Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0002672

Physical Location & Seq

Genomic Coordinates Forward (+)

2568403 .. 2568723

Gene Structure 321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1035900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGTCGGAGATTTTCATACTGAAGAAGATTAACCACCCAAATATTATGCGGTTGCACAATATTATAGAGGTTCCTGGGAAGATAAATCTTGTTTTAGAGTATTGCATAGGTAGTGATCTTTCTATCTATATAGAACGCCATGGAAAAGTGCCCGAAGCTCTTGCAGAGCACTTCATGCAGCAGCTAGTCGCTGGTCTGCAAATGCTTCGTGACAACAATCTTATACATCAAGATCTCAAGCCACAGAATCTGTTGTTGTCCACCAATGACAACAATTCTGTCTTGAAGATTGTAGATCTTGGATTTACAAGATCCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0009405 GO:0009847 GO:0009987 GO:0012501 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044409 GO:0044419 GO:0048102 GO:0051701 GO:0051704 GO:0051828 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04139 ko04140 ko04150 ko04212 map04136 map04138 map04139 map04140 map04150 map04212

Pfam Domains

Protein Families

Pkinase

Protein Analysis

107

Amino Acids

12.11

Weight (kDa)

6.49

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 105	1.2e-16	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	2 - 105	1.5e-26	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37840 AT2G37840 AT2G37840 AT3G53930 AT3G53930 AT3G53930 AT3G53930 AT3G53930
fragaria_vesca	FvH4_6g12940 FvH4_6g12940 FvH4_6g12940 FvH4_6g12940 FvH4_6g12940
malus_domestica	MD04G1136900.v1.1 MD08G1035900.v1.1 MD12G1151100.v1.1
prunus_persica	Prupe.6G262900_v2.0.a1 Prupe.6G262900_v2.0.a1 Prupe.6G262900_v2.0.a1
pyrus_communis	pycom04g12420 pycom12g14500 pycom12g14540
rosa_chinensis	RchiOBHm_Chr3g0465041 RchiOBHm_Chr6g0290621
rosa_laevigata	RLG00000024660
rosa_multiflora	Rmu_sc0002119.1_g000016 Rmu_sc0003072.1_g000002 Rmu_sc0004362.1_g000019 Rmu_sc0006588.1_g000005
rosa_roxburghii	Rroxscaffold_6G00415320
rosa_rugosa	Rorug03G0074800 Rorug03G0074800
rosa_samantha	Rh3BG138400 Rh3CG140800 Rh3CG149100 Rh3DG139900 Rh4CG187800 Rh5CG080500
rosa_wichuraiana	Rw3G011320 Rw5G006690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	49
AclWI	GGATC	1 cut(s)	306
AcuI	CTGAAG	1 cut(s)	41
AgsI	TTSAA	1 cut(s)	286
AjnI	CCWGG	1 cut(s)	73
AluBI	AGCT	2 cut(s)	158, 184
AluI	AGCT	2 cut(s)	158, 184
Alw21I	GWGCWC	1 cut(s)	171
AlwI	GGATC	1 cut(s)	306
AlwNI	CAGNNNCTG	1 cut(s)	250
ApeKI	GCWGC	2 cut(s)	178, 181
BaeGI	GKGCMC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	2 cut(s)	190, 193
BcgI	CGANNNNNNTGC	4 cut(s)	143, 177, 188, 222
BciT130I	CCWGG	1 cut(s)	75
BfaI	CTAG	1 cut(s)	185
BglII	AGATCT	2 cut(s)	232, 295
BisI	GCNGC	2 cut(s)	179, 182
BlsI	GCNGC	2 cut(s)	180, 183
Bme1390I	CCNGG	1 cut(s)	75
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	221
BsaJI	CCNNGG	2 cut(s)	74, 139
BseBI	CCWGG	1 cut(s)	75
BseDI	CCNNGG	2 cut(s)	74, 139
BseSI	GKGCMC	1 cut(s)	153
BseXI	GCAGC	2 cut(s)	190, 193
BsiHKAI	GWGCWC	1 cut(s)	171
Bsp1286I	GDGCHC	2 cut(s)	153, 171
Bsp143I	GATC	4 cut(s)	115, 232, 295, 311
Bsp19I	CCATGG	1 cut(s)	139
BspACI	CCGC	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	72
BspPI	GGATC	1 cut(s)	306
BssECI	CCNNGG	2 cut(s)	74, 139
BssMI	GATC	4 cut(s)	115, 232, 295, 311
BssT1I	CCWWGG	1 cut(s)	139
Bst2UI	CCWGG	1 cut(s)	75
BstAPI	GCANNNNNTGC	1 cut(s)	175
BstDSI	CCRYGG	1 cut(s)	139
BstKTI	GATC	4 cut(s)	118, 235, 298, 314
BstMBI	GATC	4 cut(s)	115, 232, 295, 311
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstNI	CCWGG	1 cut(s)	75
BstSCI	CCNGG	1 cut(s)	73
BstSLI	GKGCMC	1 cut(s)	153
BstV1I	GCAGC	2 cut(s)	190, 193
BstX2I	RGATCY	3 cut(s)	232, 295, 311
BstYI	RGATCY	3 cut(s)	232, 295, 311
BtgI	CCRYGG	1 cut(s)	139
CaiI	CAGNNNCTG	1 cut(s)	250
CviAII	CATG	2 cut(s)	140, 175
CviJI	RGCY	3 cut(s)	158, 184, 241
CviKI_1	RGCY	3 cut(s)	158, 184, 241
DpnI	GATC	4 cut(s)	117, 234, 297, 313
DpnII	GATC	4 cut(s)	115, 232, 295, 311
Eco130I	CCWWGG	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	139
FaeI	CATG	2 cut(s)	143, 178
FaiI	YATR	9 cut(s)	17, 47, 65, 107, 129, 131, 141, 176, 224
FatI	CATG	2 cut(s)	139, 174
Fnu4HI	GCNGC	2 cut(s)	179, 182
Fsp4HI	GCNGC	2 cut(s)	179, 182
FspBI	CTAG	1 cut(s)	185
GluI	GCNGC	2 cut(s)	179, 182
Hin1II	CATG	2 cut(s)	143, 178
HinfI	GANTC	1 cut(s)	247
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188I	TCNGA	1 cut(s)	7
Hpy188III	TCNNGA	3 cut(s)	209, 230, 283
Hpy8I	GTNNAC	1 cut(s)	261
HpyCH4V	TGCA	5 cut(s)	55, 105, 164, 178, 199
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
Hsp92II	CATG	2 cut(s)	143, 178
Kzo9I	GATC	4 cut(s)	115, 232, 295, 311
LpnPI	CCDG	3 cut(s)	60, 87, 177
Lsp1109I	GCAGC	2 cut(s)	190, 193
MaeI	CTAG	1 cut(s)	185
MaeIII	GTNAC	1 cut(s)	209
MalI	GATC	4 cut(s)	117, 234, 297, 313
MboI	GATC	4 cut(s)	115, 232, 295, 311
MboII	GAAGA	4 cut(s)	34, 37, 91, 298
MflI	RGATCY	3 cut(s)	232, 295, 311
MhlI	GDGCHC	2 cut(s)	153, 171
MluCI	AATT	1 cut(s)	274
MnlI	CCTC	1 cut(s)	61
MseI	TTAA	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	175
NcoI	CCATGG	1 cut(s)	139
NdeII	GATC	4 cut(s)	115, 232, 295, 311
NlaIII	CATG	2 cut(s)	143, 178
NlaIV	GGNNCC	1 cut(s)	72
NmuCI	GTSAC	1 cut(s)	209
PfeI	GAWTC	1 cut(s)	247
PkrI	GCNGC	2 cut(s)	180, 183
Psp6I	CCWGG	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	72
PstNI	CAGNNNCTG	1 cut(s)	250
PsuI	RGATCY	3 cut(s)	232, 295, 311
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	2 cut(s)	179, 182
Sau3AI	GATC	4 cut(s)	115, 232, 295, 311
ScrFI	CCNGG	1 cut(s)	75
SduI	GDGCHC	2 cut(s)	153, 171
SetI	ASST	4 cut(s)	72, 112, 160, 186
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	1 cut(s)	274
SsiI	CCGC	1 cut(s)	49
SspI	AATATT	2 cut(s)	43, 61
SspMI	CTAG	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	73
StyI	CCWWGG	1 cut(s)	139
TasI	AATT	1 cut(s)	274
TfiI	GAWTC	1 cut(s)	247
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	2 cut(s)	178, 181
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	2 cut(s)	4, 163
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.