Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002672

Physical Location & Seq

Genomic Coordinates Reverse (-)

6943739 .. 6944759

Gene Structure 1021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G006690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGATAGTCTCGGCGGCCCATCAAACACCAACAAGTCCCGGTTGATCGGAGACTACATACTGGGCCCGAAAGTTGGGTCGGGCTCGTTGGCGGTCGTCTGGCGCTCGACCCATCGCCAACTGGGTATTGAAGTTGCGGTGAAGGAGATTGACAAGAAACACTTGAGCCCAAAAGTCAGCGAGAGTTTACTTAAGGAAATTTCGATTCTTAGCACCATAAAACCATCCCAATATTATTCACCTTTTTTAGGCCATCCAGGTAACTTTTTTTTTTTTTTTTCCTTTCTGGGTTTTGAGAGCACTAAGGAAAGAATTTACCTTGTGCTGGAGTACTGTGATGGTGGTGACTTGGCGGCTTATATACAGCGCCATGGGAAAGTTTCAGAAACTGTGGCCAGGCACTTCATGAGGCAATTGGCTGCAGGATTGCAAGTGCTTCAGGAAAAGCACCTCATCCACCGGGATTTAAAACCACAGGTACGGCGTTTCTTCACATCAGTCAGCCAAAAATTGCAAATTGCCAAATTTATCGGGTATTCTGCTTTTTTGGTTGGTCGTGCTTGTGGCTCATGTGAACTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005776 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0061919

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04139 ko04140 ko04150 ko04212 map04136 map04138 map04139 map04140 map04150 map04212

Pfam Domains

Protein Families

Pkinase

Protein Analysis

194

Amino Acids

21.77

Weight (kDa)

9.56

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	21 - 159	1.8e-23	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	23 - 157	2.5e-15	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37840 AT2G37840 AT2G37840 AT3G53930 AT3G53930 AT3G53930 AT3G53930 AT3G53930
fragaria_vesca	FvH4_6g12940 FvH4_6g12940 FvH4_6g12940 FvH4_6g12940 FvH4_6g12940
malus_domestica	MD04G1136900.v1.1 MD08G1035900.v1.1 MD12G1151100.v1.1
prunus_persica	Prupe.6G262900_v2.0.a1 Prupe.6G262900_v2.0.a1 Prupe.6G262900_v2.0.a1
pyrus_communis	pycom04g12420 pycom12g14500 pycom12g14540
rosa_chinensis	RchiOBHm_Chr3g0465041 RchiOBHm_Chr6g0290621
rosa_laevigata	RLG00000024660
rosa_multiflora	Rmu_sc0002119.1_g000016 Rmu_sc0003072.1_g000002 Rmu_sc0004362.1_g000019 Rmu_sc0006588.1_g000005
rosa_roxburghii	Rroxscaffold_6G00415320
rosa_rugosa	Rorug03G0074800 Rorug03G0074800
rosa_samantha	Rh3BG138400 Rh3CG140800 Rh3CG149100 Rh3DG139900 Rh4CG187800 Rh5CG080500
rosa_wichuraiana	Rw3G011320 Rw5G006690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	15, 92, 137, 353
AcoI	YGGCCR	1 cut(s)	393
AcsI	RAATTY	3 cut(s)	198, 312, 524
AcuI	CTGAAG	1 cut(s)	422
AfaI	GTAC	2 cut(s)	332, 480
AfiI	CCNNNNNNNGG	3 cut(s)	74, 248, 325
AflII	CTTAAG	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	131
AjnI	CCWGG	2 cut(s)	256, 395
Alw21I	GWGCWC	1 cut(s)	302
Alw26I	GTCTC	2 cut(s)	14, 45
AlwNI	CAGNNNCTG	1 cut(s)	389
AoxI	GGCC	4 cut(s)	16, 64, 250, 393
ApaI	GGGCCC	1 cut(s)	68
ApeKI	GCWGC	1 cut(s)	419
ApoI	RAATTY	3 cut(s)	198, 312, 524
ArsI	GACNNNNNNTTYG	2 cut(s)	62, 94
AspLEI	GCGC	2 cut(s)	105, 369
AspS9I	GGNCC	3 cut(s)	17, 64, 65
AsuC2I	CCSGG	2 cut(s)	40, 461
AsuHPI	GGTGA	3 cut(s)	151, 231, 356
BaeGI	GKGCMC	1 cut(s)	68
BalI	TGGCCA	1 cut(s)	395
BanII	GRGCYC	3 cut(s)	68, 86, 170
Bbv12I	GWGCWC	1 cut(s)	302
BbvI	GCAGC	1 cut(s)	406
BccI	CCATC	5 cut(s)	28, 120, 232, 261, 332
BceAI	ACGGC	1 cut(s)	497
BciT130I	CCWGG	2 cut(s)	258, 397
BcnI	CCSGG	2 cut(s)	40, 461
BcoDI	GTCTC	2 cut(s)	14, 45
BfmI	CTRYAG	1 cut(s)	420
BfoI	RGCGCY	2 cut(s)	106, 370
BfrI	CTTAAG	1 cut(s)	191
BisI	GCNGC	3 cut(s)	16, 354, 420
BlsI	GCNGC	3 cut(s)	17, 355, 421
BmcAI	AGTACT	1 cut(s)	332
Bme1390I	CCNGG	4 cut(s)	40, 258, 397, 461
BmgT120I	GGNCC	3 cut(s)	17, 64, 65
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	4 cut(s)	40, 258, 397, 461
BmrI	ACTGGG	2 cut(s)	71, 131
BmuI	ACTGGG	2 cut(s)	71, 131
BpmI	CTGGAG	1 cut(s)	347
BpuEI	CTTGAG	1 cut(s)	184
BpuMI	CCSGG	2 cut(s)	40, 461
BsaJI	CCNNGG	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 248, 325
Bse1I	ACTGG	2 cut(s)	66, 126
BseBI	CCWGG	2 cut(s)	258, 397
BseDI	CCNNGG	1 cut(s)	370
BseGI	GGATG	3 cut(s)	224, 253, 453
BseLI	CCNNNNNNNGG	3 cut(s)	74, 248, 325
BseNI	ACTGG	2 cut(s)	66, 126
BseSI	GKGCMC	1 cut(s)	68
BseXI	GCAGC	1 cut(s)	406
Bsh1285I	CGRYCG	1 cut(s)	96
BshFI	GGCC	4 cut(s)	18, 66, 252, 395
BsiEI	CGRYCG	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	302
BsiSI	CCGG	2 cut(s)	40, 460
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	3 cut(s)	74, 248, 325
BsmAI	GTCTC	2 cut(s)	14, 45
BsmFI	GGGAC	1 cut(s)	22
BsnI	GGCC	4 cut(s)	18, 66, 252, 395
Bsp120I	GGGCCC	1 cut(s)	64
Bsp1286I	GDGCHC	4 cut(s)	68, 86, 170, 302
Bsp143I	GATC	1 cut(s)	45
Bsp19I	CCATGG	1 cut(s)	370
BspACI	CCGC	4 cut(s)	15, 92, 137, 353
BspANI	GGCC	4 cut(s)	18, 66, 252, 395
BspHI	TCATGA	1 cut(s)	405
BspLI	GGNNCC	1 cut(s)	66
BspMAI	CTGCAG	1 cut(s)	424
BspTI	CTTAAG	1 cut(s)	191
BsrI	ACTGG	2 cut(s)	66, 126
BssECI	CCNNGG	1 cut(s)	370
BssMI	GATC	1 cut(s)	45
BssT1I	CCWWGG	1 cut(s)	370
Bst2UI	CCWGG	2 cut(s)	258, 397
Bst4CI	ACNGT	2 cut(s)	335, 391
BstAFI	CTTAAG	1 cut(s)	191
BstDEI	CTNAG	2 cut(s)	209, 303
BstDSI	CCRYGG	1 cut(s)	370
BstENI	CCTNNNNNAGG	1 cut(s)	246
BstF5I	GGATG	3 cut(s)	224, 253, 453
BstH2I	RGCGCY	2 cut(s)	106, 370
BstHHI	GCGC	2 cut(s)	105, 369
BstKTI	GATC	1 cut(s)	48
BstMAI	GTCTC	2 cut(s)	14, 45
BstMBI	GATC	1 cut(s)	45
BstMCI	CGRYCG	1 cut(s)	96
BstNI	CCWGG	2 cut(s)	258, 397
BstSCI	CCNGG	4 cut(s)	38, 256, 395, 459
BstSFI	CTRYAG	1 cut(s)	420
BstSLI	GKGCMC	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	406
BsuRI	GGCC	4 cut(s)	18, 66, 252, 395
BtgI	CCRYGG	1 cut(s)	370
BtgZI	GCGATG	1 cut(s)	98
BtsCI	GGATG	3 cut(s)	224, 253, 453
CaiI	CAGNNNCTG	1 cut(s)	389
CciI	TCATGA	1 cut(s)	405
CfoI	GCGC	2 cut(s)	105, 369
Cfr13I	GGNCC	3 cut(s)	17, 64, 65
Csp6I	GTAC	2 cut(s)	331, 479
CviAII	CATG	3 cut(s)	371, 406, 570
CviQI	GTAC	2 cut(s)	331, 479
DdeI	CTNAG	2 cut(s)	209, 303
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
DraI	TTTAAA	1 cut(s)	468
EaeI	YGGCCR	1 cut(s)	393
Eco130I	CCWWGG	1 cut(s)	370
Eco24I	GRGCYC	3 cut(s)	68, 86, 170
Eco57I	CTGAAG	1 cut(s)	422
EcoNI	CCTNNNNNAGG	1 cut(s)	246
EcoRII	CCWGG	2 cut(s)	256, 395
EcoT14I	CCWWGG	1 cut(s)	370
EcoT38I	GRGCYC	3 cut(s)	68, 86, 170
ErhI	CCWWGG	1 cut(s)	370
FaeI	CATG	3 cut(s)	374, 409, 573
FaiI	YATR	7 cut(s)	59, 218, 360, 362, 372, 407, 571
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	3 cut(s)	370, 405, 569
Fnu4HI	GCNGC	3 cut(s)	16, 354, 420
FokI	GGATG	3 cut(s)	211, 240, 440
FriOI	GRGCYC	3 cut(s)	68, 86, 170
Fsp4HI	GCNGC	3 cut(s)	16, 354, 420
GlaI	GCGC	2 cut(s)	104, 368
GluI	GCNGC	3 cut(s)	16, 354, 420
GsuI	CTGGAG	1 cut(s)	347
HaeII	RGCGCY	2 cut(s)	106, 370
HaeIII	GGCC	4 cut(s)	18, 66, 252, 395
HapII	CCGG	2 cut(s)	40, 460
HhaI	GCGC	2 cut(s)	105, 369
Hin1II	CATG	3 cut(s)	374, 409, 573
Hin6I	GCGC	2 cut(s)	103, 367
HinP1I	GCGC	2 cut(s)	103, 367
HinfI	GANTC	1 cut(s)	205
HpaII	CCGG	2 cut(s)	40, 460
HphI	GGTGA	3 cut(s)	151, 231, 356
Hpy166II	GTNNAC	2 cut(s)	188, 575
Hpy188I	TCNGA	2 cut(s)	50, 385
Hpy188III	TCNNGA	2 cut(s)	406, 440
Hpy8I	GTNNAC	2 cut(s)	188, 575
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	2 cut(s)	335, 391
HpyCH4V	TGCA	3 cut(s)	422, 430, 514
HpyF3I	CTNAG	2 cut(s)	209, 303
Hsp92II	CATG	3 cut(s)	374, 409, 573
HspAI	GCGC	2 cut(s)	103, 367
Kzo9I	GATC	1 cut(s)	45
Lsp1109I	GCAGC	1 cut(s)	406
MaeIII	GTNAC	2 cut(s)	260, 344
MalI	GATC	1 cut(s)	47
MboI	GATC	1 cut(s)	45
MboII	GAAGA	1 cut(s)	481
MfeI	CAATTG	1 cut(s)	413
MhlI	GDGCHC	4 cut(s)	68, 86, 170, 302
MlsI	TGGCCA	1 cut(s)	395
MluCI	AATT	6 cut(s)	198, 312, 413, 509, 516, 524
MluNI	TGGCCA	1 cut(s)	395
MnlI	CCTC	2 cut(s)	402, 461
Mox20I	TGGCCA	1 cut(s)	395
MscI	TGGCCA	1 cut(s)	395
MseI	TTAA	2 cut(s)	192, 467
Msp20I	TGGCCA	1 cut(s)	395
MspCI	CTTAAG	1 cut(s)	191
MspI	CCGG	2 cut(s)	40, 460
MspR9I	CCNGG	4 cut(s)	40, 258, 397, 461
MunI	CAATTG	1 cut(s)	413
MvaI	CCWGG	2 cut(s)	258, 397
NciI	CCSGG	2 cut(s)	40, 461
NcoI	CCATGG	1 cut(s)	370
NdeII	GATC	1 cut(s)	45
NlaIII	CATG	3 cut(s)	374, 409, 573
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	1 cut(s)	344
PagI	TCATGA	1 cut(s)	405
PfeI	GAWTC	1 cut(s)	205
PkrI	GCNGC	3 cut(s)	17, 355, 421
Psp6I	CCWGG	2 cut(s)	256, 395
PspGI	CCWGG	2 cut(s)	256, 395
PspN4I	GGNNCC	1 cut(s)	66
PspOMI	GGGCCC	1 cut(s)	64
PspPI	GGNCC	3 cut(s)	17, 64, 65
PstI	CTGCAG	1 cut(s)	424
PstNI	CAGNNNCTG	1 cut(s)	389
RsaI	GTAC	2 cut(s)	332, 480
RsaNI	GTAC	2 cut(s)	331, 479
SaqAI	TTAA	2 cut(s)	192, 467
SatI	GCNGC	3 cut(s)	16, 354, 420
Sau3AI	GATC	1 cut(s)	45
Sau96I	GGNCC	3 cut(s)	17, 64, 65
ScaI	AGTACT	1 cut(s)	332
ScrFI	CCNGG	4 cut(s)	40, 258, 397, 461
SduI	GDGCHC	4 cut(s)	68, 86, 170, 302
SetI	ASST	5 cut(s)	244, 262, 321, 453, 480
SfcI	CTRYAG	1 cut(s)	420
SmlI	CTYRAG	2 cut(s)	163, 191
SmoI	CTYRAG	2 cut(s)	163, 191
Sse9I	AATT	6 cut(s)	198, 312, 413, 509, 516, 524
SsiI	CCGC	4 cut(s)	15, 92, 137, 353
SspI	AATATT	1 cut(s)	233
StyD4I	CCNGG	4 cut(s)	38, 256, 395, 459
StyI	CCWWGG	1 cut(s)	370
TaaI	ACNGT	2 cut(s)	335, 391
TaqI	TCGA	2 cut(s)	107, 203
TasI	AATT	6 cut(s)	198, 312, 413, 509, 516, 524
TatI	WGTACW	1 cut(s)	330
TauI	GCSGC	2 cut(s)	18, 356
TfiI	GAWTC	1 cut(s)	205
Tru1I	TTAA	2 cut(s)	192, 467
Tru9I	TTAA	2 cut(s)	192, 467
TseFI	GTSAC	1 cut(s)	344
TseI	GCWGC	1 cut(s)	419
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	1 cut(s)	394
Vha464I	CTTAAG	1 cut(s)	191
XagI	CCTNNNNNAGG	1 cut(s)	246
XapI	RAATTY	3 cut(s)	198, 312, 524
ZrmI	AGTACT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.