Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0015700

Physical Location & Seq

Genomic Coordinates Reverse (-)

14629999 .. 14630581

Gene Structure 583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g11530.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGAATTCCCCTGCGTTATTAGCATGTCCAAATTGCGCAAAAGCCTTGAAAAACTTCTAATCTTTACACACTGCTTAAAGATCGTACTGATAGTAGCACTTAGCCATCTGGGACTGCTTAAACCTGCAGTACAGATGAATGAGCCAACTGCCGACTCCATGGAGCACCACCAGCATCCGAATCCGAACAATTCGATACTGGCGCTCGATCCTCAGTGCCCGTCGATAGTCTCGGTCCCGATCCACGTTCTAACGGAATACATCAAGAGGCGGCTTCCGGTGGTAGAGTTTGGTCAAGTTTTCGAAAAATACACAAAGCTTGGAGATCAAGATACAGCTTGTAGTATATGCTTGGAGTGCATAGAGAGGAGCCATGAGGTGAGGGAGCAGTTTGGGGTCAATCAGGGGCAGGTGACCTGCCCTTTGTGCCGAGTAATGTTGTTTCCCAGCAAGAGCGAAACAGCAAGCTGCGGCGGAGGAAATTTAGGGTCGACGGAGAGGGATGACGCTTACTTCGAAAGGTTAGAATTCATTGTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

181

Amino Acids

20.23

Weight (kDa)

6.16

Isoelectric Point (pI)

42.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015700)

Species	Orthologous Gene IDs
malus_domestica	MD06G1122600.v1.1 MD06G1122900.v1.1 MD06G1123000.v1.1 MD06G1123400.v1.1 MD14G1139500.v1.1 MD14G1139600.v1.1 MD14G1139700.v1.1
prunus_persica	Prupe.5G134100_v2.0.a1
pyrus_communis	pycom06g11420 pycom14g11530
rosa_chinensis	RchiOBHm_Chr7g0187721
rosa_multiflora	Rmu_sc0004483.1_g000026
rosa_roxburghii	Rroxscaffold_3G00267120
rosa_samantha	Rh7BG090700 Rh7CG089700 Rh7DG091200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	400
Acc16I	TGCGCA	1 cut(s)	38
Acc36I	ACCTGC	3 cut(s)	133, 400, 425
AccI	GTMKAC	1 cut(s)	491
AciI	CCGC	3 cut(s)	271, 471, 474
AclWI	GGATC	2 cut(s)	203, 235
AcsI	RAATTY	3 cut(s)	5, 481, 527
AfaI	GTAC	2 cut(s)	87, 132
AgsI	TTSAA	1 cut(s)	50
AluBI	AGCT	3 cut(s)	319, 338, 468
AluI	AGCT	3 cut(s)	319, 338, 468
Alw21I	GWGCWC	1 cut(s)	168
Alw26I	GTCTC	1 cut(s)	235
AlwI	GGATC	2 cut(s)	203, 235
ApeKI	GCWGC	1 cut(s)	468
ApoI	RAATTY	3 cut(s)	5, 481, 527
ArsI	GACNNNNNNTTYG	4 cut(s)	406, 438, 497, 529
Asp700I	GAANNNNTTC	1 cut(s)	54
AspLEI	GCGC	2 cut(s)	39, 205
AspS9I	GGNCC	1 cut(s)	235
AsuHPI	GGTGA	2 cut(s)	391, 424
AsuII	TTCGAA	2 cut(s)	303, 516
AvaII	GGWCC	1 cut(s)	235
BaeGI	GKGCMC	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	455
BccI	CCATC	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	235
BfmI	CTRYAG	1 cut(s)	126
BfoI	RGCGCY	1 cut(s)	206
BfuAI	ACCTGC	3 cut(s)	133, 400, 425
BisI	GCNGC	3 cut(s)	272, 469, 472
BlsI	GCNGC	3 cut(s)	273, 470, 473
Bme18I	GGWCC	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	235
BmiI	GGNNCC	2 cut(s)	237, 371
BmsI	GCATC	1 cut(s)	184
Bpu14I	TTCGAA	2 cut(s)	303, 516
BsaJI	CCNNGG	1 cut(s)	159
BsaWI	WCCGGW	1 cut(s)	277
Bse1I	ACTGG	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	2 cut(s)	175, 508
BseMII	CTCAG	1 cut(s)	227
BseNI	ACTGG	1 cut(s)	204
BseRI	GAGGAG	1 cut(s)	382
BseSI	GKGCMC	1 cut(s)	221
BseXI	GCAGC	1 cut(s)	455
BseYI	CCCAGC	1 cut(s)	446
BsiHKAI	GWGCWC	1 cut(s)	168
BsiSI	CCGG	1 cut(s)	278
BslFI	GGGAC	2 cut(s)	126, 221
BsmAI	GTCTC	1 cut(s)	235
BsmFI	GGGAC	2 cut(s)	126, 221
Bsp119I	TTCGAA	2 cut(s)	303, 516
Bsp1286I	GDGCHC	2 cut(s)	168, 221
Bsp143I	GATC	4 cut(s)	81, 208, 240, 325
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	3 cut(s)	271, 471, 474
BspCNI	CTCAG	1 cut(s)	226
BspLI	GGNNCC	2 cut(s)	237, 371
BspMAI	CTGCAG	1 cut(s)	130
BspMI	ACCTGC	3 cut(s)	133, 400, 425
BspPI	GGATC	2 cut(s)	203, 235
BspT104I	TTCGAA	2 cut(s)	303, 516
BsrI	ACTGG	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	4 cut(s)	81, 208, 240, 325
BssT1I	CCWWGG	1 cut(s)	159
BstBI	TTCGAA	2 cut(s)	303, 516
BstC8I	GCNNGC	1 cut(s)	466
BstDEI	CTNAG	2 cut(s)	101, 213
BstDSI	CCRYGG	1 cut(s)	159
BstEII	GGTNACC	1 cut(s)	412
BstF5I	GGATG	2 cut(s)	175, 508
BstH2I	RGCGCY	1 cut(s)	206
BstHHI	GCGC	2 cut(s)	39, 205
BstKTI	GATC	4 cut(s)	84, 211, 243, 328
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	4 cut(s)	81, 208, 240, 325
BstMWI	GCNNNNNNNGC	4 cut(s)	21, 172, 357, 426
BstNSI	RCATGY	1 cut(s)	28
BstPI	GGTNACC	1 cut(s)	412
BstSFI	CTRYAG	1 cut(s)	126
BstSLI	GKGCMC	1 cut(s)	221
BstV1I	GCAGC	1 cut(s)	455
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	2 cut(s)	175, 508
BtsI	GCAGTG	1 cut(s)	70
BtsIMutI	CAGTG	2 cut(s)	70, 221
BveI	ACCTGC	3 cut(s)	133, 400, 425
Cac8I	GCNNGC	1 cut(s)	466
CfoI	GCGC	2 cut(s)	39, 205
Cfr13I	GGNCC	1 cut(s)	235
CseI	GACGC	1 cut(s)	515
Csp6I	GTAC	2 cut(s)	86, 131
CviAII	CATG	3 cut(s)	25, 160, 374
CviJI	RGCY	8 cut(s)	45, 105, 145, 274, 319, 338, 372, 468
CviKI_1	RGCY	8 cut(s)	45, 105, 145, 274, 319, 338, 372, 468
CviQI	GTAC	2 cut(s)	86, 131
DdeI	CTNAG	2 cut(s)	101, 213
DpnI	GATC	4 cut(s)	83, 210, 242, 327
DpnII	GATC	4 cut(s)	81, 208, 240, 325
EciI	GGCGGA	1 cut(s)	489
Eco130I	CCWWGG	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	235
Eco91I	GGTNACC	1 cut(s)	412
EcoO65I	GGTNACC	1 cut(s)	412
EcoRI	GAATTC	2 cut(s)	5, 527
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	3 cut(s)	28, 163, 377
FaiI	YATR	6 cut(s)	26, 161, 347, 349, 362, 375
FaqI	GGGAC	2 cut(s)	126, 221
FatI	CATG	3 cut(s)	24, 159, 373
FblI	GTMKAC	1 cut(s)	491
Fnu4HI	GCNGC	3 cut(s)	272, 469, 472
FokI	GGATG	2 cut(s)	162, 515
Fsp4HI	GCNGC	3 cut(s)	272, 469, 472
FspI	TGCGCA	1 cut(s)	38
GlaI	GCGC	2 cut(s)	38, 204
GluI	GCNGC	3 cut(s)	272, 469, 472
GsaI	CCCAGC	1 cut(s)	450
HaeII	RGCGCY	1 cut(s)	206
HapII	CCGG	1 cut(s)	278
HgaI	GACGC	1 cut(s)	515
HhaI	GCGC	2 cut(s)	39, 205
Hin1II	CATG	3 cut(s)	28, 163, 377
Hin6I	GCGC	2 cut(s)	37, 203
HinP1I	GCGC	2 cut(s)	37, 203
HincII	GTYRAC	1 cut(s)	492
HindII	GTYRAC	1 cut(s)	492
HindIII	AAGCTT	1 cut(s)	317
HinfI	GANTC	2 cut(s)	155, 181
HpaII	CCGG	1 cut(s)	278
HphI	GGTGA	2 cut(s)	391, 424
Hpy166II	GTNNAC	1 cut(s)	492
Hpy188I	TCNGA	2 cut(s)	180, 186
Hpy188III	TCNNGA	3 cut(s)	238, 265, 329
Hpy8I	GTNNAC	1 cut(s)	492
Hpy99I	CGWCG	2 cut(s)	226, 496
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	2 cut(s)	128, 360
HpyF10VI	GCNNNNNNNGC	4 cut(s)	21, 172, 357, 426
HpyF3I	CTNAG	2 cut(s)	101, 213
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	3 cut(s)	28, 163, 377
HspAI	GCGC	2 cut(s)	37, 203
Kzo9I	GATC	4 cut(s)	81, 208, 240, 325
LmnI	GCTCC	3 cut(s)	163, 369, 385
Lsp1109I	GCAGC	1 cut(s)	455
LweI	GCATC	1 cut(s)	184
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	4 cut(s)	83, 210, 242, 327
MboI	GATC	4 cut(s)	81, 208, 240, 325
MhlI	GDGCHC	2 cut(s)	168, 221
MluCI	AATT	5 cut(s)	5, 32, 190, 481, 527
MlyI	GAGTC	1 cut(s)	149
MnlI	CCTC	7 cut(s)	222, 261, 360, 370, 375, 470, 492
MroXI	GAANNNNTTC	1 cut(s)	54
MseI	TTAA	2 cut(s)	77, 120
MspI	CCGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	4 cut(s)	21, 172, 357, 426
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	4 cut(s)	81, 208, 240, 325
NlaIII	CATG	3 cut(s)	28, 163, 377
NlaIV	GGNNCC	2 cut(s)	237, 371
NmeAIII	GCCGAG	1 cut(s)	455
NmuCI	GTSAC	1 cut(s)	412
NsbI	TGCGCA	1 cut(s)	38
NspI	RCATGY	1 cut(s)	28
NspV	TTCGAA	2 cut(s)	303, 516
PaqCI	CACCTGC	1 cut(s)	400
PcsI	WCGNNNNNNNCGW	1 cut(s)	513
PdmI	GAANNNNTTC	1 cut(s)	54
PfeI	GAWTC	1 cut(s)	181
PkrI	GCNGC	3 cut(s)	273, 470, 473
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
PspEI	GGTNACC	1 cut(s)	412
PspFI	CCCAGC	1 cut(s)	446
PspN4I	GGNNCC	2 cut(s)	237, 371
PspPI	GGNCC	1 cut(s)	235
PstI	CTGCAG	1 cut(s)	130
RsaI	GTAC	2 cut(s)	87, 132
RsaNI	GTAC	2 cut(s)	86, 131
SalI	GTCGAC	1 cut(s)	490
SaqAI	TTAA	2 cut(s)	77, 120
SatI	GCNGC	3 cut(s)	272, 469, 472
Sau3AI	GATC	4 cut(s)	81, 208, 240, 325
Sau96I	GGNCC	1 cut(s)	235
SchI	GAGTC	1 cut(s)	149
SduI	GDGCHC	2 cut(s)	168, 221
SetI	ASST	9 cut(s)	127, 249, 321, 340, 381, 414, 419, 470, 524
SfaNI	GCATC	1 cut(s)	184
SfcI	CTRYAG	1 cut(s)	126
SfuI	TTCGAA	2 cut(s)	303, 516
SinI	GGWCC	1 cut(s)	235
Sse9I	AATT	5 cut(s)	5, 32, 190, 481, 527
SsiI	CCGC	3 cut(s)	271, 471, 474
StyI	CCWWGG	1 cut(s)	159
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	6 cut(s)	194, 207, 224, 303, 491, 516
TaqII	GACCGA	1 cut(s)	223
TasI	AATT	5 cut(s)	5, 32, 190, 481, 527
TatI	WGTACW	1 cut(s)	130
TauI	GCSGC	2 cut(s)	274, 474
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	2 cut(s)	77, 120
Tru9I	TTAA	2 cut(s)	77, 120
TscAI	CASTG	2 cut(s)	77, 221
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	1 cut(s)	468
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	2 cut(s)	152, 520
TspGWI	ACGGA	2 cut(s)	269, 509
TspRI	CASTG	2 cut(s)	77, 221
VpaK11BI	GGWCC	1 cut(s)	235
XapI	RAATTY	3 cut(s)	5, 481, 527
XceI	RCATGY	1 cut(s)	28
XmiI	GTMKAC	1 cut(s)	491
XmnI	GAANNNNTTC	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.