Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0015700

Physical Location & Seq

Genomic Coordinates Reverse (-)

16711695 .. 16712276

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g11420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGATTTCTCCTGTGTTGGTATTAACTTCCCCAAATGGCGCAAAGGCCTTCAAAACCTGCTAATCTTTGCACACTGCTTAAAGATCGTACTGATAGTGGCGCTTAACCATCTGGGACTGCTCAAACCTGCAGTACAGATCTCTGAGCCAACTGCTGACTCCATGGACCGCCACCATCCGAATCCGACCAATTCGATACTGGCGATCGATCCCCTGTGCCCGTCGATAGTCCCGGTCCCAATCCACGTTCTAACAGAATACATCAAGAGGCGGCTTCCGGTGGTGGAATTTAGTCAGGTTTTCGAAAAATACACAAAACTTGGAGATCAAGATACTGCTTGCAGTATATGCTTGGAGTGCATAGAGAGGAGCCATGAGGTGAGGGAGCAGTCTAACTGCGATCATTTGTTTCACAGGGAGTGTCTGGATAGTTGGGTCAATCGGGGCCACGTGACCTGCCCCTTGTGCCGAGCTACGCTGTTTCCGGCCAAGAGCAAAACGGCGAGCTGCGGCGGAGGAAATTTAGGGACGACGGAGAGGGGTGATGCCTACTTTGATAGGTTGGAATTCATTGTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

194

Amino Acids

21.73

Weight (kDa)

7.08

Isoelectric Point (pI)

48.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	113 - 157	1.5e-09	Ring finger domain
zf-C3HC4	PF00097	114 - 156	6.3e-08	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	115 - 157	8.2e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015700)

Species	Orthologous Gene IDs
malus_domestica	MD06G1122600.v1.1 MD06G1122900.v1.1 MD06G1123000.v1.1 MD06G1123400.v1.1 MD14G1139500.v1.1 MD14G1139600.v1.1 MD14G1139700.v1.1
prunus_persica	Prupe.5G134100_v2.0.a1
pyrus_communis	pycom06g11420 pycom14g11530
rosa_chinensis	RchiOBHm_Chr7g0187721
rosa_multiflora	Rmu_sc0004483.1_g000026
rosa_roxburghii	Rroxscaffold_3G00267120
rosa_samantha	Rh7BG090700 Rh7CG089700 Rh7DG091200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	66, 136, 464
AciI	CCGC	4 cut(s)	169, 271, 510, 513
AclWI	GGATC	1 cut(s)	203
AcoI	YGGCCR	1 cut(s)	486
AcsI	RAATTY	3 cut(s)	287, 520, 566
AcvI	CACGTG	1 cut(s)	451
AfaI	GTAC	2 cut(s)	90, 135
AgsI	TTSAA	1 cut(s)	53
AluBI	AGCT	2 cut(s)	473, 507
AluI	AGCT	2 cut(s)	473, 507
AlwI	GGATC	1 cut(s)	203
AoxI	GGCC	3 cut(s)	46, 445, 486
ApeKI	GCWGC	1 cut(s)	507
ApoI	RAATTY	3 cut(s)	287, 520, 566
AspLEI	GCGC	2 cut(s)	42, 103
AspS9I	GGNCC	3 cut(s)	166, 235, 445
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	2 cut(s)	391, 554
AsuII	TTCGAA	1 cut(s)	303
AvaII	GGWCC	2 cut(s)	166, 235
BaeGI	GKGCMC	1 cut(s)	221
BbrPI	CACGTG	1 cut(s)	451
BbvI	GCAGC	1 cut(s)	494
BccI	CCATC	2 cut(s)	117, 183
BceAI	ACGGC	1 cut(s)	516
BcnI	CCSGG	1 cut(s)	233
BfmI	CTRYAG	1 cut(s)	129
BfoI	RGCGCY	1 cut(s)	104
BfuAI	ACCTGC	3 cut(s)	66, 136, 464
BglII	AGATCT	1 cut(s)	138
BisI	GCNGC	3 cut(s)	272, 508, 511
BlsI	GCNGC	3 cut(s)	273, 509, 512
Bme1390I	CCNGG	1 cut(s)	233
Bme18I	GGWCC	2 cut(s)	166, 235
BmgT120I	GGNCC	3 cut(s)	166, 235, 445
BmiI	GGNNCC	3 cut(s)	237, 371, 446
BmrFI	CCNGG	1 cut(s)	233
BmsI	GCATC	1 cut(s)	535
Bpu14I	TTCGAA	1 cut(s)	303
BpuMI	CCSGG	1 cut(s)	233
Bsa29I	ATCGAT	1 cut(s)	207
BsaAI	YACGTR	1 cut(s)	451
BsaJI	CCNNGG	1 cut(s)	162
BsaWI	WCCGGW	1 cut(s)	277
Bse1I	ACTGG	1 cut(s)	204
BseCI	ATCGAT	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	1 cut(s)	204
BseRI	GAGGAG	1 cut(s)	382
BseSI	GKGCMC	1 cut(s)	221
BseXI	GCAGC	1 cut(s)	494
Bsh1285I	CGRYCG	1 cut(s)	207
BshFI	GGCC	3 cut(s)	48, 447, 488
BshVI	ATCGAT	1 cut(s)	207
BsiEI	CGRYCG	1 cut(s)	207
BsiSI	CCGG	3 cut(s)	233, 278, 485
BslFI	GGGAC	4 cut(s)	129, 215, 221, 541
BsmFI	GGGAC	4 cut(s)	129, 215, 221, 541
BsnI	GGCC	3 cut(s)	48, 447, 488
Bsp119I	TTCGAA	1 cut(s)	303
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp143I	GATC	6 cut(s)	84, 138, 204, 208, 325, 400
Bsp19I	CCATGG	1 cut(s)	162
BspACI	CCGC	4 cut(s)	169, 271, 510, 513
BspANI	GGCC	3 cut(s)	48, 447, 488
BspCNI	CTCAG	1 cut(s)	136
BspDI	ATCGAT	1 cut(s)	207
BspLI	GGNNCC	3 cut(s)	237, 371, 446
BspMAI	CTGCAG	1 cut(s)	133
BspMI	ACCTGC	3 cut(s)	66, 136, 464
BspPI	GGATC	1 cut(s)	203
BspT104I	TTCGAA	1 cut(s)	303
BsrI	ACTGG	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	6 cut(s)	84, 138, 204, 208, 325, 400
BssT1I	CCWWGG	1 cut(s)	162
BstAPI	GCANNNNNTGC	1 cut(s)	348
BstBAI	YACGTR	1 cut(s)	451
BstBI	TTCGAA	1 cut(s)	303
BstC8I	GCNNGC	2 cut(s)	340, 505
BstDEI	CTNAG	1 cut(s)	144
BstDSI	CCRYGG	1 cut(s)	162
BstF5I	GGATG	1 cut(s)	175
BstH2I	RGCGCY	1 cut(s)	104
BstHHI	GCGC	2 cut(s)	42, 103
BstKTI	GATC	6 cut(s)	87, 141, 207, 211, 328, 403
BstMBI	GATC	6 cut(s)	84, 138, 204, 208, 325, 400
BstMCI	CGRYCG	1 cut(s)	207
BstMWI	GCNNNNNNNGC	3 cut(s)	348, 357, 465
BstSCI	CCNGG	1 cut(s)	231
BstSFI	CTRYAG	1 cut(s)	129
BstSLI	GKGCMC	1 cut(s)	221
BstV1I	GCAGC	1 cut(s)	494
BstX2I	RGATCY	1 cut(s)	138
BstYI	RGATCY	1 cut(s)	138
Bsu15I	ATCGAT	1 cut(s)	207
BsuRI	GGCC	3 cut(s)	48, 447, 488
BsuTUI	ATCGAT	1 cut(s)	207
BtgI	CCRYGG	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	175
BtsI	GCAGTG	1 cut(s)	73
BtsIMutI	CAGTG	1 cut(s)	73
BveI	ACCTGC	3 cut(s)	66, 136, 464
Cac8I	GCNNGC	2 cut(s)	340, 505
CfoI	GCGC	2 cut(s)	42, 103
Cfr13I	GGNCC	3 cut(s)	166, 235, 445
ClaI	ATCGAT	1 cut(s)	207
Csp6I	GTAC	2 cut(s)	89, 134
CviAII	CATG	2 cut(s)	163, 374
CviJI	RGCY	8 cut(s)	48, 148, 274, 372, 447, 473, 488, 507
CviKI_1	RGCY	8 cut(s)	48, 148, 274, 372, 447, 473, 488, 507
CviQI	GTAC	2 cut(s)	89, 134
DdeI	CTNAG	1 cut(s)	144
DpnI	GATC	6 cut(s)	86, 140, 206, 210, 327, 402
DpnII	GATC	6 cut(s)	84, 138, 204, 208, 325, 400
EaeI	YGGCCR	1 cut(s)	486
EciI	GGCGGA	1 cut(s)	528
Eco130I	CCWWGG	1 cut(s)	162
Eco147I	AGGCCT	1 cut(s)	48
Eco47I	GGWCC	2 cut(s)	166, 235
Eco72I	CACGTG	1 cut(s)	451
EcoRI	GAATTC	1 cut(s)	566
EcoT14I	CCWWGG	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	2 cut(s)	166, 377
FaiI	YATR	5 cut(s)	164, 347, 349, 362, 375
FaqI	GGGAC	4 cut(s)	129, 215, 221, 541
FatI	CATG	2 cut(s)	162, 373
Fnu4HI	GCNGC	3 cut(s)	272, 508, 511
FokI	GGATG	1 cut(s)	162
Fsp4HI	GCNGC	3 cut(s)	272, 508, 511
GlaI	GCGC	2 cut(s)	41, 102
GluI	GCNGC	3 cut(s)	272, 508, 511
HaeII	RGCGCY	1 cut(s)	104
HaeIII	GGCC	3 cut(s)	48, 447, 488
HapII	CCGG	3 cut(s)	233, 278, 485
HhaI	GCGC	2 cut(s)	42, 103
Hin1II	CATG	2 cut(s)	166, 377
Hin6I	GCGC	2 cut(s)	40, 101
HinP1I	GCGC	2 cut(s)	40, 101
HinfI	GANTC	2 cut(s)	158, 181
HpaII	CCGG	3 cut(s)	233, 278, 485
HphI	GGTGA	2 cut(s)	391, 554
Hpy188I	TCNGA	3 cut(s)	145, 180, 186
Hpy188III	TCNNGA	3 cut(s)	265, 329, 425
Hpy99I	CGWCG	2 cut(s)	226, 535
HpyAV	CCTTC	1 cut(s)	59
HpyCH4IV	ACGT	2 cut(s)	246, 450
HpyCH4V	TGCA	4 cut(s)	71, 131, 342, 360
HpyF10VI	GCNNNNNNNGC	3 cut(s)	348, 357, 465
HpyF3I	CTNAG	1 cut(s)	144
HpySE526I	ACGT	2 cut(s)	246, 450
Hsp92II	CATG	2 cut(s)	166, 377
HspAI	GCGC	2 cut(s)	40, 101
Kzo9I	GATC	6 cut(s)	84, 138, 204, 208, 325, 400
LmnI	GCTCC	2 cut(s)	369, 385
Lsp1109I	GCAGC	1 cut(s)	494
LweI	GCATC	1 cut(s)	535
MaeII	ACGT	2 cut(s)	246, 450
MaeIII	GTNAC	1 cut(s)	451
MalI	GATC	6 cut(s)	86, 140, 206, 210, 327, 402
MboI	GATC	6 cut(s)	84, 138, 204, 208, 325, 400
MflI	RGATCY	1 cut(s)	138
MhlI	GDGCHC	1 cut(s)	221
MluCI	AATT	4 cut(s)	190, 287, 520, 566
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	2 cut(s)	209, 543
MnlI	CCTC	6 cut(s)	261, 360, 370, 375, 509, 531
MseI	TTAA	3 cut(s)	24, 80, 105
MspI	CCGG	3 cut(s)	233, 278, 485
MspR9I	CCNGG	1 cut(s)	233
MwoI	GCNNNNNNNGC	3 cut(s)	348, 357, 465
NciI	CCSGG	1 cut(s)	233
NcoI	CCATGG	1 cut(s)	162
NdeII	GATC	6 cut(s)	84, 138, 204, 208, 325, 400
NlaIII	CATG	2 cut(s)	166, 377
NlaIV	GGNNCC	3 cut(s)	237, 371, 446
NmeAIII	GCCGAG	1 cut(s)	494
NmuCI	GTSAC	1 cut(s)	451
NspV	TTCGAA	1 cut(s)	303
PceI	AGGCCT	1 cut(s)	48
PcsI	WCGNNNNNNNCGW	1 cut(s)	200
PfeI	GAWTC	1 cut(s)	181
PkrI	GCNGC	3 cut(s)	273, 509, 512
Ple19I	CGATCG	1 cut(s)	207
PleI	GAGTC	1 cut(s)	152
PmaCI	CACGTG	1 cut(s)	451
PmlI	CACGTG	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	152
Ppu21I	YACGTR	1 cut(s)	451
PspCI	CACGTG	1 cut(s)	451
PspN4I	GGNNCC	3 cut(s)	237, 371, 446
PspPI	GGNCC	3 cut(s)	166, 235, 445
PstI	CTGCAG	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	138
PvuI	CGATCG	1 cut(s)	207
RsaI	GTAC	2 cut(s)	90, 135
RsaNI	GTAC	2 cut(s)	89, 134
SaqAI	TTAA	3 cut(s)	24, 80, 105
SatI	GCNGC	3 cut(s)	272, 508, 511
Sau3AI	GATC	6 cut(s)	84, 138, 204, 208, 325, 400
Sau96I	GGNCC	3 cut(s)	166, 235, 445
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	1 cut(s)	233
SduI	GDGCHC	1 cut(s)	221
SfaNI	GCATC	1 cut(s)	535
SfcI	CTRYAG	1 cut(s)	129
SfuI	TTCGAA	1 cut(s)	303
SinI	GGWCC	2 cut(s)	166, 235
Sse9I	AATT	4 cut(s)	190, 287, 520, 566
SseBI	AGGCCT	1 cut(s)	48
SsiI	CCGC	4 cut(s)	169, 271, 510, 513
StuI	AGGCCT	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	231
StyI	CCWWGG	1 cut(s)	162
TaiI	ACGT	2 cut(s)	249, 453
TaqI	TCGA	4 cut(s)	194, 207, 224, 303
TasI	AATT	4 cut(s)	190, 287, 520, 566
TatI	WGTACW	1 cut(s)	133
TauI	GCSGC	2 cut(s)	274, 513
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	3 cut(s)	24, 80, 105
Tru9I	TTAA	3 cut(s)	24, 80, 105
TscAI	CASTG	1 cut(s)	80
TseFI	GTSAC	1 cut(s)	451
TseI	GCWGC	1 cut(s)	507
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	1 cut(s)	559
TspGWI	ACGGA	1 cut(s)	548
TspRI	CASTG	1 cut(s)	80
VpaK11BI	GGWCC	2 cut(s)	166, 235
XapI	RAATTY	3 cut(s)	287, 520, 566
XcmI	CCANNNNNNNNNTGG	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.