Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003072.1

Orthogroup ID

OG0002672

Physical Location & Seq

Genomic Coordinates Forward (+)

10370 .. 12262

Gene Structure 1893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003072.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atgggcagaaactggcagagaagcggttaccgaccgaaccgcaccggaaaatccggttcggtaaccgaaccggttcaaaacgacgtcgtttttgaagaaaaccgcaccgaaccgcttacatgcggtgcgggttcgcagcttggtgcaagcatcttcaagcattgccgcagtcggcgcttctcactagggtgtcgacccttctgtcacggccagaagcccatcaccggtaactcgaccaaggaaagaatttaccttgtgctggagtactgtgatggtggtgacttggcggcttatatacagcgccatgggaaagtttcagaaactgtggccaggcacttcatgaggcaattgggtattgtgtgctatgctccgttttcaaatttccaggttttgttgcatgttttagtatgcggttttgggtgcaaaccgcaccgcaccgcaccgataaaacggtgcaaccgaaaatgcagtccaaaccattttaaagcggttgcggttcgtaaaataggcctaccgaataatgcggtgtggttgcggtttcgggcccaaaccgacccgaaccgcaccgcgcccagccctacccttcatcacgtggtgcactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005776 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0061919

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04139 ko04140 ko04150 ko04212 map04136 map04138 map04139 map04140 map04150 map04212

Pfam Domains

Protein Families

Pkinase

Protein Analysis

200

Amino Acids

22.48

Weight (kDa)

10.11

Isoelectric Point (pI)

37.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37840 AT2G37840 AT2G37840 AT3G53930 AT3G53930 AT3G53930 AT3G53930 AT3G53930
fragaria_vesca	FvH4_6g12940 FvH4_6g12940 FvH4_6g12940 FvH4_6g12940 FvH4_6g12940
malus_domestica	MD04G1136900.v1.1 MD08G1035900.v1.1 MD12G1151100.v1.1
prunus_persica	Prupe.6G262900_v2.0.a1 Prupe.6G262900_v2.0.a1 Prupe.6G262900_v2.0.a1
pyrus_communis	pycom04g12420 pycom12g14500 pycom12g14540
rosa_chinensis	RchiOBHm_Chr3g0465041 RchiOBHm_Chr6g0290621
rosa_laevigata	RLG00000024660
rosa_multiflora	Rmu_sc0002119.1_g000016 Rmu_sc0003072.1_g000002 Rmu_sc0004362.1_g000019 Rmu_sc0006588.1_g000005
rosa_roxburghii	Rroxscaffold_6G00415320
rosa_rugosa	Rorug03G0074800 Rorug03G0074800
rosa_samantha	Rh3BG138400 Rh3CG140800 Rh3CG149100 Rh3DG139900 Rh4CG187800 Rh5CG080500
rosa_wichuraiana	Rw3G011320 Rw5G006690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	201
AatII	GACGTC	1 cut(s)	87
AccI	GTMKAC	1 cut(s)	193
AccII	CGCG	1 cut(s)	569
AcoI	YGGCCR	2 cut(s)	208, 327
AcsI	RAATTY	2 cut(s)	246, 379
AcvI	CACGTG	1 cut(s)	592
AcyI	GRCGYC	1 cut(s)	84
AdeI	CACNNNGTG	1 cut(s)	595
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	2 cut(s)	224, 259
AgeI	ACCGGT	2 cut(s)	70, 224
AgsI	TTSAA	4 cut(s)	77, 95, 157, 378
AjnI	CCWGG	2 cut(s)	329, 384
AleI	CACNNNNGTG	1 cut(s)	187
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
Alw21I	GWGCWC	1 cut(s)	600
Alw44I	GTGCAC	1 cut(s)	596
AlwNI	CAGNNNCTG	2 cut(s)	12, 323
AoxI	GGCC	4 cut(s)	208, 327, 508, 543
ApaI	GGGCCC	1 cut(s)	547
ApaLI	GTGCAC	1 cut(s)	596
ApeKI	GCWGC	1 cut(s)	136
ApoI	RAATTY	2 cut(s)	246, 379
ArsI	GACNNNNNNTTYG	4 cut(s)	74, 106, 454, 486
AsiGI	ACCGGT	2 cut(s)	70, 224
Asp700I	GAANNNNTTC	1 cut(s)	72
AspLEI	GCGC	3 cut(s)	177, 303, 571
AspS9I	GGNCC	2 cut(s)	543, 544
AsuHPI	GGTGA	2 cut(s)	214, 290
BaeGI	GKGCMC	2 cut(s)	547, 600
BalI	TGGCCA	1 cut(s)	329
BanII	GRGCYC	1 cut(s)	547
BbrPI	CACGTG	1 cut(s)	592
Bbv12I	GWGCWC	1 cut(s)	600
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	2 cut(s)	227, 266
BceAI	ACGGC	1 cut(s)	223
BciT130I	CCWGG	2 cut(s)	331, 386
BfaI	CTAG	2 cut(s)	185, 601
BfoI	RGCGCY	2 cut(s)	178, 304
BisI	GCNGC	3 cut(s)	137, 166, 288
BlsI	GCNGC	3 cut(s)	138, 167, 289
BmcAI	AGTACT	1 cut(s)	266
Bme1390I	CCNGG	2 cut(s)	331, 386
BmgT120I	GGNCC	2 cut(s)	543, 544
BmiI	GGNNCC	1 cut(s)	545
BmrFI	CCNGG	2 cut(s)	331, 386
BmsI	GCATC	1 cut(s)	159
BpmI	CTGGAG	1 cut(s)	281
BsaAI	YACGTR	1 cut(s)	592
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	2 cut(s)	237, 304
BsaWI	WCCGGW	4 cut(s)	44, 53, 70, 224
Bsc4I	CCNNNNNNNGG	2 cut(s)	224, 259
Bse118I	RCCGGY	2 cut(s)	70, 224
Bse1I	ACTGG	1 cut(s)	17
Bse3DI	GCAATG	1 cut(s)	160
BseBI	CCWGG	2 cut(s)	331, 386
BseDI	CCNNGG	2 cut(s)	237, 304
BseLI	CCNNNNNNNGG	2 cut(s)	224, 259
BseMI	GCAATG	1 cut(s)	160
BseNI	ACTGG	1 cut(s)	17
BseSI	GKGCMC	2 cut(s)	547, 600
BseXI	GCAGC	1 cut(s)	148
BseYI	CCCAGC	1 cut(s)	572
Bsh1236I	CGCG	1 cut(s)	569
Bsh1285I	CGRYCG	1 cut(s)	35
BshFI	GGCC	4 cut(s)	210, 329, 510, 545
BshTI	ACCGGT	2 cut(s)	70, 224
BsiEI	CGRYCG	1 cut(s)	35
BsiHKAI	GWGCWC	1 cut(s)	600
BsiSI	CCGG	4 cut(s)	45, 54, 71, 225
BslI	CCNNNNNNNGG	2 cut(s)	224, 259
BsnI	GGCC	4 cut(s)	210, 329, 510, 545
Bsp120I	GGGCCC	1 cut(s)	543
Bsp1286I	GDGCHC	2 cut(s)	547, 600
Bsp19I	CCATGG	1 cut(s)	304
BspANI	GGCC	4 cut(s)	210, 329, 510, 545
BspFNI	CGCG	1 cut(s)	569
BspHI	TCATGA	1 cut(s)	339
BspLI	GGNNCC	1 cut(s)	545
BsrDI	GCAATG	1 cut(s)	160
BsrFI	RCCGGY	2 cut(s)	70, 224
BsrI	ACTGG	1 cut(s)	17
BssAI	RCCGGY	2 cut(s)	70, 224
BssECI	CCNNGG	2 cut(s)	237, 304
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	2 cut(s)	237, 304
Bst2UI	CCWGG	2 cut(s)	331, 386
Bst4CI	ACNGT	3 cut(s)	269, 325, 453
BstACI	GRCGYC	1 cut(s)	84
BstBAI	YACGTR	1 cut(s)	592
BstC8I	GCNNGC	1 cut(s)	148
BstDSI	CCRYGG	1 cut(s)	304
BstEII	GGTNACC	2 cut(s)	26, 61
BstFNI	CGCG	1 cut(s)	569
BstH2I	RGCGCY	2 cut(s)	178, 304
BstHHI	GCGC	3 cut(s)	177, 303, 571
BstMCI	CGRYCG	1 cut(s)	35
BstMWI	GCNNNNNNNGC	1 cut(s)	174
BstNI	CCWGG	2 cut(s)	331, 386
BstNSI	RCATGY	2 cut(s)	123, 401
BstPI	GGTNACC	2 cut(s)	26, 61
BstSCI	CCNGG	2 cut(s)	329, 384
BstSLI	GKGCMC	2 cut(s)	547, 600
BstUI	CGCG	1 cut(s)	569
BstV1I	GCAGC	1 cut(s)	148
BsuRI	GGCC	4 cut(s)	210, 329, 510, 545
BtgI	CCRYGG	1 cut(s)	304
Cac8I	GCNNGC	1 cut(s)	148
CaiI	CAGNNNCTG	2 cut(s)	12, 323
CciI	TCATGA	1 cut(s)	339
CfoI	GCGC	3 cut(s)	177, 303, 571
Cfr10I	RCCGGY	2 cut(s)	70, 224
Cfr13I	GGNCC	2 cut(s)	543, 544
Csp6I	GTAC	1 cut(s)	265
CspAI	ACCGGT	2 cut(s)	70, 224
CviAII	CATG	4 cut(s)	120, 305, 340, 398
CviJI	RGCY	8 cut(s)	139, 210, 217, 290, 329, 510, 545, 576
CviKI_1	RGCY	8 cut(s)	139, 210, 217, 290, 329, 510, 545, 576
CviQI	GTAC	1 cut(s)	265
DraI	TTTAAA	1 cut(s)	484
DraIII	CACNNNGTG	1 cut(s)	595
DrdI	GACNNNNNNGTC	1 cut(s)	201
DseDI	GACNNNNNNGTC	1 cut(s)	201
EaeI	YGGCCR	2 cut(s)	208, 327
Eco130I	CCWWGG	2 cut(s)	237, 304
Eco147I	AGGCCT	1 cut(s)	510
Eco24I	GRGCYC	1 cut(s)	547
Eco72I	CACGTG	1 cut(s)	592
Eco91I	GGTNACC	2 cut(s)	26, 61
EcoO65I	GGTNACC	2 cut(s)	26, 61
EcoRII	CCWGG	2 cut(s)	329, 384
EcoT14I	CCWWGG	2 cut(s)	237, 304
EcoT38I	GRGCYC	1 cut(s)	547
ErhI	CCWWGG	2 cut(s)	237, 304
FaeI	CATG	4 cut(s)	123, 308, 343, 401
FaiI	YATR	8 cut(s)	121, 294, 296, 306, 341, 366, 399, 409
FatI	CATG	4 cut(s)	119, 304, 339, 397
FauI	CCCGC	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	193
Fnu4HI	GCNGC	3 cut(s)	137, 166, 288
FriOI	GRGCYC	1 cut(s)	547
Fsp4HI	GCNGC	3 cut(s)	137, 166, 288
FspBI	CTAG	2 cut(s)	185, 601
GlaI	GCGC	3 cut(s)	176, 302, 570
GluI	GCNGC	3 cut(s)	137, 166, 288
GsaI	CCCAGC	1 cut(s)	576
GsuI	CTGGAG	1 cut(s)	281
HaeII	RGCGCY	2 cut(s)	178, 304
HaeIII	GGCC	4 cut(s)	210, 329, 510, 545
HapII	CCGG	4 cut(s)	45, 54, 71, 225
HhaI	GCGC	3 cut(s)	177, 303, 571
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	4 cut(s)	123, 308, 343, 401
Hin6I	GCGC	3 cut(s)	175, 301, 569
HinP1I	GCGC	3 cut(s)	175, 301, 569
HincII	GTYRAC	1 cut(s)	194
HindII	GTYRAC	1 cut(s)	194
HpaII	CCGG	4 cut(s)	45, 54, 71, 225
HphI	GGTGA	2 cut(s)	214, 290
Hpy166II	GTNNAC	2 cut(s)	194, 598
Hpy188I	TCNGA	1 cut(s)	319
Hpy188III	TCNNGA	1 cut(s)	340
Hpy8I	GTNNAC	2 cut(s)	194, 598
Hpy99I	CGWCG	2 cut(s)	86, 89
HpyAV	CCTTC	2 cut(s)	208, 593
HpyCH4III	ACNGT	3 cut(s)	269, 325, 453
HpyCH4IV	ACGT	2 cut(s)	84, 591
HpyCH4V	TGCA	6 cut(s)	146, 397, 423, 456, 468, 598
HpyF10VI	GCNNNNNNNGC	1 cut(s)	174
HpySE526I	ACGT	2 cut(s)	84, 591
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	4 cut(s)	123, 308, 343, 401
HspAI	GCGC	3 cut(s)	175, 301, 569
LmnI	GCTCC	1 cut(s)	373
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	1 cut(s)	159
MaeI	CTAG	2 cut(s)	185, 601
MaeII	ACGT	2 cut(s)	84, 591
MaeIII	GTNAC	5 cut(s)	26, 61, 203, 227, 278
MboII	GAAGA	2 cut(s)	107, 145
MfeI	CAATTG	1 cut(s)	347
MhlI	GDGCHC	2 cut(s)	547, 600
MlsI	TGGCCA	1 cut(s)	329
MluCI	AATT	3 cut(s)	246, 347, 379
MluNI	TGGCCA	1 cut(s)	329
MnlI	CCTC	1 cut(s)	336
Mox20I	TGGCCA	1 cut(s)	329
MroXI	GAANNNNTTC	1 cut(s)	72
MscI	TGGCCA	1 cut(s)	329
MseI	TTAA	1 cut(s)	483
MslI	CAYNNNNRTG	1 cut(s)	187
Msp20I	TGGCCA	1 cut(s)	329
MspI	CCGG	4 cut(s)	45, 54, 71, 225
MspR9I	CCNGG	2 cut(s)	331, 386
MunI	CAATTG	1 cut(s)	347
MvaI	CCWGG	2 cut(s)	331, 386
MvnI	CGCG	1 cut(s)	569
MwoI	GCNNNNNNNGC	1 cut(s)	174
NcoI	CCATGG	1 cut(s)	304
NlaIII	CATG	4 cut(s)	123, 308, 343, 401
NlaIV	GGNNCC	1 cut(s)	545
NmuCI	GTSAC	2 cut(s)	203, 278
NspI	RCATGY	2 cut(s)	123, 401
OliI	CACNNNNGTG	1 cut(s)	187
PagI	TCATGA	1 cut(s)	339
PceI	AGGCCT	1 cut(s)	510
PcsI	WCGNNNNNNNCGW	1 cut(s)	457
PdmI	GAANNNNTTC	1 cut(s)	72
PinAI	ACCGGT	2 cut(s)	70, 224
PkrI	GCNGC	3 cut(s)	138, 167, 289
PmaCI	CACGTG	1 cut(s)	592
PmlI	CACGTG	1 cut(s)	592
Ppu21I	YACGTR	1 cut(s)	592
Psp6I	CCWGG	2 cut(s)	329, 384
PspCI	CACGTG	1 cut(s)	592
PspEI	GGTNACC	2 cut(s)	26, 61
PspFI	CCCAGC	1 cut(s)	572
PspGI	CCWGG	2 cut(s)	329, 384
PspN4I	GGNNCC	1 cut(s)	545
PspOMI	GGGCCC	1 cut(s)	543
PspPI	GGNCC	2 cut(s)	543, 544
PstNI	CAGNNNCTG	2 cut(s)	12, 323
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
RseI	CAYNNNNRTG	1 cut(s)	187
SalI	GTCGAC	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	3 cut(s)	137, 166, 288
Sau96I	GGNCC	2 cut(s)	543, 544
ScaI	AGTACT	1 cut(s)	266
ScrFI	CCNGG	2 cut(s)	331, 386
SduI	GDGCHC	2 cut(s)	547, 600
SetI	ASST	5 cut(s)	87, 141, 255, 390, 594
SfaNI	GCATC	1 cut(s)	159
SmiMI	CAYNNNNRTG	1 cut(s)	187
Sse9I	AATT	3 cut(s)	246, 347, 379
SseBI	AGGCCT	1 cut(s)	510
SspMI	CTAG	2 cut(s)	185, 601
StuI	AGGCCT	1 cut(s)	510
StyD4I	CCNGG	2 cut(s)	329, 384
StyI	CCWWGG	2 cut(s)	237, 304
TaaI	ACNGT	3 cut(s)	269, 325, 453
TaiI	ACGT	2 cut(s)	87, 594
TaqI	TCGA	2 cut(s)	193, 233
TaqII	GACCGA	1 cut(s)	49
TasI	AATT	3 cut(s)	246, 347, 379
TatI	WGTACW	1 cut(s)	264
TauI	GCSGC	2 cut(s)	168, 290
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TseFI	GTSAC	2 cut(s)	203, 278
TseI	GCWGC	1 cut(s)	136
Tsp45I	GTSAC	2 cut(s)	203, 278
TspDTI	ATGAA	2 cut(s)	328, 575
TspGWI	ACGGA	1 cut(s)	360
VneI	GTGCAC	1 cut(s)	596
XapI	RAATTY	2 cut(s)	246, 379
XceI	RCATGY	2 cut(s)	123, 401
XmiI	GTMKAC	1 cut(s)	193
XmnI	GAANNNNTTC	1 cut(s)	72
XspI	CTAG	2 cut(s)	185, 601
ZraI	GACGTC	1 cut(s)	85
ZrmI	AGTACT	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.