Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002672

Physical Location & Seq

Genomic Coordinates Reverse (-)

40574189 .. 40581569

Gene Structure 7381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG187800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGATAGTCTCGGCGGCCCATCAAACACCAACAAGTCCCGGTTGATCGAAGACTACATACTGGGCCCGAAAGTTGGGTCGGGCTCGTTCGTCGTCGTCTGGCGCTCGACCCATCGCCAACTGGGTATTGAAGTTGCGGTGAAGGAGATTGGCAAGAAACACTTGAGCCCAAAAACCAAGGAAAGAATTTACCTCGTGCTGGAGTACTGTGATGGTGGTGACTTGGCGGCTTATATACAGCGCCATGGGAAAGTTTCAGAAACTGTGGCCAGGCACTTCATGAGGCAATTGGCTGCAGGATTGCAAGTGCTTCAGGAAAAGCACCTCATCCACCGGGATTTAAAACCACAGTGCGAGCGCTCCCAGTCAGACATGGAAACAAAAACTAGTTGCGTCAAAAGGAACCAGCGCAAGTGTAAATTCTGCTTCAAGCTAAGTAACTGCCGTAGAGGCTGCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005776 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0061919

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04139 ko04140 ko04150 ko04212 map04136 map04138 map04139 map04140 map04150 map04212

Pfam Domains

Protein Families

Pkinase

Protein Analysis

153

Amino Acids

17.4

Weight (kDa)

9.68

Isoelectric Point (pI)

50.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	58 - 117	1.2e-14	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	60 - 115	3.7e-10	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37840 AT2G37840 AT2G37840 AT3G53930 AT3G53930 AT3G53930 AT3G53930 AT3G53930
fragaria_vesca	FvH4_6g12940 FvH4_6g12940 FvH4_6g12940 FvH4_6g12940 FvH4_6g12940
malus_domestica	MD04G1136900.v1.1 MD08G1035900.v1.1 MD12G1151100.v1.1
prunus_persica	Prupe.6G262900_v2.0.a1 Prupe.6G262900_v2.0.a1 Prupe.6G262900_v2.0.a1
pyrus_communis	pycom04g12420 pycom12g14500 pycom12g14540
rosa_chinensis	RchiOBHm_Chr3g0465041 RchiOBHm_Chr6g0290621
rosa_laevigata	RLG00000024660
rosa_multiflora	Rmu_sc0002119.1_g000016 Rmu_sc0003072.1_g000002 Rmu_sc0004362.1_g000019 Rmu_sc0006588.1_g000005
rosa_roxburghii	Rroxscaffold_6G00415320
rosa_rugosa	Rorug03G0074800 Rorug03G0074800
rosa_samantha	Rh3BG138400 Rh3CG140800 Rh3CG149100 Rh3DG139900 Rh4CG187800 Rh5CG080500
rosa_wichuraiana	Rw3G011320 Rw5G006690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	15, 137, 227
AcoI	YGGCCR	1 cut(s)	267
AcsI	RAATTY	2 cut(s)	186, 419
AcuI	CTGAAG	1 cut(s)	296
AfaI	GTAC	1 cut(s)	206
AfeI	AGCGCT	1 cut(s)	359
AfiI	CCNNNNNNNGG	2 cut(s)	74, 199
AgsI	TTSAA	2 cut(s)	131, 430
AhlI	ACTAGT	1 cut(s)	386
AjnI	CCWGG	1 cut(s)	269
AluBI	AGCT	1 cut(s)	433
AluI	AGCT	1 cut(s)	433
Alw26I	GTCTC	1 cut(s)	14
AlwNI	CAGNNNCTG	1 cut(s)	263
Aor51HI	AGCGCT	1 cut(s)	359
AoxI	GGCC	3 cut(s)	16, 64, 267
ApaI	GGGCCC	1 cut(s)	68
ApeKI	GCWGC	2 cut(s)	293, 453
ApoI	RAATTY	2 cut(s)	186, 419
ArsI	GACNNNNNNTTYG	2 cut(s)	62, 94
AspLEI	GCGC	4 cut(s)	105, 243, 360, 411
AspS9I	GGNCC	3 cut(s)	17, 64, 65
AsuC2I	CCSGG	2 cut(s)	40, 335
AsuHPI	GGTGA	2 cut(s)	151, 230
BaeGI	GKGCMC	1 cut(s)	68
BalI	TGGCCA	1 cut(s)	269
BanII	GRGCYC	3 cut(s)	68, 86, 170
BarI	GAAGNNNNNNTAC	2 cut(s)	42, 74
BauI	CACGAG	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	57
BbvI	GCAGC	2 cut(s)	280, 440
BccI	CCATC	3 cut(s)	28, 120, 206
BceAI	ACGGC	1 cut(s)	429
BciT130I	CCWGG	1 cut(s)	271
BcnI	CCSGG	2 cut(s)	40, 335
BcoDI	GTCTC	1 cut(s)	14
BcuI	ACTAGT	1 cut(s)	386
BfaI	CTAG	1 cut(s)	387
BfmI	CTRYAG	1 cut(s)	294
BfoI	RGCGCY	3 cut(s)	106, 244, 361
BglI	GCCNNNNNGGC	1 cut(s)	450
BisI	GCNGC	4 cut(s)	16, 228, 294, 454
BlsI	GCNGC	4 cut(s)	17, 229, 295, 455
BmcAI	AGTACT	1 cut(s)	206
Bme1390I	CCNGG	3 cut(s)	40, 271, 335
BmgT120I	GGNCC	3 cut(s)	17, 64, 65
BmiI	GGNNCC	2 cut(s)	66, 404
BmrFI	CCNGG	3 cut(s)	40, 271, 335
BmrI	ACTGGG	3 cut(s)	71, 131, 358
BmuI	ACTGGG	3 cut(s)	71, 131, 358
BpiI	GAAGAC	1 cut(s)	57
BpmI	CTGGAG	1 cut(s)	221
BpuEI	CTTGAG	1 cut(s)	184
BpuMI	CCSGG	2 cut(s)	40, 335
BsaJI	CCNNGG	2 cut(s)	177, 244
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 199
Bse1I	ACTGG	3 cut(s)	66, 126, 364
BseBI	CCWGG	1 cut(s)	271
BseDI	CCNNGG	2 cut(s)	177, 244
BseGI	GGATG	1 cut(s)	327
BseLI	CCNNNNNNNGG	2 cut(s)	74, 199
BseNI	ACTGG	3 cut(s)	66, 126, 364
BseSI	GKGCMC	1 cut(s)	68
BseXI	GCAGC	2 cut(s)	280, 440
BshFI	GGCC	3 cut(s)	18, 66, 269
BsiSI	CCGG	2 cut(s)	40, 334
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	2 cut(s)	74, 199
BsmAI	GTCTC	1 cut(s)	14
BsmFI	GGGAC	1 cut(s)	22
BsnI	GGCC	3 cut(s)	18, 66, 269
Bsp120I	GGGCCC	1 cut(s)	64
Bsp1286I	GDGCHC	3 cut(s)	68, 86, 170
Bsp143I	GATC	1 cut(s)	45
Bsp19I	CCATGG	1 cut(s)	244
BspACI	CCGC	3 cut(s)	15, 137, 227
BspANI	GGCC	3 cut(s)	18, 66, 269
BspHI	TCATGA	1 cut(s)	279
BspLI	GGNNCC	2 cut(s)	66, 404
BspMAI	CTGCAG	1 cut(s)	298
BsrI	ACTGG	3 cut(s)	66, 126, 364
BssECI	CCNNGG	2 cut(s)	177, 244
BssMI	GATC	1 cut(s)	45
BssSI	CACGAG	1 cut(s)	194
BssT1I	CCWWGG	2 cut(s)	177, 244
Bst2BI	CACGAG	1 cut(s)	194
Bst2UI	CCWGG	1 cut(s)	271
Bst4CI	ACNGT	3 cut(s)	209, 265, 351
BstC8I	GCNNGC	1 cut(s)	356
BstDEI	CTNAG	1 cut(s)	434
BstDSI	CCRYGG	1 cut(s)	244
BstF5I	GGATG	1 cut(s)	327
BstH2I	RGCGCY	3 cut(s)	106, 244, 361
BstHHI	GCGC	4 cut(s)	105, 243, 360, 411
BstKTI	GATC	1 cut(s)	48
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	1 cut(s)	45
BstMWI	GCNNNNNNNGC	1 cut(s)	450
BstNI	CCWGG	1 cut(s)	271
BstSCI	CCNGG	3 cut(s)	38, 269, 333
BstSFI	CTRYAG	1 cut(s)	294
BstSLI	GKGCMC	1 cut(s)	68
BstV1I	GCAGC	2 cut(s)	280, 440
BstV2I	GAAGAC	1 cut(s)	57
BsuRI	GGCC	3 cut(s)	18, 66, 269
BtgI	CCRYGG	1 cut(s)	244
BtgZI	GCGATG	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	327
BtsIMutI	CAGTG	1 cut(s)	356
Cac8I	GCNNGC	1 cut(s)	356
CaiI	CAGNNNCTG	1 cut(s)	263
CciI	TCATGA	1 cut(s)	279
CfoI	GCGC	4 cut(s)	105, 243, 360, 411
Cfr13I	GGNCC	3 cut(s)	17, 64, 65
CseI	GACGC	1 cut(s)	382
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	3 cut(s)	245, 280, 373
CviJI	RGCY	9 cut(s)	18, 66, 84, 168, 230, 269, 293, 433, 453
CviKI_1	RGCY	9 cut(s)	18, 66, 84, 168, 230, 269, 293, 433, 453
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	1 cut(s)	434
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
DraI	TTTAAA	1 cut(s)	342
EaeI	YGGCCR	1 cut(s)	267
Eco130I	CCWWGG	2 cut(s)	177, 244
Eco24I	GRGCYC	3 cut(s)	68, 86, 170
Eco47III	AGCGCT	1 cut(s)	359
Eco57I	CTGAAG	1 cut(s)	296
EcoRII	CCWGG	1 cut(s)	269
EcoT14I	CCWWGG	2 cut(s)	177, 244
EcoT38I	GRGCYC	3 cut(s)	68, 86, 170
ErhI	CCWWGG	2 cut(s)	177, 244
FaeI	CATG	3 cut(s)	248, 283, 376
FaiI	YATR	6 cut(s)	59, 234, 236, 246, 281, 374
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	3 cut(s)	244, 279, 372
Fnu4HI	GCNGC	4 cut(s)	16, 228, 294, 454
FokI	GGATG	1 cut(s)	314
FriOI	GRGCYC	3 cut(s)	68, 86, 170
Fsp4HI	GCNGC	4 cut(s)	16, 228, 294, 454
FspBI	CTAG	1 cut(s)	387
GlaI	GCGC	4 cut(s)	104, 242, 359, 410
GluI	GCNGC	4 cut(s)	16, 228, 294, 454
GsuI	CTGGAG	1 cut(s)	221
HaeII	RGCGCY	3 cut(s)	106, 244, 361
HaeIII	GGCC	3 cut(s)	18, 66, 269
HapII	CCGG	2 cut(s)	40, 334
HgaI	GACGC	1 cut(s)	382
HhaI	GCGC	4 cut(s)	105, 243, 360, 411
Hin1II	CATG	3 cut(s)	248, 283, 376
Hin6I	GCGC	4 cut(s)	103, 241, 358, 409
HinP1I	GCGC	4 cut(s)	103, 241, 358, 409
HpaII	CCGG	2 cut(s)	40, 334
HphI	GGTGA	2 cut(s)	151, 230
Hpy188I	TCNGA	2 cut(s)	259, 370
Hpy188III	TCNNGA	2 cut(s)	280, 314
Hpy99I	CGWCG	2 cut(s)	95, 98
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	3 cut(s)	209, 265, 351
HpyCH4V	TGCA	3 cut(s)	296, 304, 456
HpyF10VI	GCNNNNNNNGC	1 cut(s)	450
HpyF3I	CTNAG	1 cut(s)	434
Hsp92II	CATG	3 cut(s)	248, 283, 376
HspAI	GCGC	4 cut(s)	103, 241, 358, 409
Kzo9I	GATC	1 cut(s)	45
LmnI	GCTCC	1 cut(s)	365
Lsp1109I	GCAGC	2 cut(s)	280, 440
MaeI	CTAG	1 cut(s)	387
MaeIII	GTNAC	2 cut(s)	218, 437
MalI	GATC	1 cut(s)	47
MboI	GATC	1 cut(s)	45
MboII	GAAGA	1 cut(s)	62
MfeI	CAATTG	1 cut(s)	287
MhlI	GDGCHC	3 cut(s)	68, 86, 170
MlsI	TGGCCA	1 cut(s)	269
MluCI	AATT	3 cut(s)	186, 287, 419
MluNI	TGGCCA	1 cut(s)	269
MnlI	CCTC	4 cut(s)	203, 276, 335, 443
Mox20I	TGGCCA	1 cut(s)	269
MscI	TGGCCA	1 cut(s)	269
MseI	TTAA	2 cut(s)	341, 460
Msp20I	TGGCCA	1 cut(s)	269
MspI	CCGG	2 cut(s)	40, 334
MspR9I	CCNGG	3 cut(s)	40, 271, 335
MunI	CAATTG	1 cut(s)	287
MvaI	CCWGG	1 cut(s)	271
MwoI	GCNNNNNNNGC	1 cut(s)	450
NciI	CCSGG	2 cut(s)	40, 335
NcoI	CCATGG	1 cut(s)	244
NdeII	GATC	1 cut(s)	45
NlaIII	CATG	3 cut(s)	248, 283, 376
NlaIV	GGNNCC	2 cut(s)	66, 404
NmuCI	GTSAC	1 cut(s)	218
PagI	TCATGA	1 cut(s)	279
PkrI	GCNGC	4 cut(s)	17, 229, 295, 455
Psp6I	CCWGG	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	269
PspN4I	GGNNCC	2 cut(s)	66, 404
PspOMI	GGGCCC	1 cut(s)	64
PspPI	GGNCC	3 cut(s)	17, 64, 65
PstI	CTGCAG	1 cut(s)	298
PstNI	CAGNNNCTG	1 cut(s)	263
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SaqAI	TTAA	2 cut(s)	341, 460
SatI	GCNGC	4 cut(s)	16, 228, 294, 454
Sau3AI	GATC	1 cut(s)	45
Sau96I	GGNCC	3 cut(s)	17, 64, 65
ScaI	AGTACT	1 cut(s)	206
ScrFI	CCNGG	3 cut(s)	40, 271, 335
SduI	GDGCHC	3 cut(s)	68, 86, 170
SetI	ASST	3 cut(s)	195, 327, 435
SfcI	CTRYAG	1 cut(s)	294
SmlI	CTYRAG	1 cut(s)	163
SmoI	CTYRAG	1 cut(s)	163
SpeI	ACTAGT	1 cut(s)	386
Sse9I	AATT	3 cut(s)	186, 287, 419
SsiI	CCGC	3 cut(s)	15, 137, 227
SspMI	CTAG	1 cut(s)	387
StyD4I	CCNGG	3 cut(s)	38, 269, 333
StyI	CCWWGG	2 cut(s)	177, 244
TaaI	ACNGT	3 cut(s)	209, 265, 351
TaqI	TCGA	2 cut(s)	48, 107
TasI	AATT	3 cut(s)	186, 287, 419
TatI	WGTACW	1 cut(s)	204
TauI	GCSGC	2 cut(s)	18, 230
Tru1I	TTAA	2 cut(s)	341, 460
Tru9I	TTAA	2 cut(s)	341, 460
TscAI	CASTG	1 cut(s)	356
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	2 cut(s)	293, 453
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	1 cut(s)	268
TspRI	CASTG	1 cut(s)	356
XapI	RAATTY	2 cut(s)	186, 419
XspI	CTAG	1 cut(s)	387
ZrmI	AGTACT	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.