Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0015700

Physical Location & Seq

Genomic Coordinates Reverse (-)

23005464 .. 23006045

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1139500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGAATTTCCCTGCGTTATTAGCATGTCCAAATTGCGCAAAAGCCTTGAAAAACTGCTAATCTTTACACGCTGCTTAAAGATCGTACTGATAGTAGCACTTAGCCATCTGGGACTGCTTAAACCTGCAGTAGAGATGAATGAGCCAACTGCCGACTCCATGGAGCACCACCAGCATTCGAATCCGAACAATTCGATACTGGCGCTCGATCCTGAGTGCCCGTCGATAGTCTCGGTCCCGATCCACGTTCTAACGGAATACATCAAGAGGCGGCTTCCGGTGGTAGAGTTTGGTCAAGTTTTCGAAAAATACACAAAGCTTGGAGATCAAGAAACAGCTTGTAGTATATGCTTGGAGTGCATAGAGAGGAGCCATGAGGTGAGGGAGCAGTGCAACTGTGACCATGTGTTTCACAGGAAGTGTCTGGATGGTTGGGTCAATCAGGGGCAGGTGACCTGCCCTTTGTGCCGAGCAATGCTGTTTCCAAGCAAGAGCGAAACAGTAAGCTGCGGCCGAGGAAATTTAGGGTGGCCGGAAGGGGATGACGCCTACTTCGGTAGGTTAGAATTCATTGTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

194

Amino Acids

21.89

Weight (kDa)

6.24

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	113 - 157	1.9e-09	Ring finger domain
zf-C3HC4	PF00097	114 - 156	3.3e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	115 - 157	1.1e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015700)

Species	Orthologous Gene IDs
malus_domestica	MD06G1122600.v1.1 MD06G1122900.v1.1 MD06G1123000.v1.1 MD06G1123400.v1.1 MD14G1139500.v1.1 MD14G1139600.v1.1 MD14G1139700.v1.1
prunus_persica	Prupe.5G134100_v2.0.a1
pyrus_communis	pycom06g11420 pycom14g11530
rosa_chinensis	RchiOBHm_Chr7g0187721
rosa_multiflora	Rmu_sc0004483.1_g000026
rosa_roxburghii	Rroxscaffold_3G00267120
rosa_samantha	Rh7BG090700 Rh7CG089700 Rh7DG091200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	439
Acc16I	TGCGCA	1 cut(s)	38
Acc36I	ACCTGC	3 cut(s)	133, 439, 464
AciI	CCGC	2 cut(s)	271, 510
AclWI	GGATC	2 cut(s)	203, 235
AcoI	YGGCCR	2 cut(s)	511, 530
AcsI	RAATTY	3 cut(s)	5, 520, 566
AcyI	GRCGYC	1 cut(s)	546
AfaI	GTAC	1 cut(s)	87
AgsI	TTSAA	1 cut(s)	50
AluBI	AGCT	3 cut(s)	319, 338, 507
AluI	AGCT	3 cut(s)	319, 338, 507
Alw21I	GWGCWC	1 cut(s)	168
Alw26I	GTCTC	1 cut(s)	235
AlwI	GGATC	2 cut(s)	203, 235
AoxI	GGCC	2 cut(s)	511, 530
ApeKI	GCWGC	2 cut(s)	72, 507
ApoI	RAATTY	3 cut(s)	5, 520, 566
ArsI	GACNNNNNNTTYG	4 cut(s)	445, 477, 536, 568
AspLEI	GCGC	2 cut(s)	39, 205
AspS9I	GGNCC	1 cut(s)	235
AsuHPI	GGTGA	2 cut(s)	391, 463
AsuII	TTCGAA	2 cut(s)	179, 303
AvaII	GGWCC	1 cut(s)	235
BaeGI	GKGCMC	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	168
BbvI	GCAGC	2 cut(s)	59, 494
BccI	CCATC	2 cut(s)	114, 422
BcoDI	GTCTC	1 cut(s)	235
BfmI	CTRYAG	1 cut(s)	126
BfoI	RGCGCY	1 cut(s)	206
BfuAI	ACCTGC	3 cut(s)	133, 439, 464
BisI	GCNGC	4 cut(s)	73, 272, 508, 511
BlsI	GCNGC	4 cut(s)	74, 273, 509, 512
Bme18I	GGWCC	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	235
BmiI	GGNNCC	2 cut(s)	237, 371
Bpu14I	TTCGAA	2 cut(s)	179, 303
BsaHI	GRCGYC	1 cut(s)	546
BsaJI	CCNNGG	2 cut(s)	159, 514
BsaWI	WCCGGW	1 cut(s)	277
Bse1I	ACTGG	1 cut(s)	204
Bse3DI	GCAATG	1 cut(s)	480
BseDI	CCNNGG	2 cut(s)	159, 514
BseGI	GGATG	2 cut(s)	433, 547
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	1 cut(s)	204
BseRI	GAGGAG	1 cut(s)	382
BseSI	GKGCMC	1 cut(s)	221
BseX3I	CGGCCG	1 cut(s)	511
BseXI	GCAGC	2 cut(s)	59, 494
Bsh1285I	CGRYCG	1 cut(s)	514
BshFI	GGCC	2 cut(s)	513, 532
BsiEI	CGRYCG	1 cut(s)	514
BsiHKAI	GWGCWC	1 cut(s)	168
BsiSI	CCGG	2 cut(s)	278, 533
BslFI	GGGAC	2 cut(s)	126, 221
BsmAI	GTCTC	1 cut(s)	235
BsmFI	GGGAC	2 cut(s)	126, 221
BsmI	GAATGC	1 cut(s)	175
BsnI	GGCC	2 cut(s)	513, 532
Bsp119I	TTCGAA	2 cut(s)	179, 303
Bsp1286I	GDGCHC	2 cut(s)	168, 221
Bsp143I	GATC	4 cut(s)	81, 208, 240, 325
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	2 cut(s)	271, 510
BspANI	GGCC	2 cut(s)	513, 532
BspCNI	CTCAG	1 cut(s)	205
BspLI	GGNNCC	2 cut(s)	237, 371
BspMAI	CTGCAG	1 cut(s)	130
BspMI	ACCTGC	3 cut(s)	133, 439, 464
BspPI	GGATC	2 cut(s)	203, 235
BspT104I	TTCGAA	2 cut(s)	179, 303
BsrDI	GCAATG	1 cut(s)	480
BsrI	ACTGG	1 cut(s)	204
BssECI	CCNNGG	2 cut(s)	159, 514
BssMI	GATC	4 cut(s)	81, 208, 240, 325
BssNI	GRCGYC	1 cut(s)	546
BssT1I	CCWWGG	1 cut(s)	159
Bst4CI	ACNGT	2 cut(s)	398, 502
BstACI	GRCGYC	1 cut(s)	546
BstBI	TTCGAA	2 cut(s)	179, 303
BstDEI	CTNAG	2 cut(s)	101, 213
BstDSI	CCRYGG	1 cut(s)	159
BstEII	GGTNACC	1 cut(s)	451
BstF5I	GGATG	2 cut(s)	433, 547
BstH2I	RGCGCY	1 cut(s)	206
BstHHI	GCGC	2 cut(s)	39, 205
BstKTI	GATC	4 cut(s)	84, 211, 243, 328
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	4 cut(s)	81, 208, 240, 325
BstMCI	CGRYCG	1 cut(s)	514
BstMWI	GCNNNNNNNGC	4 cut(s)	21, 172, 357, 465
BstNSI	RCATGY	1 cut(s)	28
BstPI	GGTNACC	1 cut(s)	451
BstSFI	CTRYAG	1 cut(s)	126
BstSLI	GKGCMC	1 cut(s)	221
BstV1I	GCAGC	2 cut(s)	59, 494
BstZI	CGGCCG	1 cut(s)	511
BsuRI	GGCC	2 cut(s)	513, 532
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	2 cut(s)	433, 547
BtsI	GCAGTG	1 cut(s)	395
BtsIMutI	CAGTG	1 cut(s)	395
BveI	ACCTGC	3 cut(s)	133, 439, 464
CfoI	GCGC	2 cut(s)	39, 205
Cfr13I	GGNCC	1 cut(s)	235
CseI	GACGC	1 cut(s)	554
Csp6I	GTAC	1 cut(s)	86
CviAII	CATG	4 cut(s)	25, 160, 374, 404
CviQI	GTAC	1 cut(s)	86
DdeI	CTNAG	2 cut(s)	101, 213
DpnI	GATC	4 cut(s)	83, 210, 242, 327
DpnII	GATC	4 cut(s)	81, 208, 240, 325
EaeI	YGGCCR	2 cut(s)	511, 530
EagI	CGGCCG	1 cut(s)	511
EclXI	CGGCCG	1 cut(s)	511
Eco130I	CCWWGG	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	235
Eco52I	CGGCCG	1 cut(s)	511
Eco91I	GGTNACC	1 cut(s)	451
EcoO65I	GGTNACC	1 cut(s)	451
EcoRI	GAATTC	1 cut(s)	566
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	4 cut(s)	28, 163, 377, 407
FaiI	YATR	7 cut(s)	26, 161, 347, 349, 362, 375, 405
FaqI	GGGAC	2 cut(s)	126, 221
FatI	CATG	4 cut(s)	24, 159, 373, 403
Fnu4HI	GCNGC	4 cut(s)	73, 272, 508, 511
FokI	GGATG	2 cut(s)	440, 554
Fsp4HI	GCNGC	4 cut(s)	73, 272, 508, 511
FspI	TGCGCA	1 cut(s)	38
GlaI	GCGC	2 cut(s)	38, 204
GluI	GCNGC	4 cut(s)	73, 272, 508, 511
HaeII	RGCGCY	1 cut(s)	206
HaeIII	GGCC	2 cut(s)	513, 532
HapII	CCGG	2 cut(s)	278, 533
HgaI	GACGC	1 cut(s)	554
HhaI	GCGC	2 cut(s)	39, 205
Hin1I	GRCGYC	1 cut(s)	546
Hin1II	CATG	4 cut(s)	28, 163, 377, 407
Hin6I	GCGC	2 cut(s)	37, 203
HinP1I	GCGC	2 cut(s)	37, 203
HindIII	AAGCTT	1 cut(s)	317
HinfI	GANTC	2 cut(s)	155, 181
HpaII	CCGG	2 cut(s)	278, 533
HphI	GGTGA	2 cut(s)	391, 463
Hpy188I	TCNGA	1 cut(s)	186
Hpy188III	TCNNGA	5 cut(s)	212, 238, 265, 329, 425
Hpy99I	CGWCG	1 cut(s)	226
HpyAV	CCTTC	1 cut(s)	530
HpyCH4III	ACNGT	2 cut(s)	398, 502
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	3 cut(s)	128, 360, 393
HpyF10VI	GCNNNNNNNGC	4 cut(s)	21, 172, 357, 465
HpyF3I	CTNAG	2 cut(s)	101, 213
HpySE526I	ACGT	1 cut(s)	246
Hsp92I	GRCGYC	1 cut(s)	546
Hsp92II	CATG	4 cut(s)	28, 163, 377, 407
HspAI	GCGC	2 cut(s)	37, 203
Kzo9I	GATC	4 cut(s)	81, 208, 240, 325
LmnI	GCTCC	3 cut(s)	163, 369, 385
Lsp1109I	GCAGC	2 cut(s)	59, 494
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	2 cut(s)	398, 451
MalI	GATC	4 cut(s)	83, 210, 242, 327
MboI	GATC	4 cut(s)	81, 208, 240, 325
MhlI	GDGCHC	2 cut(s)	168, 221
MluCI	AATT	5 cut(s)	5, 32, 190, 520, 566
MlyI	GAGTC	1 cut(s)	149
MnlI	CCTC	5 cut(s)	261, 360, 370, 375, 509
MseI	TTAA	2 cut(s)	77, 120
MspI	CCGG	2 cut(s)	278, 533
Mva1269I	GAATGC	1 cut(s)	175
MwoI	GCNNNNNNNGC	4 cut(s)	21, 172, 357, 465
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	4 cut(s)	81, 208, 240, 325
NlaIII	CATG	4 cut(s)	28, 163, 377, 407
NlaIV	GGNNCC	2 cut(s)	237, 371
NmeAIII	GCCGAG	2 cut(s)	494, 539
NmuCI	GTSAC	2 cut(s)	398, 451
NsbI	TGCGCA	1 cut(s)	38
NspI	RCATGY	1 cut(s)	28
NspV	TTCGAA	2 cut(s)	179, 303
PaqCI	CACCTGC	1 cut(s)	439
PctI	GAATGC	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	181
PkrI	GCNGC	4 cut(s)	74, 273, 509, 512
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
PspEI	GGTNACC	1 cut(s)	451
PspN4I	GGNNCC	2 cut(s)	237, 371
PspPI	GGNCC	1 cut(s)	235
PstI	CTGCAG	1 cut(s)	130
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
SaqAI	TTAA	2 cut(s)	77, 120
SatI	GCNGC	4 cut(s)	73, 272, 508, 511
Sau3AI	GATC	4 cut(s)	81, 208, 240, 325
Sau96I	GGNCC	1 cut(s)	235
SchI	GAGTC	1 cut(s)	149
SduI	GDGCHC	2 cut(s)	168, 221
SetI	ASST	9 cut(s)	127, 249, 321, 340, 381, 453, 458, 509, 563
SfcI	CTRYAG	1 cut(s)	126
SfuI	TTCGAA	2 cut(s)	179, 303
SinI	GGWCC	1 cut(s)	235
Sse9I	AATT	5 cut(s)	5, 32, 190, 520, 566
SsiI	CCGC	2 cut(s)	271, 510
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	2 cut(s)	398, 502
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	5 cut(s)	179, 194, 207, 224, 303
TaqII	GACCGA	1 cut(s)	223
TasI	AATT	5 cut(s)	5, 32, 190, 520, 566
TauI	GCSGC	2 cut(s)	274, 513
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	2 cut(s)	77, 120
Tru9I	TTAA	2 cut(s)	77, 120
TscAI	CASTG	1 cut(s)	395
TseFI	GTSAC	2 cut(s)	398, 451
TseI	GCWGC	2 cut(s)	72, 507
Tsp45I	GTSAC	2 cut(s)	398, 451
TspDTI	ATGAA	2 cut(s)	152, 559
TspGWI	ACGGA	1 cut(s)	269
TspRI	CASTG	1 cut(s)	395
VpaK11BI	GGWCC	1 cut(s)	235
XapI	RAATTY	3 cut(s)	5, 520, 566
XceI	RCATGY	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.