Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0015700

Physical Location & Seq

Genomic Coordinates Reverse (-)

12799222 .. 12800171

Gene Structure 950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G134100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGTTTTGCTCAACACAACACACCTTCCATCCCTCTTTCCTTCTGTATCTCATGGGGCTCCCTTGTGTTTGTTTAAAGATGCCGAAATGGCGCATAAGCTTCAGGACACTTCTAAACCTGCTTCAATATTTCAAGGTCATGGTGATACTGGCACTTAGCCATCTGGGTCTGCTCAAGCCTTCAGAACAGATAACTGAGTCAGCTACTGACTCGCTGGAAGAACATCATCATCCGAATCCAAACAATTACGTTCTTGTGTTGGATCGTATGTGCCCGTCGATAGTCCCCGTCCCAATTCATGTTCTAACTGCATATATCAAGAGGAGGCTTCCAGTAGTGGAGTTTGGTCAAGTTCTTGAGAGATACACAAAGCATGCAGGTGAGGACACAGTGTGCTATATATGCTTGGAGTACATAGAGGGAAGCCATGAGGTGAGGGAACAGTGCAACTGTGATCATGTGTTTCATAGGGAGTGTCTAGATAGTTGGGTTAACCAGGGCCAGCTGACCTGCCCTTTGTGCAGAGCTATGTTGTTTTCACCCAAGAGCGAAAGAACGAGCTGCGGAGGAAATCCATGGACAATGGATAGGGATGCTTACTTGGATAGGTTAGATTTCATTGTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

210

Amino Acids

24.26

Weight (kDa)

6.58

Isoelectric Point (pI)

41.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015700)

Species	Orthologous Gene IDs
malus_domestica	MD06G1122600.v1.1 MD06G1122900.v1.1 MD06G1123000.v1.1 MD06G1123400.v1.1 MD14G1139500.v1.1 MD14G1139600.v1.1 MD14G1139700.v1.1
prunus_persica	Prupe.5G134100_v2.0.a1
pyrus_communis	pycom06g11420 pycom14g11530
rosa_chinensis	RchiOBHm_Chr7g0187721
rosa_multiflora	Rmu_sc0004483.1_g000026
rosa_roxburghii	Rroxscaffold_3G00267120
rosa_samantha	Rh7BG090700 Rh7CG089700 Rh7DG091200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	368
Acc36I	ACCTGC	3 cut(s)	126, 368, 518
AciI	CCGC	1 cut(s)	564
AclWI	GGATC	1 cut(s)	270
AcuI	CTGAAG	2 cut(s)	85, 165
AdeI	CACNNNGTG	1 cut(s)	393
AfaI	GTAC	1 cut(s)	413
AgsI	TTSAA	2 cut(s)	125, 133
AjnI	CCWGG	1 cut(s)	495
AluBI	AGCT	5 cut(s)	99, 203, 505, 527, 561
AluI	AGCT	5 cut(s)	99, 203, 505, 527, 561
AlwI	GGATC	1 cut(s)	270
AlwNI	CAGNNNCTG	1 cut(s)	206
AoxI	GGCC	1 cut(s)	499
ApeKI	GCWGC	1 cut(s)	561
ArsI	GACNNNNNNTTYG	2 cut(s)	499, 531
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	1 cut(s)	499
AsuHPI	GGTGA	4 cut(s)	154, 392, 445, 531
BaeGI	GKGCMC	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	548
BccI	CCATC	2 cut(s)	36, 168
BciT130I	CCWGG	1 cut(s)	497
BclI	TGATCA	1 cut(s)	454
BfaI	CTAG	1 cut(s)	479
BfuAI	ACCTGC	3 cut(s)	126, 368, 518
BglI	GCCNNNNNGGC	1 cut(s)	88
BisI	GCNGC	1 cut(s)	562
BlsI	GCNGC	1 cut(s)	563
Bme1390I	CCNGG	1 cut(s)	497
BmgT120I	GGNCC	1 cut(s)	499
BmiI	GGNNCC	1 cut(s)	59
BmrFI	CCNGG	1 cut(s)	497
BmsI	GCATC	2 cut(s)	69, 583
BpuEI	CTTGAG	2 cut(s)	158, 377
BsaJI	CCNNGG	2 cut(s)	496, 575
Bse1I	ACTGG	2 cut(s)	153, 332
BseBI	CCWGG	1 cut(s)	497
BseDI	CCNNGG	2 cut(s)	496, 575
BseGI	GGATG	3 cut(s)	28, 229, 598
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	2 cut(s)	153, 332
BseRI	GAGGAG	1 cut(s)	337
BseSI	GKGCMC	1 cut(s)	275
BseXI	GCAGC	1 cut(s)	548
BsgI	GTGCAG	1 cut(s)	541
BshFI	GGCC	1 cut(s)	501
BslFI	GGGAC	2 cut(s)	269, 275
BsmFI	GGGAC	2 cut(s)	269, 275
BsnI	GGCC	1 cut(s)	501
Bsp1286I	GDGCHC	2 cut(s)	60, 275
Bsp143I	GATC	2 cut(s)	262, 454
Bsp19I	CCATGG	1 cut(s)	575
BspACI	CCGC	1 cut(s)	564
BspANI	GGCC	1 cut(s)	501
BspCNI	CTCAG	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	59
BspMI	ACCTGC	3 cut(s)	126, 368, 518
BspPI	GGATC	1 cut(s)	270
BsrI	ACTGG	2 cut(s)	153, 332
BssECI	CCNNGG	2 cut(s)	496, 575
BssMI	GATC	2 cut(s)	262, 454
BssT1I	CCWWGG	1 cut(s)	575
Bst2UI	CCWGG	1 cut(s)	497
Bst4CI	ACNGT	3 cut(s)	391, 444, 452
BstC8I	GCNNGC	2 cut(s)	375, 503
BstDEI	CTNAG	2 cut(s)	155, 195
BstDSI	CCRYGG	1 cut(s)	575
BstF5I	GGATG	3 cut(s)	28, 229, 598
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	2 cut(s)	265, 457
BstMBI	GATC	2 cut(s)	262, 454
BstMWI	GCNNNNNNNGC	3 cut(s)	88, 402, 519
BstNI	CCWGG	1 cut(s)	497
BstNSI	RCATGY	1 cut(s)	377
BstSCI	CCNGG	1 cut(s)	495
BstSLI	GKGCMC	1 cut(s)	275
BstV1I	GCAGC	1 cut(s)	548
BsuRI	GGCC	1 cut(s)	501
BtgI	CCRYGG	1 cut(s)	575
BtsCI	GGATG	3 cut(s)	28, 229, 598
BtsIMutI	CAGTG	2 cut(s)	396, 449
BveI	ACCTGC	3 cut(s)	126, 368, 518
Cac8I	GCNNGC	2 cut(s)	375, 503
CaiI	CAGNNNCTG	1 cut(s)	206
CfoI	GCGC	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	499
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	7 cut(s)	52, 139, 299, 374, 428, 458, 576
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	2 cut(s)	155, 195
DpnI	GATC	2 cut(s)	264, 456
DpnII	GATC	2 cut(s)	262, 454
DraI	TTTAAA	1 cut(s)	75
DraIII	CACNNNGTG	1 cut(s)	393
Eco130I	CCWWGG	1 cut(s)	575
Eco24I	GRGCYC	1 cut(s)	60
Eco57I	CTGAAG	2 cut(s)	85, 165
EcoRII	CCWGG	1 cut(s)	495
EcoT14I	CCWWGG	1 cut(s)	575
EcoT38I	GRGCYC	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	575
FaeI	CATG	7 cut(s)	55, 142, 302, 377, 431, 461, 579
FaqI	GGGAC	2 cut(s)	269, 275
FatI	CATG	7 cut(s)	51, 138, 298, 373, 427, 457, 575
FbaI	TGATCA	1 cut(s)	454
Fnu4HI	GCNGC	1 cut(s)	562
FokI	GGATG	3 cut(s)	15, 216, 605
FriOI	GRGCYC	1 cut(s)	60
Fsp4HI	GCNGC	1 cut(s)	562
FspBI	CTAG	1 cut(s)	479
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	1 cut(s)	562
HaeIII	GGCC	1 cut(s)	501
HhaI	GCGC	1 cut(s)	93
Hin1II	CATG	7 cut(s)	55, 142, 302, 377, 431, 461, 579
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HincII	GTYRAC	1 cut(s)	493
HindII	GTYRAC	1 cut(s)	493
HindIII	AAGCTT	1 cut(s)	97
HinfI	GANTC	3 cut(s)	197, 209, 235
HpaI	GTTAAC	1 cut(s)	493
HphI	GGTGA	4 cut(s)	154, 392, 445, 531
Hpy166II	GTNNAC	1 cut(s)	493
Hpy188I	TCNGA	2 cut(s)	184, 234
Hpy188III	TCNNGA	4 cut(s)	103, 319, 356, 479
Hpy8I	GTNNAC	1 cut(s)	493
Hpy99I	CGWCG	1 cut(s)	280
HpyAV	CCTTC	3 cut(s)	34, 50, 189
HpyCH4III	ACNGT	3 cut(s)	391, 444, 452
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	4 cut(s)	311, 377, 447, 522
HpyF10VI	GCNNNNNNNGC	3 cut(s)	88, 402, 519
HpyF3I	CTNAG	2 cut(s)	155, 195
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	7 cut(s)	55, 142, 302, 377, 431, 461, 579
HspAI	GCGC	1 cut(s)	91
Ksp22I	TGATCA	1 cut(s)	454
KspAI	GTTAAC	1 cut(s)	493
Kzo9I	GATC	2 cut(s)	262, 454
LmnI	GCTCC	1 cut(s)	63
Lsp1109I	GCAGC	1 cut(s)	548
LweI	GCATC	2 cut(s)	69, 583
MaeI	CTAG	1 cut(s)	479
MaeII	ACGT	1 cut(s)	249
MalI	GATC	2 cut(s)	264, 456
MboI	GATC	2 cut(s)	262, 454
MboII	GAAGA	1 cut(s)	230
MhlI	GDGCHC	2 cut(s)	60, 275
MluCI	AATT	2 cut(s)	244, 294
MlyI	GAGTC	2 cut(s)	203, 206
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	8 cut(s)	43, 315, 318, 376, 412, 424, 429, 560
MseI	TTAA	2 cut(s)	74, 492
MslI	CAYNNNNRTG	1 cut(s)	378
MspA1I	CMGCKG	1 cut(s)	505
MspR9I	CCNGG	1 cut(s)	497
MvaI	CCWGG	1 cut(s)	497
MwoI	GCNNNNNNNGC	3 cut(s)	88, 402, 519
NcoI	CCATGG	1 cut(s)	575
NdeII	GATC	2 cut(s)	262, 454
NlaIII	CATG	7 cut(s)	55, 142, 302, 377, 431, 461, 579
NlaIV	GGNNCC	1 cut(s)	59
NspI	RCATGY	1 cut(s)	377
PaeI	GCATGC	1 cut(s)	377
PaqCI	CACCTGC	1 cut(s)	368
PfeI	GAWTC	1 cut(s)	235
PkrI	GCNGC	1 cut(s)	563
PleI	GAGTC	2 cut(s)	203, 205
PpsI	GAGTC	2 cut(s)	203, 205
Psp6I	CCWGG	1 cut(s)	495
PspGI	CCWGG	1 cut(s)	495
PspN4I	GGNNCC	1 cut(s)	59
PspPI	GGNCC	1 cut(s)	499
PstNI	CAGNNNCTG	1 cut(s)	206
PvuII	CAGCTG	1 cut(s)	505
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
RseI	CAYNNNNRTG	1 cut(s)	378
SaqAI	TTAA	2 cut(s)	74, 492
SatI	GCNGC	1 cut(s)	562
Sau3AI	GATC	2 cut(s)	262, 454
Sau96I	GGNCC	1 cut(s)	499
SchI	GAGTC	2 cut(s)	203, 206
ScrFI	CCNGG	1 cut(s)	497
SduI	GDGCHC	2 cut(s)	60, 275
SfaNI	GCATC	2 cut(s)	69, 583
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	2 cut(s)	173, 356
SmoI	CTYRAG	2 cut(s)	173, 356
SphI	GCATGC	1 cut(s)	377
Sse9I	AATT	2 cut(s)	244, 294
SsiI	CCGC	1 cut(s)	564
SspI	AATATT	1 cut(s)	128
SspMI	CTAG	1 cut(s)	479
StyD4I	CCNGG	1 cut(s)	495
StyI	CCWWGG	1 cut(s)	575
TaaI	ACNGT	3 cut(s)	391, 444, 452
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	1 cut(s)	278
TasI	AATT	2 cut(s)	244, 294
TatI	WGTACW	1 cut(s)	411
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	2 cut(s)	74, 492
Tru9I	TTAA	2 cut(s)	74, 492
TscAI	CASTG	2 cut(s)	396, 449
TseI	GCWGC	1 cut(s)	561
TspDTI	ATGAA	3 cut(s)	287, 455, 607
TspRI	CASTG	2 cut(s)	396, 449
XbaI	TCTAGA	1 cut(s)	478
XceI	RCATGY	1 cut(s)	377
XspI	CTAG	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.