Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002119.1

Orthogroup ID

OG0002672

Physical Location & Seq

Genomic Coordinates Forward (+)

80693 .. 81209

Gene Structure 517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002119.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atggatagtctcggtggcccatcaaacaccaacaagtcccggttgatcggagactacatactgggcccgaaagtcgggtcgggctcgttcgccgtcgtgtggcgctcgacccatcgccaactgggtattgaagttgcggtgaaggagattgacaagaaacacttgagcccaaaagtcagcgagagtttacttaaggaaatttcgattcttagcaccataaaccatcccaatattattcacctttttgaggccatccagaccaaggaaagaatttaccttgtgctggagtactgtgatggtggtgacttggcggcttatatacagcgccatgggaaagtttcagaaactgtggccaggcacttcatgaggcaattgggtattgtgtgctatgctccgtttgattgtttttggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005776 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0061919

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04139 ko04140 ko04150 ko04212 map04136 map04138 map04139 map04140 map04150 map04212

Pfam Domains

Protein Families

Pkinase

Protein Analysis

137

Amino Acids

15.37

Weight (kDa)

8.45

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37840 AT2G37840 AT2G37840 AT3G53930 AT3G53930 AT3G53930 AT3G53930 AT3G53930
fragaria_vesca	FvH4_6g12940 FvH4_6g12940 FvH4_6g12940 FvH4_6g12940 FvH4_6g12940
malus_domestica	MD04G1136900.v1.1 MD08G1035900.v1.1 MD12G1151100.v1.1
prunus_persica	Prupe.6G262900_v2.0.a1 Prupe.6G262900_v2.0.a1 Prupe.6G262900_v2.0.a1
pyrus_communis	pycom04g12420 pycom12g14500 pycom12g14540
rosa_chinensis	RchiOBHm_Chr3g0465041 RchiOBHm_Chr6g0290621
rosa_laevigata	RLG00000024660
rosa_multiflora	Rmu_sc0002119.1_g000016 Rmu_sc0003072.1_g000002 Rmu_sc0004362.1_g000019 Rmu_sc0006588.1_g000005
rosa_roxburghii	Rroxscaffold_6G00415320
rosa_rugosa	Rorug03G0074800 Rorug03G0074800
rosa_samantha	Rh3BG138400 Rh3CG140800 Rh3CG149100 Rh3DG139900 Rh4CG187800 Rh5CG080500
rosa_wichuraiana	Rw3G011320 Rw5G006690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	137, 311
AcoI	YGGCCR	1 cut(s)	351
AcsI	RAATTY	2 cut(s)	198, 270
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	5 cut(s)	74, 99, 247, 262, 283
AflII	CTTAAG	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	131
AjnI	CCWGG	1 cut(s)	353
Alw26I	GTCTC	2 cut(s)	14, 45
AlwNI	CAGNNNCTG	1 cut(s)	347
AoxI	GGCC	4 cut(s)	16, 64, 249, 351
ApaI	GGGCCC	1 cut(s)	68
ApoI	RAATTY	2 cut(s)	198, 270
ArsI	GACNNNNNNTTYG	2 cut(s)	62, 94
AspLEI	GCGC	2 cut(s)	105, 327
AspS9I	GGNCC	3 cut(s)	17, 64, 65
AsuC2I	CCSGG	1 cut(s)	40
AsuHPI	GGTGA	3 cut(s)	151, 230, 314
BaeGI	GKGCMC	1 cut(s)	68
BalI	TGGCCA	1 cut(s)	353
BanII	GRGCYC	3 cut(s)	68, 86, 170
BccI	CCATC	5 cut(s)	28, 120, 231, 260, 290
BceAI	ACGGC	1 cut(s)	77
BciT130I	CCWGG	1 cut(s)	355
BcnI	CCSGG	1 cut(s)	40
BcoDI	GTCTC	2 cut(s)	14, 45
BfoI	RGCGCY	2 cut(s)	106, 328
BfrI	CTTAAG	1 cut(s)	191
BisI	GCNGC	1 cut(s)	312
BlsI	GCNGC	1 cut(s)	313
BmcAI	AGTACT	1 cut(s)	290
Bme1390I	CCNGG	2 cut(s)	40, 355
BmgT120I	GGNCC	3 cut(s)	17, 64, 65
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	2 cut(s)	40, 355
BmrI	ACTGGG	2 cut(s)	71, 131
BmuI	ACTGGG	2 cut(s)	71, 131
BpmI	CTGGAG	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	184
BpuMI	CCSGG	1 cut(s)	40
BsaJI	CCNNGG	2 cut(s)	261, 328
Bsc4I	CCNNNNNNNGG	5 cut(s)	74, 99, 247, 262, 283
Bse1I	ACTGG	2 cut(s)	66, 126
BseBI	CCWGG	1 cut(s)	355
BseDI	CCNNGG	2 cut(s)	261, 328
BseGI	GGATG	2 cut(s)	223, 252
BseLI	CCNNNNNNNGG	5 cut(s)	74, 99, 247, 262, 283
BseNI	ACTGG	2 cut(s)	66, 126
BseSI	GKGCMC	1 cut(s)	68
BshFI	GGCC	4 cut(s)	18, 66, 251, 353
BsiSI	CCGG	1 cut(s)	40
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	5 cut(s)	74, 99, 247, 262, 283
BsmAI	GTCTC	2 cut(s)	14, 45
BsmFI	GGGAC	1 cut(s)	22
BsnI	GGCC	4 cut(s)	18, 66, 251, 353
Bsp120I	GGGCCC	1 cut(s)	64
Bsp1286I	GDGCHC	3 cut(s)	68, 86, 170
Bsp143I	GATC	1 cut(s)	45
Bsp19I	CCATGG	1 cut(s)	328
BspACI	CCGC	2 cut(s)	137, 311
BspANI	GGCC	4 cut(s)	18, 66, 251, 353
BspHI	TCATGA	1 cut(s)	363
BspLI	GGNNCC	1 cut(s)	66
BspTI	CTTAAG	1 cut(s)	191
BsrI	ACTGG	2 cut(s)	66, 126
BssECI	CCNNGG	2 cut(s)	261, 328
BssMI	GATC	1 cut(s)	45
BssT1I	CCWWGG	2 cut(s)	261, 328
Bst2UI	CCWGG	1 cut(s)	355
Bst4CI	ACNGT	2 cut(s)	293, 349
BstAFI	CTTAAG	1 cut(s)	191
BstDEI	CTNAG	1 cut(s)	209
BstDSI	CCRYGG	1 cut(s)	328
BstENI	CCTNNNNNAGG	1 cut(s)	245
BstF5I	GGATG	2 cut(s)	223, 252
BstH2I	RGCGCY	2 cut(s)	106, 328
BstHHI	GCGC	2 cut(s)	105, 327
BstKTI	GATC	1 cut(s)	48
BstMAI	GTCTC	2 cut(s)	14, 45
BstMBI	GATC	1 cut(s)	45
BstNI	CCWGG	1 cut(s)	355
BstSCI	CCNGG	2 cut(s)	38, 353
BstSLI	GKGCMC	1 cut(s)	68
BsuRI	GGCC	4 cut(s)	18, 66, 251, 353
BtgI	CCRYGG	1 cut(s)	328
BtgZI	GCGATG	1 cut(s)	98
BtsCI	GGATG	2 cut(s)	223, 252
CaiI	CAGNNNCTG	1 cut(s)	347
CciI	TCATGA	1 cut(s)	363
CfoI	GCGC	2 cut(s)	105, 327
Cfr13I	GGNCC	3 cut(s)	17, 64, 65
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	2 cut(s)	329, 364
CviJI	RGCY	7 cut(s)	18, 66, 84, 168, 251, 314, 353
CviKI_1	RGCY	7 cut(s)	18, 66, 84, 168, 251, 314, 353
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	1 cut(s)	209
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
EaeI	YGGCCR	1 cut(s)	351
Eco130I	CCWWGG	2 cut(s)	261, 328
Eco24I	GRGCYC	3 cut(s)	68, 86, 170
EcoNI	CCTNNNNNAGG	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	353
EcoT14I	CCWWGG	2 cut(s)	261, 328
EcoT38I	GRGCYC	3 cut(s)	68, 86, 170
ErhI	CCWWGG	2 cut(s)	261, 328
FaeI	CATG	2 cut(s)	332, 367
FaiI	YATR	7 cut(s)	59, 218, 318, 320, 330, 365, 390
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	2 cut(s)	328, 363
Fnu4HI	GCNGC	1 cut(s)	312
FokI	GGATG	2 cut(s)	210, 239
FriOI	GRGCYC	3 cut(s)	68, 86, 170
Fsp4HI	GCNGC	1 cut(s)	312
GlaI	GCGC	2 cut(s)	104, 326
GluI	GCNGC	1 cut(s)	312
GsuI	CTGGAG	1 cut(s)	305
HaeII	RGCGCY	2 cut(s)	106, 328
HaeIII	GGCC	4 cut(s)	18, 66, 251, 353
HapII	CCGG	1 cut(s)	40
HhaI	GCGC	2 cut(s)	105, 327
Hin1II	CATG	2 cut(s)	332, 367
Hin6I	GCGC	2 cut(s)	103, 325
HinP1I	GCGC	2 cut(s)	103, 325
HinfI	GANTC	1 cut(s)	205
HpaII	CCGG	1 cut(s)	40
HphI	GGTGA	3 cut(s)	151, 230, 314
Hpy166II	GTNNAC	1 cut(s)	188
Hpy188I	TCNGA	2 cut(s)	50, 343
Hpy188III	TCNNGA	2 cut(s)	256, 364
Hpy8I	GTNNAC	1 cut(s)	188
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	2 cut(s)	293, 349
HpyF3I	CTNAG	1 cut(s)	209
Hsp92II	CATG	2 cut(s)	332, 367
HspAI	GCGC	2 cut(s)	103, 325
Kzo9I	GATC	1 cut(s)	45
LmnI	GCTCC	1 cut(s)	397
LpnPI	CCDG	7 cut(s)	47, 53, 107, 269, 269, 340, 367
MaeIII	GTNAC	1 cut(s)	302
MalI	GATC	1 cut(s)	47
MboI	GATC	1 cut(s)	45
MfeI	CAATTG	1 cut(s)	371
MhlI	GDGCHC	3 cut(s)	68, 86, 170
MlsI	TGGCCA	1 cut(s)	353
MluCI	AATT	3 cut(s)	198, 270, 371
MluNI	TGGCCA	1 cut(s)	353
MnlI	CCTC	2 cut(s)	241, 360
Mox20I	TGGCCA	1 cut(s)	353
MscI	TGGCCA	1 cut(s)	353
MseI	TTAA	1 cut(s)	192
Msp20I	TGGCCA	1 cut(s)	353
MspCI	CTTAAG	1 cut(s)	191
MspI	CCGG	1 cut(s)	40
MspR9I	CCNGG	2 cut(s)	40, 355
MunI	CAATTG	1 cut(s)	371
MvaI	CCWGG	1 cut(s)	355
NciI	CCSGG	1 cut(s)	40
NcoI	CCATGG	1 cut(s)	328
NdeII	GATC	1 cut(s)	45
NlaIII	CATG	2 cut(s)	332, 367
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	1 cut(s)	302
PagI	TCATGA	1 cut(s)	363
PfeI	GAWTC	1 cut(s)	205
PkrI	GCNGC	1 cut(s)	313
Psp6I	CCWGG	1 cut(s)	353
PspGI	CCWGG	1 cut(s)	353
PspN4I	GGNNCC	1 cut(s)	66
PspOMI	GGGCCC	1 cut(s)	64
PspPI	GGNCC	3 cut(s)	17, 64, 65
PstNI	CAGNNNCTG	1 cut(s)	347
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	1 cut(s)	312
Sau3AI	GATC	1 cut(s)	45
Sau96I	GGNCC	3 cut(s)	17, 64, 65
ScaI	AGTACT	1 cut(s)	290
ScrFI	CCNGG	2 cut(s)	40, 355
SduI	GDGCHC	3 cut(s)	68, 86, 170
SetI	ASST	2 cut(s)	243, 279
SmlI	CTYRAG	2 cut(s)	163, 191
SmoI	CTYRAG	2 cut(s)	163, 191
Sse9I	AATT	3 cut(s)	198, 270, 371
SsiI	CCGC	2 cut(s)	137, 311
SspI	AATATT	1 cut(s)	232
StyD4I	CCNGG	2 cut(s)	38, 353
StyI	CCWWGG	2 cut(s)	261, 328
TaaI	ACNGT	2 cut(s)	293, 349
TaqI	TCGA	2 cut(s)	107, 203
TasI	AATT	3 cut(s)	198, 270, 371
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	1 cut(s)	314
TfiI	GAWTC	1 cut(s)	205
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TseFI	GTSAC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	302
TspDTI	ATGAA	1 cut(s)	352
TspGWI	ACGGA	1 cut(s)	384
Vha464I	CTTAAG	1 cut(s)	191
XagI	CCTNNNNNAGG	1 cut(s)	245
XapI	RAATTY	2 cut(s)	198, 270
ZrmI	AGTACT	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.