Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0015700

Physical Location & Seq

Genomic Coordinates Reverse (-)

26462265 .. 26462819

Gene Structure 555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1123000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGCGTTTTGGGTTGGTATTAAAGTGCCGAAATGGTTTACGACACTGCTCGTCCTCGCCCACTGCTTCAAGATCCTGTTGATAGTTGCACTTTCCCATCTAGGTCTGCTCAAACCTTCCCAAGAGATGACTGAGTTAGAAGAATATCGTCGTCGACAAACTAACAATCATTTTGTTGTGCTGGATCGTCTGTGTCCATCGGCAGTTCCCGTGCCGATCCATGTTCTAACAGAATACATCAAGAGGAAGCTTCCGGTAGTGGAGTTTGGTCAAGTTTTCGACAAATACACAAGGCTTGAAAGTCGGGACACAGAATGCAATATATGCTTGGAGTGCATAGAGCGGAGCCATGATGTGAGGGAACCGTGCAATTGTGATCATGTGTTTCACAGGCAGTGTCTGGATAGTTGGGTCGATCAGGGCCAGGTAACCTGCCCTTTGTGCAGATCTCCATTGTTTCCGGCTAAGAGCGAAACAATGAGCTGCGGCAAAGGAAGTTCAGGAACGATAGAAAGGGATGGTGAGCACGGTTCGGTTTGGTGGAGCTTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

185

Amino Acids

21.22

Weight (kDa)

6.44

Isoelectric Point (pI)

58.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	105 - 149	8.8e-09	Ring finger domain
zf-C3HC4	PF00097	106 - 148	2.7e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	107 - 149	1.1e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015700)

Species	Orthologous Gene IDs
malus_domestica	MD06G1122600.v1.1 MD06G1122900.v1.1 MD06G1123000.v1.1 MD06G1123400.v1.1 MD14G1139500.v1.1 MD14G1139600.v1.1 MD14G1139700.v1.1
prunus_persica	Prupe.5G134100_v2.0.a1
pyrus_communis	pycom06g11420 pycom14g11530
rosa_chinensis	RchiOBHm_Chr7g0187721
rosa_multiflora	Rmu_sc0004483.1_g000026
rosa_roxburghii	Rroxscaffold_3G00267120
rosa_samantha	Rh7BG090700 Rh7CG089700 Rh7DG091200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	440
AccBSI	CCGCTC	1 cut(s)	343
AccI	GTMKAC	1 cut(s)	154
AciI	CCGC	2 cut(s)	343, 486
AclWI	GGATC	3 cut(s)	67, 192, 211
AgsI	TTSAA	2 cut(s)	70, 299
AjnI	CCWGG	1 cut(s)	423
AluBI	AGCT	3 cut(s)	250, 483, 546
AluI	AGCT	3 cut(s)	250, 483, 546
Alw21I	GWGCWC	1 cut(s)	528
AlwI	GGATC	3 cut(s)	67, 192, 211
AlwNI	CAGNNNCTG	1 cut(s)	400
AoxI	GGCC	1 cut(s)	421
ApeKI	GCWGC	1 cut(s)	483
AspS9I	GGNCC	1 cut(s)	421
AsuHPI	GGTGA	1 cut(s)	533
Bbv12I	GWGCWC	1 cut(s)	528
BbvI	GCAGC	1 cut(s)	470
BccI	CCATC	3 cut(s)	105, 205, 512
BciT130I	CCWGG	1 cut(s)	425
BclI	TGATCA	1 cut(s)	376
BfaI	CTAG	1 cut(s)	101
BfuAI	ACCTGC	1 cut(s)	440
BglII	AGATCT	1 cut(s)	446
BisI	GCNGC	2 cut(s)	484, 487
BlsI	GCNGC	2 cut(s)	485, 488
Bme1390I	CCNGG	1 cut(s)	425
BmgT120I	GGNCC	1 cut(s)	421
BmiI	GGNNCC	2 cut(s)	347, 363
BmrFI	CCNGG	1 cut(s)	425
BsaWI	WCCGGW	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	425
BseGI	GGATG	1 cut(s)	523
BseMII	CTCAG	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	470
BsgI	GTGCAG	1 cut(s)	463
BshFI	GGCC	1 cut(s)	423
BsiHKAI	GWGCWC	1 cut(s)	528
BsiSI	CCGG	2 cut(s)	254, 461
BslFI	GGGAC	1 cut(s)	320
BsmFI	GGGAC	1 cut(s)	320
BsmI	GAATGC	1 cut(s)	320
BsnI	GGCC	1 cut(s)	423
Bsp1286I	GDGCHC	1 cut(s)	528
Bsp143I	GATC	6 cut(s)	72, 184, 216, 376, 415, 446
BspACI	CCGC	2 cut(s)	343, 486
BspANI	GGCC	1 cut(s)	423
BspCNI	CTCAG	1 cut(s)	124
BspLI	GGNNCC	2 cut(s)	347, 363
BspMI	ACCTGC	1 cut(s)	440
BspPI	GGATC	3 cut(s)	67, 192, 211
BsrBI	CCGCTC	1 cut(s)	343
BssMI	GATC	6 cut(s)	72, 184, 216, 376, 415, 446
Bst2UI	CCWGG	1 cut(s)	425
Bst4CI	ACNGT	2 cut(s)	366, 530
BstAPI	GCANNNNNTGC	1 cut(s)	324
BstDEI	CTNAG	2 cut(s)	132, 465
BstEII	GGTNACC	1 cut(s)	427
BstF5I	GGATG	1 cut(s)	523
BstKTI	GATC	6 cut(s)	75, 187, 219, 379, 418, 449
BstMBI	GATC	6 cut(s)	72, 184, 216, 376, 415, 446
BstMWI	GCNNNNNNNGC	3 cut(s)	324, 333, 441
BstNI	CCWGG	1 cut(s)	425
BstPI	GGTNACC	1 cut(s)	427
BstSCI	CCNGG	1 cut(s)	423
BstV1I	GCAGC	1 cut(s)	470
BstX2I	RGATCY	2 cut(s)	72, 446
BstYI	RGATCY	2 cut(s)	72, 446
BsuRI	GGCC	1 cut(s)	423
BtsCI	GGATG	1 cut(s)	523
BtsI	GCAGTG	3 cut(s)	44, 61, 401
BtsIMutI	CAGTG	3 cut(s)	44, 61, 401
BveI	ACCTGC	1 cut(s)	440
CaiI	CAGNNNCTG	1 cut(s)	400
Cfr13I	GGNCC	1 cut(s)	421
CviAII	CATG	3 cut(s)	221, 350, 380
CviJI	RGCY	7 cut(s)	250, 295, 348, 423, 464, 483, 546
CviKI_1	RGCY	7 cut(s)	250, 295, 348, 423, 464, 483, 546
DdeI	CTNAG	2 cut(s)	132, 465
DpnI	GATC	6 cut(s)	74, 186, 218, 378, 417, 448
DpnII	GATC	6 cut(s)	72, 184, 216, 376, 415, 446
Eco91I	GGTNACC	1 cut(s)	427
EcoO65I	GGTNACC	1 cut(s)	427
EcoRII	CCWGG	1 cut(s)	423
FaeI	CATG	3 cut(s)	224, 353, 383
FaiI	YATR	6 cut(s)	222, 323, 325, 338, 351, 381
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	3 cut(s)	220, 349, 379
FbaI	TGATCA	1 cut(s)	376
FblI	GTMKAC	1 cut(s)	154
Fnu4HI	GCNGC	2 cut(s)	484, 487
FokI	GGATG	1 cut(s)	530
Fsp4HI	GCNGC	2 cut(s)	484, 487
FspBI	CTAG	1 cut(s)	101
GluI	GCNGC	2 cut(s)	484, 487
HaeIII	GGCC	1 cut(s)	423
HapII	CCGG	2 cut(s)	254, 461
Hin1II	CATG	3 cut(s)	224, 353, 383
HincII	GTYRAC	1 cut(s)	155
HindII	GTYRAC	1 cut(s)	155
HindIII	AAGCTT	1 cut(s)	248
HpaII	CCGG	2 cut(s)	254, 461
HphI	GGTGA	1 cut(s)	533
Hpy166II	GTNNAC	2 cut(s)	39, 155
Hpy188III	TCNNGA	5 cut(s)	70, 241, 305, 401, 501
Hpy8I	GTNNAC	2 cut(s)	39, 155
Hpy99I	CGWCG	2 cut(s)	153, 156
HpyAV	CCTTC	1 cut(s)	126
HpyCH4III	ACNGT	2 cut(s)	366, 530
HpyCH4V	TGCA	5 cut(s)	89, 318, 336, 369, 444
HpyF10VI	GCNNNNNNNGC	3 cut(s)	324, 333, 441
HpyF3I	CTNAG	2 cut(s)	132, 465
Hsp92II	CATG	3 cut(s)	224, 353, 383
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	6 cut(s)	72, 184, 216, 376, 415, 446
LmnI	GCTCC	2 cut(s)	345, 543
Lsp1109I	GCAGC	1 cut(s)	470
MaeI	CTAG	1 cut(s)	101
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	6 cut(s)	74, 186, 218, 378, 417, 448
MbiI	CCGCTC	1 cut(s)	343
MboI	GATC	6 cut(s)	72, 184, 216, 376, 415, 446
MboII	GAAGA	1 cut(s)	152
MfeI	CAATTG	1 cut(s)	370
MflI	RGATCY	2 cut(s)	72, 446
MhlI	GDGCHC	1 cut(s)	528
MluCI	AATT	1 cut(s)	370
MnlI	CCTC	3 cut(s)	65, 237, 351
MseI	TTAA	1 cut(s)	21
MspI	CCGG	2 cut(s)	254, 461
MspR9I	CCNGG	1 cut(s)	425
MunI	CAATTG	1 cut(s)	370
Mva1269I	GAATGC	1 cut(s)	320
MvaI	CCWGG	1 cut(s)	425
MwoI	GCNNNNNNNGC	3 cut(s)	324, 333, 441
NdeII	GATC	6 cut(s)	72, 184, 216, 376, 415, 446
NlaIII	CATG	3 cut(s)	224, 353, 383
NlaIV	GGNNCC	2 cut(s)	347, 363
PctI	GAATGC	1 cut(s)	320
PkrI	GCNGC	2 cut(s)	485, 488
Psp6I	CCWGG	1 cut(s)	423
PspEI	GGTNACC	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	423
PspN4I	GGNNCC	2 cut(s)	347, 363
PspPI	GGNCC	1 cut(s)	421
PstNI	CAGNNNCTG	1 cut(s)	400
PsuI	RGATCY	2 cut(s)	72, 446
SalI	GTCGAC	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	2 cut(s)	484, 487
Sau3AI	GATC	6 cut(s)	72, 184, 216, 376, 415, 446
Sau96I	GGNCC	1 cut(s)	421
ScrFI	CCNGG	1 cut(s)	425
SduI	GDGCHC	1 cut(s)	528
SetI	ASST	7 cut(s)	106, 118, 252, 429, 434, 485, 548
Sse9I	AATT	1 cut(s)	370
SsiI	CCGC	2 cut(s)	343, 486
SspMI	CTAG	1 cut(s)	101
StyD4I	CCNGG	1 cut(s)	423
TaaI	ACNGT	2 cut(s)	366, 530
TaqI	TCGA	3 cut(s)	154, 279, 414
TasI	AATT	1 cut(s)	370
TauI	GCSGC	1 cut(s)	489
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TscAI	CASTG	3 cut(s)	51, 68, 401
TseI	GCWGC	1 cut(s)	483
TspRI	CASTG	3 cut(s)	51, 68, 401
XmiI	GTMKAC	1 cut(s)	154
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.