Rroxscaffold_3G00267120

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0015700
Physical Location & Seq
Forward (+)
60233362 .. 60233652
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00267120.1

Sequence Viewer

Length: 291 bp
ATGACGAAATGCCTAAGCATTGAGATGCTGCTAAACCTGGTAGCCTTCTTCAAGCTCATAGTTCTAATGGCACTTAACCATCTGGGTCTCTTCAAACCGTCAGAACACGTGACTGACTCCACAGAAGAACAACAACATTATACCAATTATGTTGTTGTGCTCGATCATCTGTGTCCATCAATAATCCCAGTTCATGTTCTAACAGCACACATCAAGAAGCTTCCAGTAGTGGAGTTCGGTCAAGGCTATAGTATGCGACATTTGCTTGGACTGCATATAAAGCAGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

96

Amino Acids

10.92

Weight (kDa)

7.09

Isoelectric Point (pI)

50.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcvI CACGTG 1 cut(s) 109
AflIII ACRYGT 1 cut(s) 106
AgsI TTSAA 2 cut(s) 52, 94
AjnI CCWGG 1 cut(s) 36
AluBI AGCT 2 cut(s) 55, 220
AluI AGCT 2 cut(s) 55, 220
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 1 cut(s) 92
ApeKI GCWGC 1 cut(s) 28
BbrPI CACGTG 1 cut(s) 109
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 15
BccI CCATC 2 cut(s) 87, 184
BciT130I CCWGG 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 92
BfmI CTRYAG 1 cut(s) 247
BisI GCNGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 30
Bme1390I CCNGG 1 cut(s) 38
BmrFI CCNGG 1 cut(s) 38
BmrI ACTGGG 1 cut(s) 182
BmsI GCATC 1 cut(s) 15
BmuI ACTGGG 1 cut(s) 182
Bpu10I CCTNAGC 1 cut(s) 14
BsaAI YACGTR 1 cut(s) 109
BsaI GGTCTC 1 cut(s) 92
Bse1I ACTGG 2 cut(s) 188, 224
BseBI CCWGG 1 cut(s) 38
BseNI ACTGG 2 cut(s) 188, 224
BseXI GCAGC 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 162
BsmAI GTCTC 1 cut(s) 92
Bso31I GGTCTC 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 162
Bsp143I GATC 1 cut(s) 163
BspHI TCATGA 1 cut(s) 287
BspTNI GGTCTC 1 cut(s) 92
BsrI ACTGG 2 cut(s) 188, 224
BssMI GATC 1 cut(s) 163
Bst2UI CCWGG 1 cut(s) 38
Bst4CI ACNGT 1 cut(s) 99
Bst6I CTCTTC 1 cut(s) 95
BstBAI YACGTR 1 cut(s) 109
BstDEI CTNAG 1 cut(s) 14
BstKTI GATC 1 cut(s) 166
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 1 cut(s) 163
BstMWI GCNNNNNNNGC 3 cut(s) 262, 271, 280
BstNI CCWGG 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 36
BstSFI CTRYAG 1 cut(s) 247
BstV1I GCAGC 1 cut(s) 15
CciI TCATGA 1 cut(s) 287
CsiI ACCWGGT 1 cut(s) 36
CviAII CATG 2 cut(s) 194, 288
CviJI RGCY 4 cut(s) 44, 55, 220, 246
CviKI_1 RGCY 4 cut(s) 44, 55, 220, 246
DdeI CTNAG 1 cut(s) 14
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
Eco31I GGTCTC 1 cut(s) 92
Eco72I CACGTG 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 36
FaeI CATG 2 cut(s) 197, 291
FaiI YATR 9 cut(s) 59, 141, 150, 195, 249, 254, 276, 278, 289
FatI CATG 2 cut(s) 193, 287
Fnu4HI GCNGC 1 cut(s) 29
Fsp4HI GCNGC 1 cut(s) 29
GluI GCNGC 1 cut(s) 29
Hin1II CATG 2 cut(s) 197, 291
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 1 cut(s) 116
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 2 cut(s) 214, 288
HpyAV CCTTC 1 cut(s) 55
HpyCH4III ACNGT 1 cut(s) 99
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 1 cut(s) 274
HpyF10VI GCNNNNNNNGC 3 cut(s) 262, 271, 280
HpyF3I CTNAG 1 cut(s) 14
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 2 cut(s) 197, 291
Kzo9I GATC 1 cut(s) 163
LpnPI CCDG 5 cut(s) 23, 50, 68, 201, 237
Lsp1109I GCAGC 1 cut(s) 15
LweI GCATC 1 cut(s) 15
MabI ACCWGGT 1 cut(s) 36
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 1 cut(s) 109
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 3 cut(s) 40, 82, 137
MhlI GDGCHC 1 cut(s) 162
MluCI AATT 1 cut(s) 145
MlyI GAGTC 1 cut(s) 110
MseI TTAA 1 cut(s) 75
MslI CAYNNNNRTG 1 cut(s) 23
MspR9I CCNGG 1 cut(s) 38
MvaI CCWGG 1 cut(s) 38
MwoI GCNNNNNNNGC 3 cut(s) 262, 271, 280
NdeII GATC 1 cut(s) 163
NlaIII CATG 2 cut(s) 197, 291
NmuCI GTSAC 1 cut(s) 109
PagI TCATGA 1 cut(s) 287
PkrI GCNGC 1 cut(s) 30
PleI GAGTC 1 cut(s) 110
PmaCI CACGTG 1 cut(s) 109
PmlI CACGTG 1 cut(s) 109
PpsI GAGTC 1 cut(s) 110
Ppu21I YACGTR 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 36
PspCI CACGTG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 36
RseI CAYNNNNRTG 1 cut(s) 23
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 1 cut(s) 29
Sau3AI GATC 1 cut(s) 163
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 38
SduI GDGCHC 1 cut(s) 162
SetI ASST 4 cut(s) 39, 57, 111, 222
SexAI ACCWGGT 1 cut(s) 36
SfaNI GCATC 1 cut(s) 15
SfcI CTRYAG 1 cut(s) 247
SmiMI CAYNNNNRTG 1 cut(s) 23
Sse9I AATT 1 cut(s) 145
StyD4I CCNGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 99
TaiI ACGT 1 cut(s) 111
TaqI TCGA 1 cut(s) 162
TaqII GACCGA 1 cut(s) 227
TasI AATT 1 cut(s) 145
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 1 cut(s) 28
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.