Rmu_sc0004483.1_g000026

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004483.1
OG0015700
Physical Location & Seq
Reverse (-)
91262 .. 91594
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004483.1_g000026.1.cds

Sequence Viewer

Length: 333 bp
atgcggaaatgcataagcattgagatgctgctaaacctggtagccttcttcaagctcatagttctaatggcactcaaccatctgggtctcttcaaaccttcagaacacgtgactgactccacagaagaacaacaacattataccaattatgttgttgtgctcaatcatctgtgtccatcaataatcccagttcatgttctgacagcacacatcaagaagcttccagtagtggagttcggccaagcgcttgaaaaatacaaagatgagggcaaggctatagtatgcaacatttgcttggactgcatagaacgcagtcatgaggtgacagaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

110

Amino Acids

12.54

Weight (kDa)

6.14

Isoelectric Point (pI)

46.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 4
AcoI YGGCCR 1 cut(s) 238
AcuI CTGAAG 1 cut(s) 84
AcvI CACGTG 1 cut(s) 109
AfeI AGCGCT 1 cut(s) 246
AflIII ACRYGT 1 cut(s) 106
AgsI TTSAA 3 cut(s) 52, 94, 251
AjnI CCWGG 1 cut(s) 36
AluBI AGCT 2 cut(s) 55, 220
AluI AGCT 2 cut(s) 55, 220
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 1 cut(s) 92
Aor51HI AGCGCT 1 cut(s) 246
AoxI GGCC 1 cut(s) 238
ApeKI GCWGC 1 cut(s) 28
AspLEI GCGC 1 cut(s) 247
BbrPI CACGTG 1 cut(s) 109
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 15
BccI CCATC 2 cut(s) 87, 184
BciT130I CCWGG 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 92
BfmI CTRYAG 1 cut(s) 276
BfoI RGCGCY 1 cut(s) 248
BisI GCNGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 30
Bme1390I CCNGG 1 cut(s) 38
BmrFI CCNGG 1 cut(s) 38
BmrI ACTGGG 1 cut(s) 182
BmsI GCATC 1 cut(s) 15
BmuI ACTGGG 1 cut(s) 182
BsaAI YACGTR 1 cut(s) 109
BsaI GGTCTC 1 cut(s) 92
Bse1I ACTGG 2 cut(s) 188, 224
BseBI CCWGG 1 cut(s) 38
BseNI ACTGG 2 cut(s) 188, 224
BseXI GCAGC 1 cut(s) 15
BshFI GGCC 1 cut(s) 240
BsiHKAI GWGCWC 1 cut(s) 162
BsmAI GTCTC 1 cut(s) 92
BsnI GGCC 1 cut(s) 240
Bso31I GGTCTC 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 162
BspACI CCGC 1 cut(s) 4
BspANI GGCC 1 cut(s) 240
BspHI TCATGA 1 cut(s) 316
BspTNI GGTCTC 1 cut(s) 92
BsrI ACTGG 2 cut(s) 188, 224
Bst2UI CCWGG 1 cut(s) 38
Bst6I CTCTTC 1 cut(s) 95
BstAPI GCANNNNNTGC 1 cut(s) 291
BstBAI YACGTR 1 cut(s) 109
BstH2I RGCGCY 1 cut(s) 248
BstHHI GCGC 1 cut(s) 247
BstMAI GTCTC 1 cut(s) 92
BstMWI GCNNNNNNNGC 3 cut(s) 291, 300, 309
BstNI CCWGG 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 36
BstSFI CTRYAG 1 cut(s) 276
BstV1I GCAGC 1 cut(s) 15
BsuRI GGCC 1 cut(s) 240
CciI TCATGA 1 cut(s) 316
CfoI GCGC 1 cut(s) 247
CsiI ACCWGGT 1 cut(s) 36
CviAII CATG 2 cut(s) 194, 317
CviJI RGCY 5 cut(s) 44, 55, 220, 240, 275
CviKI_1 RGCY 5 cut(s) 44, 55, 220, 240, 275
EaeI YGGCCR 1 cut(s) 238
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
Eco31I GGTCTC 1 cut(s) 92
Eco47III AGCGCT 1 cut(s) 246
Eco57I CTGAAG 1 cut(s) 84
Eco72I CACGTG 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 36
EcoT22I ATGCAT 1 cut(s) 14
FaeI CATG 2 cut(s) 197, 320
FaiI YATR 9 cut(s) 14, 59, 141, 150, 195, 278, 283, 305, 318
FatI CATG 2 cut(s) 193, 316
Fnu4HI GCNGC 1 cut(s) 29
Fsp4HI GCNGC 1 cut(s) 29
GlaI GCGC 1 cut(s) 246
GluI GCNGC 1 cut(s) 29
HaeII RGCGCY 1 cut(s) 248
HaeIII GGCC 1 cut(s) 240
HhaI GCGC 1 cut(s) 247
Hin1II CATG 2 cut(s) 197, 320
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 1 cut(s) 116
Hpy188I TCNGA 2 cut(s) 103, 201
Hpy188III TCNNGA 2 cut(s) 214, 317
HpyAV CCTTC 2 cut(s) 55, 108
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 3 cut(s) 12, 285, 303
HpyF10VI GCNNNNNNNGC 3 cut(s) 291, 300, 309
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 2 cut(s) 197, 320
HspAI GCGC 1 cut(s) 245
LpnPI CCDG 5 cut(s) 23, 50, 68, 201, 237
Lsp1109I GCAGC 1 cut(s) 15
LweI GCATC 1 cut(s) 15
MabI ACCWGGT 1 cut(s) 36
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 2 cut(s) 109, 322
MboII GAAGA 3 cut(s) 40, 82, 137
MhlI GDGCHC 1 cut(s) 162
MluCI AATT 1 cut(s) 145
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 2 cut(s) 259, 313
Mph1103I ATGCAT 1 cut(s) 14
MslI CAYNNNNRTG 1 cut(s) 23
MspR9I CCNGG 1 cut(s) 38
MvaI CCWGG 1 cut(s) 38
MwoI GCNNNNNNNGC 3 cut(s) 291, 300, 309
NlaIII CATG 2 cut(s) 197, 320
NmuCI GTSAC 2 cut(s) 109, 322
NsiI ATGCAT 1 cut(s) 14
PagI TCATGA 1 cut(s) 316
PkrI GCNGC 1 cut(s) 30
PleI GAGTC 1 cut(s) 110
PmaCI CACGTG 1 cut(s) 109
PmlI CACGTG 1 cut(s) 109
PpsI GAGTC 1 cut(s) 110
Ppu21I YACGTR 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 36
PspCI CACGTG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 36
RseI CAYNNNNRTG 1 cut(s) 23
SatI GCNGC 1 cut(s) 29
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 38
SduI GDGCHC 1 cut(s) 162
SetI ASST 6 cut(s) 39, 57, 100, 111, 222, 324
SexAI ACCWGGT 1 cut(s) 36
SfaNI GCATC 1 cut(s) 15
SfcI CTRYAG 1 cut(s) 276
SmiMI CAYNNNNRTG 1 cut(s) 23
Sse9I AATT 1 cut(s) 145
SsiI CCGC 1 cut(s) 4
StyD4I CCNGG 1 cut(s) 36
TaiI ACGT 1 cut(s) 111
TasI AATT 1 cut(s) 145
TseFI GTSAC 2 cut(s) 109, 322
TseI GCWGC 1 cut(s) 28
Tsp45I GTSAC 2 cut(s) 109, 322
TspDTI ATGAA 1 cut(s) 182
Zsp2I ATGCAT 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.