 470, 485, 504
CviQI	GTAC	2 cut(s)	89, 134
DdeI	CTNAG	2 cut(s)	104, 144
DpnI	GATC	5 cut(s)	86, 140, 203, 207, 399
DpnII	GATC	5 cut(s)	84, 138, 201, 205, 397
EaeI	YGGCCR	1 cut(s)	483
EciI	GGCGGA	1 cut(s)	525
Eco130I	CCWWGG	1 cut(s)	162
Eco47I	GGWCC	2 cut(s)	166, 232
EcoRI	GAATTC	1 cut(s)	563
EcoT14I	CCWWGG	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	3 cut(s)	166, 374, 449
FaiI	YATR	6 cut(s)	164, 344, 346, 359, 372, 447
FaqI	GGGAC	4 cut(s)	129, 212, 218, 538
FatI	CATG	3 cut(s)	162, 370, 445
Fnu4HI	GCNGC	3 cut(s)	269, 505, 508
FokI	GGATG	1 cut(s)	159
Fsp4HI	GCNGC	3 cut(s)	269, 505, 508
GlaI	GCGC	2 cut(s)	41, 102
GluI	GCNGC	3 cut(s)	269, 505, 508
HaeII	RGCGCY	1 cut(s)	104
HaeIII	GGCC	3 cut(s)	369, 444, 485
HapII	CCGG	3 cut(s)	230, 275, 482
HhaI	GCGC	2 cut(s)	42, 103
Hin1II	CATG	3 cut(s)	166, 374, 449
Hin6I	GCGC	2 cut(s)	40, 101
HinP1I	GCGC	2 cut(s)	40, 101
HinfI	GANTC	2 cut(s)	158, 178
HpaII	CCGG	3 cut(s)	230, 275, 482
HphI	GGTGA	2 cut(s)	388, 551
Hpy188I	TCNGA	3 cut(s)	145, 177, 183
Hpy188III	TCNNGA	3 cut(s)	262, 326, 422
Hpy99I	CGWCG	2 cut(s)	223, 532
HpyAV	CCTTC	1 cut(s)	59
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	4 cut(s)	71, 131, 339, 357
HpyF10VI	GCNNNNNNNGC	3 cut(s)	345, 354, 462
HpyF3I	CTNAG	2 cut(s)	104, 144
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	3 cut(s)	166, 374, 449
HspAI	GCGC	2 cut(s)	40, 101
Kzo9I	GATC	5 cut(s)	84, 138, 201, 205, 397
LmnI	GCTCC	2 cut(s)	276, 382
Lsp1109I	GCAGC	1 cut(s)	491
LweI	GCATC	1 cut(s)	532
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	448
MalI	GATC	5 cut(s)	86, 140, 203, 207, 399
MboI	GATC	5 cut(s)	84, 138, 201, 205, 397
MflI	RGATCY	1 cut(s)	138
MhlI	GDGCHC	1 cut(s)	218
MluCI	AATT	4 cut(s)	187, 284, 517, 563
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	2 cut(s)	206, 540
MnlI	CCTC	6 cut(s)	258, 357, 367, 372, 506, 528
MseI	TTAA	2 cut(s)	24, 80
MspI	CCGG	3 cut(s)	230, 275, 482
MspR9I	CCNGG	2 cut(s)	230, 275
MwoI	GCNNNNNNNGC	3 cut(s)	345, 354, 462
NciI	CCSGG	2 cut(s)	230, 275
NcoI	CCATGG	1 cut(s)	162
NdeII	GATC	5 cut(s)	84, 138, 201, 205, 397
NlaIII	CATG	3 cut(s)	166, 374, 449
NlaIV	GGNNCC	4 cut(s)	234, 272, 368, 443
NmeAIII	GCCGAG	1 cut(s)	491
NmuCI	GTSAC	1 cut(s)	448
NspV	TTCGAA	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	178
PkrI	GCNGC	3 cut(s)	270, 506, 509
Ple19I	CGATCG	1 cut(s)	204
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
PspN4I	GGNNCC	4 cut(s)	234, 272, 368, 443
PspPI	GGNCC	4 cut(s)	166, 232, 367, 442
PstI	CTGCAG	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	138
PvuI	CGATCG	1 cut(s)	204
RsaI	GTAC	2 cut(s)	90, 135
RsaNI	GTAC	2 cut(s)	89, 134
SaqAI	TTAA	2 cut(s)	24, 80
SatI	GCNGC	3 cut(s)	269, 505, 508
Sau3AI	GATC	5 cut(s)	84, 138, 201, 205, 397
Sau96I	GGNCC	4 cut(s)	166, 232, 367, 442
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	2 cut(s)	230, 275
SduI	GDGCHC	1 cut(s)	218
SetI	ASST	9 cut(s)	60, 130, 246, 297, 378, 455, 472, 506, 560
SfaNI	GCATC	1 cut(s)	532
SfcI	CTRYAG	1 cut(s)	129
SfuI	TTCGAA	1 cut(s)	300
SinI	GGWCC	2 cut(s)	166, 232
Sse9I	AATT	4 cut(s)	187, 284, 517, 563
SsiI	CCGC	3 cut(s)	268, 507, 510
StyD4I	CCNGG	2 cut(s)	228, 273
StyI	CCWWGG	1 cut(s)	162
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	4 cut(s)	191, 204, 221, 300
TasI	AATT	4 cut(s)	187, 284, 517, 563
TatI	WGTACW	1 cut(s)	133
TauI	GCSGC	2 cut(s)	271, 510
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	2 cut(s)	24, 80
Tru9I	TTAA	2 cut(s)	24, 80
TscAI	CASTG	1 cut(s)	80
TseFI	GTSAC	1 cut(s)	448
TseI	GCWGC	1 cut(s)	504
Tsp45I	GTSAC	1 cut(s)	448
TspDTI	ATGAA	1 cut(s)	556
TspGWI	ACGGA	1 cut(s)	545
TspRI	CASTG	1 cut(s)	80
VpaK11BI	GGWCC	2 cut(s)	166, 232
XapI	RAATTY	3 cut(s)	284, 517, 563
XcmI	CCANNNNNNNNNTGG	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.