Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0015700

Physical Location & Seq

Genomic Coordinates Reverse (-)

26438488 .. 26439042

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1122900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGATCCCCTCTCTGGTATTAAGATACCCAAATGGCGGAAAACCATAAAAACACTGCTAGTCCTAGTGCATTGCTTCAAGATCTTGGTGGTAGTGGCACTTAGCCATCTAGGGTTCCTGAAACCTCCACTGCAAATGACTGAGTCCATGGAAGAACAGCATAGCCAAAACCCTAACGGTCATATTCTCGTGTTCGACCCTCTGTGCCAGTCGATACTCCCCGTTCCGATCCACGTCTTAACAGCGTATATCAAGAGGCTTCCGGTAGTGGAGTTTGGTCGAGTTTTCGAGAAATACACAAAGCAAGAAGATGAGGAGACAGAATGCAGTATTTGCTTGGAGTGCATTGAGAGAAGCCATGAAGTGAGGGAACAGTGCAACTGCAATCACTTGTTTCACGGGGAGTGTTTAGATGGTTGGTTGAATCAAGAGCAGGTGACCTGTCCTTTGTGCAGAGCTCTGCTGTTTCCGGCCACCAGCGAAAAGACGAGCTGCGGCGGAGGAAATGTATGGACAGTGGACAGGAATGCATACTTTGAATCTTTGATAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

185

Amino Acids

20.94

Weight (kDa)

5.89

Isoelectric Point (pI)

56.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	108 - 152	4.6e-10	Ring finger domain
zf-rbx1	PF12678	111 - 152	6.5e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015700)

Species	Orthologous Gene IDs
malus_domestica	MD06G1122600.v1.1 MD06G1122900.v1.1 MD06G1123000.v1.1 MD06G1123400.v1.1 MD14G1139500.v1.1 MD14G1139600.v1.1 MD14G1139700.v1.1
prunus_persica	Prupe.5G134100_v2.0.a1
pyrus_communis	pycom06g11420 pycom14g11530
rosa_chinensis	RchiOBHm_Chr7g0187721
rosa_multiflora	Rmu_sc0004483.1_g000026
rosa_roxburghii	Rroxscaffold_3G00267120
rosa_samantha	Rh7BG090700 Rh7CG089700 Rh7DG091200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	424
Acc36I	ACCTGC	1 cut(s)	424
AciI	CCGC	3 cut(s)	37, 495, 498
AclWI	GGATC	2 cut(s)	12, 223
AcoI	YGGCCR	1 cut(s)	471
AfiI	CCNNNNNNNGG	2 cut(s)	14, 36
AgsI	TTSAA	3 cut(s)	79, 424, 539
AjiI	CACGTC	1 cut(s)	235
AluBI	AGCT	2 cut(s)	458, 492
AluI	AGCT	2 cut(s)	458, 492
Alw21I	GWGCWC	1 cut(s)	460
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	2 cut(s)	12, 223
AoxI	GGCC	1 cut(s)	471
ApeKI	GCWGC	1 cut(s)	492
ArsI	GACNNNNNNTTYG	2 cut(s)	430, 462
AsuHPI	GGTGA	1 cut(s)	448
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	460
BauI	CACGAG	1 cut(s)	188
Bbv12I	GWGCWC	1 cut(s)	460
BbvI	GCAGC	1 cut(s)	479
BccI	CCATC	2 cut(s)	114, 407
BcoDI	GTCTC	1 cut(s)	311
BfaI	CTAG	3 cut(s)	59, 65, 110
BfuAI	ACCTGC	1 cut(s)	424
BglII	AGATCT	1 cut(s)	81
BisI	GCNGC	2 cut(s)	493, 496
BlsI	GCNGC	2 cut(s)	494, 497
BmgBI	CACGTC	1 cut(s)	235
BmiI	GGNNCC	2 cut(s)	6, 116
BsaJI	CCNNGG	1 cut(s)	147
BsaWI	WCCGGW	1 cut(s)	262
BsaXI	ACNNNNNCTCC	2 cut(s)	492, 522
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 36
Bse1I	ACTGG	1 cut(s)	208
Bse3DI	GCAATG	1 cut(s)	70
BseDI	CCNNGG	1 cut(s)	147
BseLI	CCNNNNNNNGG	2 cut(s)	14, 36
BseMI	GCAATG	1 cut(s)	70
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	208
BseRI	GAGGAG	1 cut(s)	329
BseXI	GCAGC	1 cut(s)	479
BsgI	GTGCAG	1 cut(s)	472
BshFI	GGCC	1 cut(s)	473
BsiHKAI	GWGCWC	1 cut(s)	460
BsiSI	CCGG	2 cut(s)	263, 470
BslI	CCNNNNNNNGG	2 cut(s)	14, 36
BsmAI	GTCTC	1 cut(s)	311
BsmI	GAATGC	2 cut(s)	329, 532
BsnI	GGCC	1 cut(s)	473
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp143I	GATC	3 cut(s)	4, 81, 228
Bsp19I	CCATGG	1 cut(s)	147
BspACI	CCGC	3 cut(s)	37, 495, 498
BspANI	GGCC	1 cut(s)	473
BspCNI	CTCAG	1 cut(s)	133
BspLI	GGNNCC	2 cut(s)	6, 116
BspMI	ACCTGC	1 cut(s)	424
BspPI	GGATC	2 cut(s)	12, 223
BsrDI	GCAATG	1 cut(s)	70
BsrI	ACTGG	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	3 cut(s)	4, 81, 228
BssSI	CACGAG	1 cut(s)	188
BssT1I	CCWWGG	1 cut(s)	147
Bst2BI	CACGAG	1 cut(s)	188
Bst4CI	ACNGT	3 cut(s)	179, 375, 517
BstAPI	GCANNNNNTGC	1 cut(s)	333
BstDEI	CTNAG	2 cut(s)	101, 141
BstDSI	CCRYGG	1 cut(s)	147
BstEII	GGTNACC	1 cut(s)	436
BstKTI	GATC	3 cut(s)	7, 84, 231
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	3 cut(s)	4, 81, 228
BstMWI	GCNNNNNNNGC	2 cut(s)	333, 342
BstPI	GGTNACC	1 cut(s)	436
BstV1I	GCAGC	1 cut(s)	479
BstX2I	RGATCY	2 cut(s)	4, 81
BstYI	RGATCY	2 cut(s)	4, 81
BsuRI	GGCC	1 cut(s)	473
BtgI	CCRYGG	1 cut(s)	147
BtrI	CACGTC	1 cut(s)	235
BtsI	GCAGTG	2 cut(s)	53, 128
BtsIMutI	CAGTG	4 cut(s)	53, 128, 380, 522
BveI	ACCTGC	1 cut(s)	424
CviAII	CATG	2 cut(s)	148, 359
CviJI	RGCY	7 cut(s)	105, 165, 259, 357, 458, 473, 492
CviKI_1	RGCY	7 cut(s)	105, 165, 259, 357, 458, 473, 492
DdeI	CTNAG	2 cut(s)	101, 141
DpnI	GATC	3 cut(s)	6, 83, 230
DpnII	GATC	3 cut(s)	4, 81, 228
EaeI	YGGCCR	1 cut(s)	471
EciI	GGCGGA	2 cut(s)	52, 513
Ecl136II	GAGCTC	1 cut(s)	458
Eco130I	CCWWGG	1 cut(s)	147
Eco24I	GRGCYC	1 cut(s)	460
Eco53kI	GAGCTC	1 cut(s)	458
Eco91I	GGTNACC	1 cut(s)	436
EcoICRI	GAGCTC	1 cut(s)	458
EcoO65I	GGTNACC	1 cut(s)	436
EcoT14I	CCWWGG	1 cut(s)	147
EcoT22I	ATGCAT	1 cut(s)	532
EcoT38I	GRGCYC	1 cut(s)	460
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	2 cut(s)	151, 362
FaiI	YATR	8 cut(s)	47, 149, 162, 183, 249, 360, 511, 532
FatI	CATG	2 cut(s)	147, 358
Fnu4HI	GCNGC	2 cut(s)	493, 496
FriOI	GRGCYC	1 cut(s)	460
Fsp4HI	GCNGC	2 cut(s)	493, 496
FspBI	CTAG	3 cut(s)	59, 65, 110
GluI	GCNGC	2 cut(s)	493, 496
HaeIII	GGCC	1 cut(s)	473
HapII	CCGG	2 cut(s)	263, 470
Hin1II	CATG	2 cut(s)	151, 362
HinfI	GANTC	3 cut(s)	143, 424, 539
HpaII	CCGG	2 cut(s)	263, 470
HphI	GGTGA	1 cut(s)	448
Hpy166II	GTNNAC	1 cut(s)	520
Hpy188I	TCNGA	1 cut(s)	228
Hpy188III	TCNNGA	5 cut(s)	79, 118, 253, 289, 428
Hpy8I	GTNNAC	1 cut(s)	520
HpyCH4III	ACNGT	3 cut(s)	179, 375, 517
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	8 cut(s)	70, 133, 327, 345, 378, 384, 453, 530
HpyF10VI	GCNNNNNNNGC	2 cut(s)	333, 342
HpyF3I	CTNAG	2 cut(s)	101, 141
HpySE526I	ACGT	1 cut(s)	234
Hsp92II	CATG	2 cut(s)	151, 362
Kzo9I	GATC	3 cut(s)	4, 81, 228
LpnPI	CCDG	8 cut(s)	131, 221, 276, 419, 454, 483, 490, 508
Lsp1109I	GCAGC	1 cut(s)	479
MaeI	CTAG	3 cut(s)	59, 65, 110
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	3 cut(s)	6, 83, 230
MboI	GATC	3 cut(s)	4, 81, 228
MboII	GAAGA	2 cut(s)	164, 320
MflI	RGATCY	2 cut(s)	4, 81
MhlI	GDGCHC	1 cut(s)	460
MlyI	GAGTC	1 cut(s)	152
MnlI	CCTC	7 cut(s)	20, 135, 210, 249, 307, 360, 494
Mph1103I	ATGCAT	1 cut(s)	532
MseI	TTAA	2 cut(s)	21, 239
MspI	CCGG	2 cut(s)	263, 470
Mva1269I	GAATGC	2 cut(s)	329, 532
MwoI	GCNNNNNNNGC	2 cut(s)	333, 342
NcoI	CCATGG	1 cut(s)	147
NdeII	GATC	3 cut(s)	4, 81, 228
NlaIII	CATG	2 cut(s)	151, 362
NlaIV	GGNNCC	2 cut(s)	6, 116
NmuCI	GTSAC	1 cut(s)	436
NsiI	ATGCAT	1 cut(s)	532
PaqCI	CACCTGC	1 cut(s)	424
PctI	GAATGC	2 cut(s)	329, 532
PfeI	GAWTC	2 cut(s)	424, 539
PflFI	GACNNNGTC	1 cut(s)	142
PkrI	GCNGC	2 cut(s)	494, 497
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
Psp124BI	GAGCTC	1 cut(s)	460
PspEI	GGTNACC	1 cut(s)	436
PspN4I	GGNNCC	2 cut(s)	6, 116
PsuI	RGATCY	2 cut(s)	4, 81
PsyI	GACNNNGTC	1 cut(s)	142
SacI	GAGCTC	1 cut(s)	460
SaqAI	TTAA	2 cut(s)	21, 239
SatI	GCNGC	2 cut(s)	493, 496
Sau3AI	GATC	3 cut(s)	4, 81, 228
SchI	GAGTC	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	460
SetI	ASST	7 cut(s)	127, 237, 438, 443, 460, 494, 553
SsiI	CCGC	3 cut(s)	37, 495, 498
SspMI	CTAG	3 cut(s)	59, 65, 110
SstI	GAGCTC	1 cut(s)	460
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	3 cut(s)	179, 375, 517
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	4 cut(s)	195, 212, 280, 288
TauI	GCSGC	1 cut(s)	498
TfiI	GAWTC	2 cut(s)	424, 539
Tru1I	TTAA	2 cut(s)	21, 239
Tru9I	TTAA	2 cut(s)	21, 239
TscAI	CASTG	4 cut(s)	60, 135, 380, 522
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	1 cut(s)	492
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	1 cut(s)	375
TspRI	CASTG	4 cut(s)	60, 135, 380, 522
Tth111I	GACNNNGTC	1 cut(s)	142
XspI	CTAG	3 cut(s)	59, 65, 110
Zsp2I	ATGCAT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.