RchiOBHm_Chr7g0187721

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0015700
Physical Location & Seq
Reverse (-)
7506411 .. 7506749
339 bp
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UTR
Exon/CDS
Intron
PRQ16759

Sequence Viewer

Length: 339 bp
ATGAAGATGCGGAAATGCATAAGCATTGAGATGCTGCTAAACCTGGTAGCCTTCTTCAAGCTCATAGTTCTAATGGCACTCAACCATCTGGGTCTCTTCAAACCTTCAGAACACGTGACTGACTCCACAGAAGAACAACAACATTATACCAATTATGTTGTTGTGCTCAATCATCTGTGTCCATCAATAATCCCAGTTCATGTTCTAACAGCACACATCAAGAAGCTTCCAGTAGAGGAGTTCGGTCAAGCGCTTGAAAAATACAAAGATGAGGGCAAGGCTATAGTATGCAACATTTGCTTGGACTGCATAGAACGCAGTCATGAGGTGACAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

112

Amino Acids

12.83

Weight (kDa)

6.14

Isoelectric Point (pI)

51.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 10
AcuI CTGAAG 1 cut(s) 90
AcvI CACGTG 1 cut(s) 115
AfeI AGCGCT 1 cut(s) 252
AflIII ACRYGT 1 cut(s) 112
AgsI TTSAA 3 cut(s) 58, 100, 257
AjnI CCWGG 1 cut(s) 42
AluBI AGCT 2 cut(s) 61, 226
AluI AGCT 2 cut(s) 61, 226
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 98
Aor51HI AGCGCT 1 cut(s) 252
ApeKI GCWGC 1 cut(s) 34
AspLEI GCGC 1 cut(s) 253
BbrPI CACGTG 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 1 cut(s) 21
BccI CCATC 2 cut(s) 93, 190
BciT130I CCWGG 1 cut(s) 44
BcoDI GTCTC 1 cut(s) 98
BfmI CTRYAG 1 cut(s) 282
BfoI RGCGCY 1 cut(s) 254
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
Bme1390I CCNGG 1 cut(s) 44
BmrFI CCNGG 1 cut(s) 44
BmrI ACTGGG 1 cut(s) 188
BmsI GCATC 1 cut(s) 21
BmuI ACTGGG 1 cut(s) 188
BsaAI YACGTR 1 cut(s) 115
BsaI GGTCTC 1 cut(s) 98
Bse1I ACTGG 2 cut(s) 194, 230
BseBI CCWGG 1 cut(s) 44
BseNI ACTGG 2 cut(s) 194, 230
BseRI GAGGAG 1 cut(s) 251
BseXI GCAGC 1 cut(s) 21
BsiHKAI GWGCWC 1 cut(s) 168
BsmAI GTCTC 1 cut(s) 98
Bso31I GGTCTC 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 168
BspACI CCGC 1 cut(s) 10
BspHI TCATGA 1 cut(s) 322
BspTNI GGTCTC 1 cut(s) 98
BsrI ACTGG 2 cut(s) 194, 230
Bst2UI CCWGG 1 cut(s) 44
Bst6I CTCTTC 1 cut(s) 101
BstAPI GCANNNNNTGC 1 cut(s) 297
BstBAI YACGTR 1 cut(s) 115
BstH2I RGCGCY 1 cut(s) 254
BstHHI GCGC 1 cut(s) 253
BstMAI GTCTC 1 cut(s) 98
BstMWI GCNNNNNNNGC 3 cut(s) 297, 306, 315
BstNI CCWGG 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 42
BstSFI CTRYAG 1 cut(s) 282
BstV1I GCAGC 1 cut(s) 21
CciI TCATGA 1 cut(s) 322
CfoI GCGC 1 cut(s) 253
CsiI ACCWGGT 1 cut(s) 42
CviAII CATG 2 cut(s) 200, 323
CviJI RGCY 4 cut(s) 50, 61, 226, 281
CviKI_1 RGCY 4 cut(s) 50, 61, 226, 281
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Eco31I GGTCTC 1 cut(s) 98
Eco47III AGCGCT 1 cut(s) 252
Eco57I CTGAAG 1 cut(s) 90
Eco72I CACGTG 1 cut(s) 115
EcoRII CCWGG 1 cut(s) 42
EcoT22I ATGCAT 1 cut(s) 20
FaeI CATG 2 cut(s) 203, 326
FaiI YATR 9 cut(s) 20, 65, 147, 156, 201, 284, 289, 311, 324
FatI CATG 2 cut(s) 199, 322
Fnu4HI GCNGC 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 35
GlaI GCGC 1 cut(s) 252
GluI GCNGC 1 cut(s) 35
HaeII RGCGCY 1 cut(s) 254
HhaI GCGC 1 cut(s) 253
Hin1II CATG 2 cut(s) 203, 326
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 1 cut(s) 122
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 2 cut(s) 220, 323
HpyAV CCTTC 2 cut(s) 61, 114
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 3 cut(s) 18, 291, 309
HpyF10VI GCNNNNNNNGC 3 cut(s) 297, 306, 315
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 2 cut(s) 203, 326
HspAI GCGC 1 cut(s) 251
LpnPI CCDG 5 cut(s) 29, 56, 74, 207, 243
Lsp1109I GCAGC 1 cut(s) 21
LweI GCATC 1 cut(s) 21
MabI ACCWGGT 1 cut(s) 42
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 2 cut(s) 115, 328
MboII GAAGA 4 cut(s) 16, 46, 88, 143
MhlI GDGCHC 1 cut(s) 168
MluCI AATT 1 cut(s) 151
MlyI GAGTC 1 cut(s) 116
MnlI CCTC 3 cut(s) 229, 265, 319
Mph1103I ATGCAT 1 cut(s) 20
MslI CAYNNNNRTG 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 44
MvaI CCWGG 1 cut(s) 44
MwoI GCNNNNNNNGC 3 cut(s) 297, 306, 315
NlaIII CATG 2 cut(s) 203, 326
NmuCI GTSAC 2 cut(s) 115, 328
NsiI ATGCAT 1 cut(s) 20
PagI TCATGA 1 cut(s) 322
PkrI GCNGC 1 cut(s) 36
PleI GAGTC 1 cut(s) 116
PmaCI CACGTG 1 cut(s) 115
PmlI CACGTG 1 cut(s) 115
PpsI GAGTC 1 cut(s) 116
Ppu21I YACGTR 1 cut(s) 115
Psp6I CCWGG 1 cut(s) 42
PspCI CACGTG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 42
RseI CAYNNNNRTG 1 cut(s) 29
SatI GCNGC 1 cut(s) 35
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 1 cut(s) 44
SduI GDGCHC 1 cut(s) 168
SetI ASST 6 cut(s) 45, 63, 106, 117, 228, 330
SexAI ACCWGGT 1 cut(s) 42
SfaNI GCATC 1 cut(s) 21
SfcI CTRYAG 1 cut(s) 282
SmiMI CAYNNNNRTG 1 cut(s) 29
Sse9I AATT 1 cut(s) 151
SsiI CCGC 1 cut(s) 10
StyD4I CCNGG 1 cut(s) 42
TaiI ACGT 1 cut(s) 117
TaqII GACCGA 1 cut(s) 233
TasI AATT 1 cut(s) 151
TseFI GTSAC 2 cut(s) 115, 328
TseI GCWGC 1 cut(s) 34
Tsp45I GTSAC 2 cut(s) 115, 328
TspDTI ATGAA 2 cut(s) 17, 188
Zsp2I ATGCAT 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.