Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006588.1

Orthogroup ID

OG0002672

Physical Location & Seq

Genomic Coordinates Forward (+)

22802 .. 23317

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006588.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

atggatagtctcggcggcccatcaaacaccaacaagtcccggttgatcggagactacatactgggccagaaagttgggtcgggctcgttcgccgtcgtctggcgctcgacccccatcgccaactggaccaaggaaagaatttaccttgtgctggagtactgtaatggtggtgacttggcggcttatatacagcgccatgggaaagtttcagaaactgtggccaggcacttcatgaggcaattgggtattgtgtgctatgctcggtttgattgtttttggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005776 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0061919

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04139 ko04140 ko04150 ko04212 map04136 map04138 map04139 map04140 map04150 map04212

Pfam Domains

Protein Families

Pkinase

Protein Analysis

93

Amino Acids

10.49

Weight (kDa)

9.18

Isoelectric Point (pI)

24.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37840 AT2G37840 AT2G37840 AT3G53930 AT3G53930 AT3G53930 AT3G53930 AT3G53930
fragaria_vesca	FvH4_6g12940 FvH4_6g12940 FvH4_6g12940 FvH4_6g12940 FvH4_6g12940
malus_domestica	MD04G1136900.v1.1 MD08G1035900.v1.1 MD12G1151100.v1.1
prunus_persica	Prupe.6G262900_v2.0.a1 Prupe.6G262900_v2.0.a1 Prupe.6G262900_v2.0.a1
pyrus_communis	pycom04g12420 pycom12g14500 pycom12g14540
rosa_chinensis	RchiOBHm_Chr3g0465041 RchiOBHm_Chr6g0290621
rosa_laevigata	RLG00000024660
rosa_multiflora	Rmu_sc0002119.1_g000016 Rmu_sc0003072.1_g000002 Rmu_sc0004362.1_g000019 Rmu_sc0006588.1_g000005
rosa_roxburghii	Rroxscaffold_6G00415320
rosa_rugosa	Rorug03G0074800 Rorug03G0074800
rosa_samantha	Rh3BG138400 Rh3CG140800 Rh3CG149100 Rh3DG139900 Rh4CG187800 Rh5CG080500
rosa_wichuraiana	Rw3G011320 Rw5G006690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	15, 179
AcoI	YGGCCR	1 cut(s)	219
AcsI	RAATTY	1 cut(s)	138
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	99, 151
AjnI	CCWGG	1 cut(s)	221
Alw26I	GTCTC	2 cut(s)	14, 45
AlwNI	CAGNNNCTG	1 cut(s)	215
AoxI	GGCC	3 cut(s)	16, 64, 219
ApoI	RAATTY	1 cut(s)	138
AspLEI	GCGC	2 cut(s)	105, 195
AspS9I	GGNCC	3 cut(s)	17, 64, 126
AsuC2I	CCSGG	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	126
BalI	TGGCCA	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	86
BccI	CCATC	2 cut(s)	28, 122
BceAI	ACGGC	1 cut(s)	77
BciT130I	CCWGG	1 cut(s)	223
BcnI	CCSGG	1 cut(s)	40
BcoDI	GTCTC	2 cut(s)	14, 45
BfoI	RGCGCY	2 cut(s)	106, 196
BisI	GCNGC	2 cut(s)	16, 180
BlsI	GCNGC	2 cut(s)	17, 181
BmcAI	AGTACT	1 cut(s)	158
Bme1390I	CCNGG	2 cut(s)	40, 223
Bme18I	GGWCC	1 cut(s)	126
BmgT120I	GGNCC	3 cut(s)	17, 64, 126
BmrFI	CCNGG	2 cut(s)	40, 223
BmrI	ACTGGG	1 cut(s)	71
BmuI	ACTGGG	1 cut(s)	71
BpmI	CTGGAG	1 cut(s)	173
BpuMI	CCSGG	1 cut(s)	40
BsaJI	CCNNGG	2 cut(s)	129, 196
Bsc4I	CCNNNNNNNGG	2 cut(s)	99, 151
Bse1I	ACTGG	2 cut(s)	66, 128
BseBI	CCWGG	1 cut(s)	223
BseDI	CCNNGG	2 cut(s)	129, 196
BseLI	CCNNNNNNNGG	2 cut(s)	99, 151
BseNI	ACTGG	2 cut(s)	66, 128
BshFI	GGCC	3 cut(s)	18, 66, 221
BsiSI	CCGG	1 cut(s)	40
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	2 cut(s)	99, 151
BsmAI	GTCTC	2 cut(s)	14, 45
BsmFI	GGGAC	1 cut(s)	22
BsnI	GGCC	3 cut(s)	18, 66, 221
Bsp1286I	GDGCHC	1 cut(s)	86
Bsp143I	GATC	1 cut(s)	45
Bsp19I	CCATGG	1 cut(s)	196
BspACI	CCGC	2 cut(s)	15, 179
BspANI	GGCC	3 cut(s)	18, 66, 221
BspHI	TCATGA	1 cut(s)	231
BsrI	ACTGG	2 cut(s)	66, 128
BssECI	CCNNGG	2 cut(s)	129, 196
BssMI	GATC	1 cut(s)	45
BssT1I	CCWWGG	2 cut(s)	129, 196
Bst2UI	CCWGG	1 cut(s)	223
Bst4CI	ACNGT	2 cut(s)	161, 217
BstDSI	CCRYGG	1 cut(s)	196
BstH2I	RGCGCY	2 cut(s)	106, 196
BstHHI	GCGC	2 cut(s)	105, 195
BstKTI	GATC	1 cut(s)	48
BstMAI	GTCTC	2 cut(s)	14, 45
BstMBI	GATC	1 cut(s)	45
BstNI	CCWGG	1 cut(s)	223
BstSCI	CCNGG	2 cut(s)	38, 221
BstXI	CCANNNNNNTGG	1 cut(s)	74
BsuRI	GGCC	3 cut(s)	18, 66, 221
BtgI	CCRYGG	1 cut(s)	196
BtgZI	GCGATG	1 cut(s)	100
CaiI	CAGNNNCTG	1 cut(s)	215
CciI	TCATGA	1 cut(s)	231
CfoI	GCGC	2 cut(s)	105, 195
Cfr13I	GGNCC	3 cut(s)	17, 64, 126
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	2 cut(s)	197, 232
CviJI	RGCY	5 cut(s)	18, 66, 84, 182, 221
CviKI_1	RGCY	5 cut(s)	18, 66, 84, 182, 221
CviQI	GTAC	1 cut(s)	157
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
EaeI	YGGCCR	1 cut(s)	219
Eco130I	CCWWGG	2 cut(s)	129, 196
Eco24I	GRGCYC	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	126
EcoRII	CCWGG	1 cut(s)	221
EcoT14I	CCWWGG	2 cut(s)	129, 196
EcoT38I	GRGCYC	1 cut(s)	86
ErhI	CCWWGG	2 cut(s)	129, 196
FaeI	CATG	2 cut(s)	200, 235
FaiI	YATR	6 cut(s)	59, 186, 188, 198, 233, 258
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	2 cut(s)	196, 231
Fnu4HI	GCNGC	2 cut(s)	16, 180
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	2 cut(s)	16, 180
GlaI	GCGC	2 cut(s)	104, 194
GluI	GCNGC	2 cut(s)	16, 180
GsuI	CTGGAG	1 cut(s)	173
HaeII	RGCGCY	2 cut(s)	106, 196
HaeIII	GGCC	3 cut(s)	18, 66, 221
HapII	CCGG	1 cut(s)	40
HhaI	GCGC	2 cut(s)	105, 195
Hin1II	CATG	2 cut(s)	200, 235
Hin6I	GCGC	2 cut(s)	103, 193
HinP1I	GCGC	2 cut(s)	103, 193
HpaII	CCGG	1 cut(s)	40
HphI	GGTGA	1 cut(s)	182
Hpy188I	TCNGA	2 cut(s)	50, 211
Hpy188III	TCNNGA	1 cut(s)	232
Hpy99I	CGWCG	1 cut(s)	98
HpyCH4III	ACNGT	2 cut(s)	161, 217
Hsp92II	CATG	2 cut(s)	200, 235
HspAI	GCGC	2 cut(s)	103, 193
Kzo9I	GATC	1 cut(s)	45
LpnPI	CCDG	8 cut(s)	47, 53, 80, 85, 109, 137, 208, 235
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	1 cut(s)	47
MboI	GATC	1 cut(s)	45
MfeI	CAATTG	1 cut(s)	239
MhlI	GDGCHC	1 cut(s)	86
MlsI	TGGCCA	1 cut(s)	221
MluCI	AATT	2 cut(s)	138, 239
MluNI	TGGCCA	1 cut(s)	221
MnlI	CCTC	1 cut(s)	228
Mox20I	TGGCCA	1 cut(s)	221
MscI	TGGCCA	1 cut(s)	221
Msp20I	TGGCCA	1 cut(s)	221
MspI	CCGG	1 cut(s)	40
MspR9I	CCNGG	2 cut(s)	40, 223
MunI	CAATTG	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	223
NciI	CCSGG	1 cut(s)	40
NcoI	CCATGG	1 cut(s)	196
NdeII	GATC	1 cut(s)	45
NlaIII	CATG	2 cut(s)	200, 235
NmuCI	GTSAC	1 cut(s)	170
PagI	TCATGA	1 cut(s)	231
PkrI	GCNGC	2 cut(s)	17, 181
Psp6I	CCWGG	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	221
PspPI	GGNCC	3 cut(s)	17, 64, 126
PstNI	CAGNNNCTG	1 cut(s)	215
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SatI	GCNGC	2 cut(s)	16, 180
Sau3AI	GATC	1 cut(s)	45
Sau96I	GGNCC	3 cut(s)	17, 64, 126
ScaI	AGTACT	1 cut(s)	158
ScrFI	CCNGG	2 cut(s)	40, 223
SduI	GDGCHC	1 cut(s)	86
SetI	ASST	1 cut(s)	147
SinI	GGWCC	1 cut(s)	126
Sse9I	AATT	2 cut(s)	138, 239
SsiI	CCGC	2 cut(s)	15, 179
StyD4I	CCNGG	2 cut(s)	38, 221
StyI	CCWWGG	2 cut(s)	129, 196
TaaI	ACNGT	2 cut(s)	161, 217
TaqI	TCGA	1 cut(s)	107
TasI	AATT	2 cut(s)	138, 239
TatI	WGTACW	1 cut(s)	156
TauI	GCSGC	2 cut(s)	18, 182
TseFI	GTSAC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	126
XapI	RAATTY	1 cut(s)	138
ZrmI	AGTACT	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.