Rh7CG089700

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0015700
Physical Location & Seq
Reverse (-)
6755730 .. 6756068
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG089700.1

Sequence Viewer

Length: 339 bp
ATGAAGATGCAGAAATGCATAAGCATTGAGATGCTGCTAAACCTGGTAGCCTTCTTCAAGCTCATAGTTCTAATGGCACTCAACCATCTGGGTCTCTTCAAACCTTCAGAACACATGACTGACTCCACAGAAGAACAACAACATTATACCAATTATGGTGTTGTGCTCAATCATCTGTGTCCATCAATAATCCCAGTACATGTTCTAACAGCACACATCAAGAAGCTTCCAGTAGTGGAGTTCGGTCAAGCGCTTGAAAAATACAAAGATGAGGGCAAGGCTATAGTATGCAACATTTGCTTGGACTGCATAGAAAGCAGTCATGAGGTGACAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

112

Amino Acids

12.69

Weight (kDa)

5.94

Isoelectric Point (pI)

48.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 90
AfaI GTAC 1 cut(s) 198
AfeI AGCGCT 1 cut(s) 252
AflIII ACRYGT 1 cut(s) 199
AgsI TTSAA 3 cut(s) 58, 100, 257
AjnI CCWGG 1 cut(s) 42
AluBI AGCT 2 cut(s) 61, 226
AluI AGCT 2 cut(s) 61, 226
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 98
Aor51HI AGCGCT 1 cut(s) 252
ApeKI GCWGC 1 cut(s) 34
AspLEI GCGC 1 cut(s) 253
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 1 cut(s) 21
BccI CCATC 2 cut(s) 93, 190
BciT130I CCWGG 1 cut(s) 44
BcoDI GTCTC 1 cut(s) 98
BfmI CTRYAG 1 cut(s) 282
BfoI RGCGCY 1 cut(s) 254
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
Bme1390I CCNGG 1 cut(s) 44
BmrFI CCNGG 1 cut(s) 44
BmrI ACTGGG 1 cut(s) 188
BmsI GCATC 1 cut(s) 21
BmuI ACTGGG 1 cut(s) 188
BsaI GGTCTC 1 cut(s) 98
Bse1I ACTGG 2 cut(s) 194, 230
BseBI CCWGG 1 cut(s) 44
BseNI ACTGG 2 cut(s) 194, 230
BseXI GCAGC 1 cut(s) 21
BsiHKAI GWGCWC 1 cut(s) 168
BsmAI GTCTC 1 cut(s) 98
Bso31I GGTCTC 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 168
BspHI TCATGA 1 cut(s) 322
BspTNI GGTCTC 1 cut(s) 98
BsrI ACTGG 2 cut(s) 194, 230
Bst2UI CCWGG 1 cut(s) 44
Bst6I CTCTTC 1 cut(s) 101
BstAPI GCANNNNNTGC 1 cut(s) 297
BstH2I RGCGCY 1 cut(s) 254
BstHHI GCGC 1 cut(s) 253
BstMAI GTCTC 1 cut(s) 98
BstMWI GCNNNNNNNGC 3 cut(s) 297, 306, 315
BstNI CCWGG 1 cut(s) 44
BstNSI RCATGY 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 42
BstSFI CTRYAG 1 cut(s) 282
BstV1I GCAGC 1 cut(s) 21
CciI TCATGA 1 cut(s) 322
CfoI GCGC 1 cut(s) 253
CsiI ACCWGGT 1 cut(s) 42
Csp6I GTAC 1 cut(s) 197
CviAII CATG 3 cut(s) 115, 200, 323
CviJI RGCY 4 cut(s) 50, 61, 226, 281
CviKI_1 RGCY 4 cut(s) 50, 61, 226, 281
CviQI GTAC 1 cut(s) 197
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Eco31I GGTCTC 1 cut(s) 98
Eco47III AGCGCT 1 cut(s) 252
Eco57I CTGAAG 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 42
EcoT22I ATGCAT 1 cut(s) 20
FaeI CATG 3 cut(s) 118, 203, 326
FatI CATG 3 cut(s) 114, 199, 322
Fnu4HI GCNGC 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 35
GlaI GCGC 1 cut(s) 252
GluI GCNGC 1 cut(s) 35
HaeII RGCGCY 1 cut(s) 254
HhaI GCGC 1 cut(s) 253
Hin1II CATG 3 cut(s) 118, 203, 326
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 1 cut(s) 122
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 2 cut(s) 220, 323
HpyAV CCTTC 2 cut(s) 61, 114
HpyCH4V TGCA 4 cut(s) 10, 18, 291, 309
HpyF10VI GCNNNNNNNGC 3 cut(s) 297, 306, 315
Hsp92II CATG 3 cut(s) 118, 203, 326
HspAI GCGC 1 cut(s) 251
LpnPI CCDG 5 cut(s) 29, 56, 74, 207, 243
Lsp1109I GCAGC 1 cut(s) 21
LweI GCATC 1 cut(s) 21
MabI ACCWGGT 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 328
MboII GAAGA 4 cut(s) 16, 46, 88, 143
MhlI GDGCHC 1 cut(s) 168
MluCI AATT 1 cut(s) 151
MlyI GAGTC 1 cut(s) 116
MnlI CCTC 2 cut(s) 265, 319
Mph1103I ATGCAT 1 cut(s) 20
MslI CAYNNNNRTG 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 44
MvaI CCWGG 1 cut(s) 44
MwoI GCNNNNNNNGC 3 cut(s) 297, 306, 315
NlaIII CATG 3 cut(s) 118, 203, 326
NmuCI GTSAC 1 cut(s) 328
NsiI ATGCAT 1 cut(s) 20
NspI RCATGY 1 cut(s) 203
PagI TCATGA 1 cut(s) 322
PciI ACATGT 1 cut(s) 199
PkrI GCNGC 1 cut(s) 36
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PscI ACATGT 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 42
PspGI CCWGG 1 cut(s) 42
RsaI GTAC 1 cut(s) 198
RsaNI GTAC 1 cut(s) 197
RseI CAYNNNNRTG 1 cut(s) 29
SatI GCNGC 1 cut(s) 35
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 1 cut(s) 44
SduI GDGCHC 1 cut(s) 168
SetI ASST 5 cut(s) 45, 63, 106, 228, 330
SexAI ACCWGGT 1 cut(s) 42
SfaNI GCATC 1 cut(s) 21
SfcI CTRYAG 1 cut(s) 282
SmiMI CAYNNNNRTG 1 cut(s) 29
Sse9I AATT 1 cut(s) 151
StyD4I CCNGG 1 cut(s) 42
TaqII GACCGA 1 cut(s) 233
TasI AATT 1 cut(s) 151
TatI WGTACW 1 cut(s) 196
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 1 cut(s) 17
XceI RCATGY 1 cut(s) 203
Zsp2I ATGCAT 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.