Rh5CG080500

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002672
Physical Location & Seq
Reverse (-)
6179963 .. 6181327
1365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG080500.1

Sequence Viewer

Length: 321 bp
ATGGATAGTCTCGGCGGCCCATCAAACACCAACAAGTCCCGGTTGATCGGAGACTACATACTGGGCCCGAAAGTTGGGTCGGGCTCGTTGGCGGTCGTCTGGCGCTCGACCCATCGCCAACTGGGTATTGAAGTTGCGGTGAAGGAGATTGACAAGAAACACTTGAGCCCAAAAGTCAGCGAGAGTTTATTTAAGGAAATTTCGATTCTTAGCACCATAAAACCATCCCAATATTATTCACCTTTTTTAGGCCATCCAGCTCAAAGAGAGAAGATAAGTGAAGCTAATCAAGGTATGCTTTGGATCTACATATGTGATTAA

Protein Analysis

106

Amino Acids

11.74

Weight (kDa)

9.1

Isoelectric Point (pI)

50.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 21 - 74 2.5e-06 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 15, 92, 137
AclWI GGATC 1 cut(s) 311
AcsI RAATTY 1 cut(s) 198
AfiI CCNNNNNNNGG 2 cut(s) 74, 248
AgsI TTSAA 1 cut(s) 131
AluBI AGCT 2 cut(s) 260, 284
AluI AGCT 2 cut(s) 260, 284
Alw26I GTCTC 2 cut(s) 14, 45
AlwI GGATC 1 cut(s) 311
AoxI GGCC 3 cut(s) 16, 64, 250
ApaI GGGCCC 1 cut(s) 68
ApoI RAATTY 1 cut(s) 198
ArsI GACNNNNNNTTYG 2 cut(s) 62, 94
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 3 cut(s) 17, 64, 65
AsuC2I CCSGG 1 cut(s) 40
AsuHPI GGTGA 2 cut(s) 151, 231
BaeGI GKGCMC 1 cut(s) 68
BanII GRGCYC 3 cut(s) 68, 86, 170
BccI CCATC 4 cut(s) 28, 120, 232, 261
BcnI CCSGG 1 cut(s) 40
BcoDI GTCTC 2 cut(s) 14, 45
BfoI RGCGCY 1 cut(s) 106
BisI GCNGC 1 cut(s) 16
BlsI GCNGC 1 cut(s) 17
Bme1390I CCNGG 1 cut(s) 40
BmgT120I GGNCC 3 cut(s) 17, 64, 65
BmiI GGNNCC 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 40
BmrI ACTGGG 2 cut(s) 71, 131
BmuI ACTGGG 2 cut(s) 71, 131
BpuEI CTTGAG 1 cut(s) 184
BpuMI CCSGG 1 cut(s) 40
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 248
Bse1I ACTGG 2 cut(s) 66, 126
BseGI GGATG 2 cut(s) 224, 253
BseLI CCNNNNNNNGG 2 cut(s) 74, 248
BseNI ACTGG 2 cut(s) 66, 126
BseSI GKGCMC 1 cut(s) 68
Bsh1285I CGRYCG 1 cut(s) 96
BshFI GGCC 3 cut(s) 18, 66, 252
BsiEI CGRYCG 1 cut(s) 96
BsiSI CCGG 1 cut(s) 40
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 2 cut(s) 74, 248
BsmAI GTCTC 2 cut(s) 14, 45
BsmFI GGGAC 1 cut(s) 22
BsnI GGCC 3 cut(s) 18, 66, 252
Bsp120I GGGCCC 1 cut(s) 64
Bsp1286I GDGCHC 3 cut(s) 68, 86, 170
Bsp143I GATC 2 cut(s) 45, 303
BspACI CCGC 3 cut(s) 15, 92, 137
BspANI GGCC 3 cut(s) 18, 66, 252
BspLI GGNNCC 1 cut(s) 66
BspPI GGATC 1 cut(s) 311
BsrI ACTGG 2 cut(s) 66, 126
BssMI GATC 2 cut(s) 45, 303
BstDEI CTNAG 1 cut(s) 209
BstENI CCTNNNNNAGG 1 cut(s) 246
BstF5I GGATG 2 cut(s) 224, 253
BstH2I RGCGCY 1 cut(s) 106
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 2 cut(s) 48, 306
BstMAI GTCTC 2 cut(s) 14, 45
BstMBI GATC 2 cut(s) 45, 303
BstMCI CGRYCG 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 38
BstSLI GKGCMC 1 cut(s) 68
BstX2I RGATCY 1 cut(s) 303
BstYI RGATCY 1 cut(s) 303
BsuRI GGCC 3 cut(s) 18, 66, 252
BtgZI GCGATG 1 cut(s) 98
BtsCI GGATG 2 cut(s) 224, 253
CfoI GCGC 1 cut(s) 105
Cfr13I GGNCC 3 cut(s) 17, 64, 65
CviJI RGCY 7 cut(s) 18, 66, 84, 168, 252, 260, 284
CviKI_1 RGCY 7 cut(s) 18, 66, 84, 168, 252, 260, 284
DdeI CTNAG 1 cut(s) 209
DpnI GATC 2 cut(s) 47, 305
DpnII GATC 2 cut(s) 45, 303
Eco24I GRGCYC 3 cut(s) 68, 86, 170
EcoNI CCTNNNNNAGG 1 cut(s) 246
EcoT38I GRGCYC 3 cut(s) 68, 86, 170
FaiI YATR 5 cut(s) 59, 218, 296, 311, 313
FalI AAGNNNNNCTT 4 cut(s) 146, 178, 282, 314
FaqI GGGAC 1 cut(s) 22
FauNDI CATATG 1 cut(s) 311
Fnu4HI GCNGC 1 cut(s) 16
FokI GGATG 2 cut(s) 211, 240
FriOI GRGCYC 3 cut(s) 68, 86, 170
Fsp4HI GCNGC 1 cut(s) 16
GlaI GCGC 1 cut(s) 104
GluI GCNGC 1 cut(s) 16
HaeII RGCGCY 1 cut(s) 106
HaeIII GGCC 3 cut(s) 18, 66, 252
HapII CCGG 1 cut(s) 40
HhaI GCGC 1 cut(s) 105
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HinfI GANTC 1 cut(s) 205
HpaII CCGG 1 cut(s) 40
HphI GGTGA 2 cut(s) 151, 231
Hpy188I TCNGA 1 cut(s) 50
HpyAV CCTTC 1 cut(s) 136
HpyF3I CTNAG 1 cut(s) 209
HspAI GCGC 1 cut(s) 103
Kzo9I GATC 2 cut(s) 45, 303
LpnPI CCDG 5 cut(s) 47, 53, 85, 107, 270
MalI GATC 2 cut(s) 47, 305
MboI GATC 2 cut(s) 45, 303
MboII GAAGA 1 cut(s) 283
MflI RGATCY 1 cut(s) 303
MhlI GDGCHC 3 cut(s) 68, 86, 170
MluCI AATT 1 cut(s) 198
MseI TTAA 2 cut(s) 192, 319
MspI CCGG 1 cut(s) 40
MspR9I CCNGG 1 cut(s) 40
NciI CCSGG 1 cut(s) 40
NdeI CATATG 1 cut(s) 311
NdeII GATC 2 cut(s) 45, 303
NlaIV GGNNCC 1 cut(s) 66
PfeI GAWTC 1 cut(s) 205
PkrI GCNGC 1 cut(s) 17
PspN4I GGNNCC 1 cut(s) 66
PspOMI GGGCCC 1 cut(s) 64
PspPI GGNCC 3 cut(s) 17, 64, 65
PsuI RGATCY 1 cut(s) 303
SaqAI TTAA 2 cut(s) 192, 319
SatI GCNGC 1 cut(s) 16
Sau3AI GATC 2 cut(s) 45, 303
Sau96I GGNCC 3 cut(s) 17, 64, 65
ScrFI CCNGG 1 cut(s) 40
SduI GDGCHC 3 cut(s) 68, 86, 170
SetI ASST 4 cut(s) 244, 262, 286, 295
SmlI CTYRAG 1 cut(s) 163
SmoI CTYRAG 1 cut(s) 163
Sse9I AATT 1 cut(s) 198
SsiI CCGC 3 cut(s) 15, 92, 137
SspI AATATT 1 cut(s) 233
StyD4I CCNGG 1 cut(s) 38
TaqI TCGA 2 cut(s) 107, 203
TasI AATT 1 cut(s) 198
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 2 cut(s) 192, 319
Tru9I TTAA 2 cut(s) 192, 319
XagI CCTNNNNNAGG 1 cut(s) 246
XapI RAATTY 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.