Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002672

Physical Location & Seq

Genomic Coordinates Forward (+)

17029160 .. 17031349

Gene Structure 2190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g14500.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGAAATTTTTCCACTCAACCATACCTAACATTATTGGGTTGTGGATTACTTATGGTTTTGGGCTGACATTGATTCTCAACATTCAGAACATACTGAAAGCAACTGAGTTGCAGTTCCCTTCAGACAGCAACAATTTGAGTTCAGAGTGCAAGGAATTGTGTCAGAAATTGTTACGCCGCAATCCAGTGGAACGCCTAACATTTGAAGAGTTCTTTGATCACCCATTTCTTTCTCAACAGTCACCATATTCAAGGAGTAGGAGGGCATCAAGAATGGTGGATGGACTTCCTACATCTGAATGCAATGCAATGACGAACATGGAGGAAAGTTCTCAAGAGGATTGTCTGCCTTTCCATTTAGATGATGATTCCAGTGGCCCTGAGGGGAGCCCATCCTTTTCAAGGAGGAGGTCCTCGATGAAGTACACTTATGGATTTTCTCTCGATACAAAAGGTGATAGACGGGAAGCATCACCTACCACTTCGTACAGATATGGCAGTGCAACACGTAAAGAAAATTCTAGTCTTAGGTTGGACGGCCATAGACCATTAGATAGAAATCTAACTGACCCTCTAAGATTTGTGCACCAAAAACCAGTGAATGCTCGATCAAGAGTTATGGATTCGCTGGAGTTGATTGATCAAGATTATGTTCTTGTGTCTGGACCTTCAGTTGATGTGTCTTCTTCCTCAGCTAGTGCTTCCAAACCAAGCCCTTCTTTATACAAATCACAGAGTCTCCCTCGAGAATCTTTAGCCACCTCATCAAGTGCCCCAATGCCAATCAAGGGTGCAGCTGCTAATAGTAACGTGTGTTGCATAAGAAGCTTGGATAGTCAGAGTTCTGCTCCAGGGACGGCACTTGGATCAACGGATATGGGAGATGCGTTGGAGCAGCCATCAACACACTGCATGACAAGGCTTAGTTCGTTGCAGCAATGTGTGTCTGCTATTACTGAATTAGATCATGAAAATGTAAATCATGAGATGCCCACTTGTATGAAGTTGTTTATGGTTCCCTCTGTAAAATCAGTAACTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0009405 GO:0009847 GO:0009987 GO:0012501 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044409 GO:0044419 GO:0048102 GO:0051701 GO:0051704 GO:0051828 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04139 ko04140 ko04150 ko04212 map04136 map04138 map04139 map04140 map04150 map04212

Pfam Domains

Protein Families

Pkinase

Protein Analysis

348

Amino Acids

38.42

Weight (kDa)

6.26

Isoelectric Point (pI)

75.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37840 AT2G37840 AT2G37840 AT3G53930 AT3G53930 AT3G53930 AT3G53930 AT3G53930
fragaria_vesca	FvH4_6g12940 FvH4_6g12940 FvH4_6g12940 FvH4_6g12940 FvH4_6g12940
malus_domestica	MD04G1136900.v1.1 MD08G1035900.v1.1 MD12G1151100.v1.1
prunus_persica	Prupe.6G262900_v2.0.a1 Prupe.6G262900_v2.0.a1 Prupe.6G262900_v2.0.a1
pyrus_communis	pycom04g12420 pycom12g14500 pycom12g14540
rosa_chinensis	RchiOBHm_Chr3g0465041 RchiOBHm_Chr6g0290621
rosa_laevigata	RLG00000024660
rosa_multiflora	Rmu_sc0002119.1_g000016 Rmu_sc0003072.1_g000002 Rmu_sc0004362.1_g000019 Rmu_sc0006588.1_g000005
rosa_roxburghii	Rroxscaffold_6G00415320
rosa_rugosa	Rorug03G0074800 Rorug03G0074800
rosa_samantha	Rh3BG138400 Rh3CG140800 Rh3CG149100 Rh3DG139900 Rh4CG187800 Rh5CG080500
rosa_wichuraiana	Rw3G011320 Rw5G006690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	178
AclWI	GGATC	1 cut(s)	874
AcoI	YGGCCR	1 cut(s)	538
AcsI	RAATTY	2 cut(s)	5, 517
AcuI	CTGAAG	2 cut(s)	105, 654
AfaI	GTAC	2 cut(s)	425, 488
AfiI	CCNNNNNNNGG	2 cut(s)	402, 788
AflIII	ACRYGT	2 cut(s)	506, 810
AgsI	TTSAA	3 cut(s)	206, 252, 402
AjnI	CCWGG	1 cut(s)	850
AluBI	AGCT	3 cut(s)	695, 797, 828
AluI	AGCT	3 cut(s)	695, 797, 828
Alw21I	GWGCWC	1 cut(s)	588
Alw26I	GTCTC	1 cut(s)	743
Alw44I	GTGCAC	1 cut(s)	584
AlwI	GGATC	1 cut(s)	874
Ama87I	CYCGRG	1 cut(s)	744
AoxI	GGCC	2 cut(s)	376, 538
ApaLI	GTGCAC	1 cut(s)	584
ApeKI	GCWGC	4 cut(s)	794, 797, 895, 934
ApoI	RAATTY	2 cut(s)	5, 517
Asp700I	GAANNNNTTC	1 cut(s)	8
AspS9I	GGNCC	3 cut(s)	377, 411, 665
AsuHPI	GGTGA	4 cut(s)	212, 234, 465, 467
AvaI	CYCGRG	1 cut(s)	744
AvaII	GGWCC	2 cut(s)	411, 665
AxyI	CCTNAGG	1 cut(s)	381
BaeGI	GKGCMC	2 cut(s)	588, 775
BanII	GRGCYC	1 cut(s)	392
BbsI	GAAGAC	1 cut(s)	675
Bbv12I	GWGCWC	1 cut(s)	588
BbvCI	CCTCAGC	1 cut(s)	691
BbvI	GCAGC	4 cut(s)	784, 806, 907, 946
BccI	CCATC	3 cut(s)	275, 400, 907
BceAI	ACGGC	2 cut(s)	553, 873
BciT130I	CCWGG	1 cut(s)	852
BclI	TGATCA	2 cut(s)	217, 640
BcoDI	GTCTC	1 cut(s)	743
BfaI	CTAG	2 cut(s)	522, 696
BisI	GCNGC	5 cut(s)	178, 795, 798, 896, 935
BlsI	GCNGC	5 cut(s)	179, 796, 799, 897, 936
Bme1390I	CCNGG	1 cut(s)	852
Bme18I	GGWCC	2 cut(s)	411, 665
BmeT110I	CYCGRG	1 cut(s)	744
BmgT120I	GGNCC	3 cut(s)	377, 411, 665
BmiI	GGNNCC	2 cut(s)	389, 1017
BmrFI	CCNGG	1 cut(s)	852
BmsI	GCATC	4 cut(s)	275, 479, 874, 978
BpiI	GAAGAC	1 cut(s)	675
BplI	GAGNNNNNCTC	4 cut(s)	727, 759, 832, 864
BpmI	CTGGAG	2 cut(s)	650, 834
Bpu10I	CCTNAGC	1 cut(s)	691
BpuEI	CTTGAG	1 cut(s)	318
BsaAI	YACGTR	1 cut(s)	509
BsaBI	GATNNNNATC	1 cut(s)	558
BsaJI	CCNNGG	1 cut(s)	851
BsaXI	ACNNNNNCTCC	2 cut(s)	723, 753
Bsc4I	CCNNNNNNNGG	2 cut(s)	402, 788
Bse1I	ACTGG	3 cut(s)	185, 372, 596
Bse21I	CCTNAGG	1 cut(s)	381
Bse3DI	GCAATG	3 cut(s)	310, 315, 944
Bse8I	GATNNNNATC	1 cut(s)	558
BseBI	CCWGG	1 cut(s)	852
BseDI	CCNNGG	1 cut(s)	851
BseGI	GGATG	2 cut(s)	286, 392
BseJI	GATNNNNATC	1 cut(s)	558
BseLI	CCNNNNNNNGG	2 cut(s)	402, 788
BseMI	GCAATG	3 cut(s)	310, 315, 944
BseMII	CTCAG	3 cut(s)	96, 372, 705
BseNI	ACTGG	3 cut(s)	185, 372, 596
BseRI	GAGGAG	1 cut(s)	421
BseSI	GKGCMC	2 cut(s)	588, 775
BseXI	GCAGC	4 cut(s)	784, 806, 907, 946
BsgI	GTGCAG	1 cut(s)	813
BshFI	GGCC	2 cut(s)	378, 540
BsiHKAI	GWGCWC	1 cut(s)	588
BsiHKCI	CYCGRG	1 cut(s)	744
BslFI	GGGAC	1 cut(s)	868
BslI	CCNNNNNNNGG	2 cut(s)	402, 788
BsmAI	GTCTC	1 cut(s)	743
BsmFI	GGGAC	1 cut(s)	868
BsmI	GAATGC	2 cut(s)	305, 607
BsnI	GGCC	2 cut(s)	378, 540
BsoBI	CYCGRG	1 cut(s)	744
Bsp1286I	GDGCHC	3 cut(s)	392, 588, 775
Bsp143I	GATC	5 cut(s)	217, 608, 640, 866, 964
BspACI	CCGC	1 cut(s)	178
BspANI	GGCC	2 cut(s)	378, 540
BspCNI	CTCAG	3 cut(s)	97, 373, 704
BspHI	TCATGA	2 cut(s)	967, 982
BspLI	GGNNCC	2 cut(s)	389, 1017
BspPI	GGATC	1 cut(s)	874
BsrDI	GCAATG	3 cut(s)	310, 315, 944
BsrI	ACTGG	3 cut(s)	185, 372, 596
BssECI	CCNNGG	1 cut(s)	851
BssMI	GATC	5 cut(s)	217, 608, 640, 866, 964
Bst2UI	CCWGG	1 cut(s)	852
Bst4CI	ACNGT	1 cut(s)	240
Bst6I	CTCTTC	1 cut(s)	201
BstBAI	YACGTR	1 cut(s)	509
BstDEI	CTNAG	6 cut(s)	105, 381, 527, 575, 691, 923
BstENI	CCTNNNNNAGG	1 cut(s)	400
BstF5I	GGATG	2 cut(s)	286, 392
BstKTI	GATC	5 cut(s)	220, 611, 643, 869, 967
BstMAI	GTCTC	1 cut(s)	743
BstMBI	GATC	5 cut(s)	217, 608, 640, 866, 964
BstMWI	GCNNNNNNNGC	1 cut(s)	825
BstNI	CCWGG	1 cut(s)	852
BstSCI	CCNGG	1 cut(s)	850
BstSLI	GKGCMC	2 cut(s)	588, 775
BstV1I	GCAGC	4 cut(s)	784, 806, 907, 946
BstV2I	GAAGAC	1 cut(s)	675
Bsu36I	CCTNAGG	1 cut(s)	381
BsuRI	GGCC	2 cut(s)	378, 540
BtsCI	GGATG	2 cut(s)	286, 392
BtsI	GCAGTG	2 cut(s)	505, 907
BtsIMutI	CAGTG	5 cut(s)	192, 379, 505, 603, 907
CciI	TCATGA	2 cut(s)	967, 982
Cfr13I	GGNCC	3 cut(s)	377, 411, 665
Csp6I	GTAC	2 cut(s)	424, 487
CspCI	CAANNNNNGTGG	2 cut(s)	258, 293
CviAII	CATG	4 cut(s)	319, 913, 968, 983
CviQI	GTAC	2 cut(s)	424, 487
DdeI	CTNAG	6 cut(s)	105, 381, 527, 575, 691, 923
DpnI	GATC	5 cut(s)	219, 610, 642, 868, 966
DpnII	GATC	5 cut(s)	217, 608, 640, 866, 964
EaeI	YGGCCR	1 cut(s)	538
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	392
Eco47I	GGWCC	2 cut(s)	411, 665
Eco57I	CTGAAG	2 cut(s)	105, 654
Eco81I	CCTNAGG	1 cut(s)	381
Eco88I	CYCGRG	1 cut(s)	744
EcoNI	CCTNNNNNAGG	1 cut(s)	400
EcoO109I	RGGNCCY	1 cut(s)	411
EcoRII	CCWGG	1 cut(s)	850
EcoT38I	GRGCYC	1 cut(s)	392
FaeI	CATG	4 cut(s)	322, 916, 971, 986
FalI	AAGNNNNNCTT	2 cut(s)	703, 735
FaqI	GGGAC	1 cut(s)	868
FatI	CATG	4 cut(s)	318, 912, 967, 982
FbaI	TGATCA	2 cut(s)	217, 640
Fnu4HI	GCNGC	5 cut(s)	178, 795, 798, 896, 935
FokI	GGATG	2 cut(s)	293, 379
FriOI	GRGCYC	1 cut(s)	392
Fsp4HI	GCNGC	5 cut(s)	178, 795, 798, 896, 935
FspBI	CTAG	2 cut(s)	522, 696
GluI	GCNGC	5 cut(s)	178, 795, 798, 896, 935
GsuI	CTGGAG	2 cut(s)	650, 834
HaeIII	GGCC	2 cut(s)	378, 540
Hin1II	CATG	4 cut(s)	322, 916, 971, 986
HindIII	AAGCTT	1 cut(s)	826
HinfI	GANTC	5 cut(s)	73, 368, 623, 736, 749
HphI	GGTGA	4 cut(s)	212, 234, 465, 467
Hpy166II	GTNNAC	2 cut(s)	426, 586
Hpy188I	TCNGA	6 cut(s)	87, 124, 145, 165, 298, 840
Hpy188III	TCNNGA	9 cut(s)	270, 335, 443, 612, 644, 663, 746, 968, 983
Hpy8I	GTNNAC	2 cut(s)	426, 586
HpyAV	CCTTC	3 cut(s)	129, 678, 726
HpyCH4III	ACNGT	1 cut(s)	240
HpyCH4IV	ACGT	2 cut(s)	508, 810
HpyF10VI	GCNNNNNNNGC	1 cut(s)	825
HpyF3I	CTNAG	6 cut(s)	105, 381, 527, 575, 691, 923
HpySE526I	ACGT	2 cut(s)	508, 810
Hsp92II	CATG	4 cut(s)	322, 916, 971, 986
Ksp22I	TGATCA	2 cut(s)	217, 640
Kzo9I	GATC	5 cut(s)	217, 608, 640, 866, 964
LmnI	GCTCC	3 cut(s)	387, 853, 892
LpnPI	CCDG	8 cut(s)	198, 385, 393, 609, 614, 648, 837, 864
Lsp1109I	GCAGC	4 cut(s)	784, 806, 907, 946
LweI	GCATC	4 cut(s)	275, 479, 874, 978
MaeI	CTAG	2 cut(s)	522, 696
MaeII	ACGT	2 cut(s)	508, 810
MaeIII	GTNAC	4 cut(s)	171, 240, 806, 1033
MalI	GATC	5 cut(s)	219, 610, 642, 868, 966
MboI	GATC	5 cut(s)	217, 608, 640, 866, 964
MboII	GAAGA	3 cut(s)	218, 675, 678
MhlI	GDGCHC	3 cut(s)	392, 588, 775
MluCI	AATT	6 cut(s)	5, 133, 155, 167, 517, 959
MlyI	GAGTC	1 cut(s)	745
MmeI	TCCRAC	2 cut(s)	513, 870
MroXI	GAANNNNTTC	1 cut(s)	8
MslI	CAYNNNNRTG	4 cut(s)	298, 360, 972, 998
MspA1I	CMGCKG	1 cut(s)	797
MspR9I	CCNGG	1 cut(s)	852
Mva1269I	GAATGC	2 cut(s)	305, 607
MvaI	CCWGG	1 cut(s)	852
MwoI	GCNNNNNNNGC	1 cut(s)	825
NdeII	GATC	5 cut(s)	217, 608, 640, 866, 964
NlaIII	CATG	4 cut(s)	322, 916, 971, 986
NlaIV	GGNNCC	2 cut(s)	389, 1017
NmuCI	GTSAC	1 cut(s)	240
PaeR7I	CTCGAG	1 cut(s)	744
PagI	TCATGA	2 cut(s)	967, 982
PctI	GAATGC	2 cut(s)	305, 607
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	4 cut(s)	73, 368, 623, 749
PkrI	GCNGC	5 cut(s)	179, 796, 799, 897, 936
PleI	GAGTC	1 cut(s)	744
PpsI	GAGTC	1 cut(s)	744
Ppu21I	YACGTR	1 cut(s)	509
PpuMI	RGGWCCY	1 cut(s)	411
Psp5II	RGGWCCY	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	850
PspGI	CCWGG	1 cut(s)	850
PspN4I	GGNNCC	2 cut(s)	389, 1017
PspPI	GGNCC	3 cut(s)	377, 411, 665
PspPPI	RGGWCCY	1 cut(s)	411
PvuII	CAGCTG	1 cut(s)	797
RsaI	GTAC	2 cut(s)	425, 488
RsaNI	GTAC	2 cut(s)	424, 487
RseI	CAYNNNNRTG	4 cut(s)	298, 360, 972, 998
SatI	GCNGC	5 cut(s)	178, 795, 798, 896, 935
Sau3AI	GATC	5 cut(s)	217, 608, 640, 866, 964
Sau96I	GGNCC	3 cut(s)	377, 411, 665
SchI	GAGTC	1 cut(s)	745
ScrFI	CCNGG	1 cut(s)	852
SduI	GDGCHC	3 cut(s)	392, 588, 775
SfaNI	GCATC	4 cut(s)	275, 479, 874, 978
Sfr274I	CTCGAG	1 cut(s)	744
SinI	GGWCC	2 cut(s)	411, 665
SlaI	CTCGAG	1 cut(s)	744
SmiMI	CAYNNNNRTG	4 cut(s)	298, 360, 972, 998
SmlI	CTYRAG	2 cut(s)	333, 744
SmoI	CTYRAG	2 cut(s)	333, 744
Sse9I	AATT	6 cut(s)	5, 133, 155, 167, 517, 959
SsiI	CCGC	1 cut(s)	178
SspMI	CTAG	2 cut(s)	522, 696
StyD4I	CCNGG	1 cut(s)	850
TaaI	ACNGT	1 cut(s)	240
TaiI	ACGT	2 cut(s)	511, 813
TaqI	TCGA	4 cut(s)	416, 444, 607, 745
TasI	AATT	6 cut(s)	5, 133, 155, 167, 517, 959
TatI	WGTACW	1 cut(s)	423
TauI	GCSGC	1 cut(s)	180
TfiI	GAWTC	4 cut(s)	73, 368, 623, 749
TscAI	CASTG	5 cut(s)	192, 379, 505, 603, 914
TseFI	GTSAC	1 cut(s)	240
TseI	GCWGC	4 cut(s)	794, 797, 895, 934
Tsp45I	GTSAC	1 cut(s)	240
TspDTI	ATGAA	4 cut(s)	17, 434, 984, 1016
TspGWI	ACGGA	1 cut(s)	887
TspRI	CASTG	5 cut(s)	192, 379, 505, 603, 914
VneI	GTGCAC	1 cut(s)	584
VpaK11BI	GGWCC	2 cut(s)	411, 665
XagI	CCTNNNNNAGG	1 cut(s)	400
XapI	RAATTY	2 cut(s)	5, 517
XhoI	CTCGAG	1 cut(s)	744
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	2 cut(s)	522, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.