Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000166

Physical Location & Seq

Genomic Coordinates Reverse (-)

5870438 .. 5871704

Gene Structure 1267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0074800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCCATCCCAAGAACAAGAAGCATTGGAAGCGTTCAAGGATGCGCAAGAAATGCACATGTATGCAGTGTGGGCTCTTCCACCCACACATGTGCTCCCACGAATCAAGACGGTGATGGAGGGCCTACGGGCCGAATTCGGTGGGCCTGAAATCGAACCTCACGTCACCGTCTTAGGATCCATGTTAAGGACGGAAGAAGATGCGATCCAACAATTCAAAGATGCTTGTAACATTATCACCCGTTTTGAATGTAACGTCGATCACATTGAAACTAGTCGGTTTTTTTACCAGTGTGTCTCCCTCATCATTGATCCAATCGAAGATTTATGGGGTGAAATCGGGCGCTTTGTTAGGATCTTCGAACACACTTTCCCTTGTTGTCCACATTTGAGCCTCCTTTATGGGTATCTAACAGATGAAGAGAAAAAAAGAGCTAAAGAGAAAGTTACTACTATCGATGAGGGCTTTGCTAGCCTTAGCTTTGATGTTACTCGCTTTGTATTATGCAAGATGAACATCCAAGATAAATCTCAACACTCTTGGGAGAAGATTCTGGCAATTGACCTCCAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0009405 GO:0009847 GO:0009987 GO:0012501 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044409 GO:0044419 GO:0048102 GO:0051701 GO:0051704 GO:0051828 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04139 ko04140 ko04150 ko04212 map04136 map04138 map04139 map04140 map04150 map04212

Pfam Domains

Protein Families

Pkinase

Protein Analysis

191

Amino Acids

22.1

Weight (kDa)

4.99

Isoelectric Point (pI)

64.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000166)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica	MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica	Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis	pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis	RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata	RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora	Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii	Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa	Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha	Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana	Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	45
AclWI	GGATC	5 cut(s)	171, 184, 199, 305, 362
AcsI	RAATTY	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	186
AflIII	ACRYGT	2 cut(s)	57, 88
AgsI	TTSAA	4 cut(s)	37, 217, 248, 269
AhlI	ACTAGT	1 cut(s)	272
AjiI	CACGTC	1 cut(s)	163
AleI	CACNNNNGTG	1 cut(s)	89
AloI	GAACNNNNNNTCC	2 cut(s)	354, 386
AluBI	AGCT	2 cut(s)	434, 480
AluI	AGCT	2 cut(s)	434, 480
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	1 cut(s)	301
AlwI	GGATC	5 cut(s)	171, 184, 199, 305, 362
AoxI	GGCC	3 cut(s)	121, 129, 143
ApoI	RAATTY	1 cut(s)	134
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
AspLEI	GCGC	2 cut(s)	46, 345
AspS9I	GGNCC	3 cut(s)	121, 129, 143
AsuHPI	GGTGA	4 cut(s)	124, 157, 229, 344
AsuII	TTCGAA	1 cut(s)	360
AsuNHI	GCTAGC	1 cut(s)	470
BamHI	GGATCC	1 cut(s)	176
BanII	GRGCYC	1 cut(s)	76
Bbv12I	GWGCWC	1 cut(s)	96
BccI	CCATC	2 cut(s)	13, 109
BcoDI	GTCTC	1 cut(s)	301
BcuI	ACTAGT	1 cut(s)	272
BfaI	CTAG	2 cut(s)	273, 471
BfoI	RGCGCY	1 cut(s)	346
BmgBI	CACGTC	1 cut(s)	163
BmgT120I	GGNCC	3 cut(s)	121, 129, 143
BmiI	GGNNCC	1 cut(s)	178
BmsI	GCATC	3 cut(s)	31, 190, 211
BmtI	GCTAGC	1 cut(s)	474
Bpu10I	CCTNAGC	1 cut(s)	476
Bpu14I	TTCGAA	1 cut(s)	360
Bsa29I	ATCGAT	1 cut(s)	456
BsaBI	GATNNNNATC	1 cut(s)	515
BsaXI	ACNNNNNCTCC	2 cut(s)	78, 108
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse1I	ACTGG	1 cut(s)	289
Bse8I	GATNNNNATC	1 cut(s)	515
BseCI	ATCGAT	1 cut(s)	456
BseGI	GGATG	3 cut(s)	5, 46, 516
BseJI	GATNNNNATC	1 cut(s)	515
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseNI	ACTGG	1 cut(s)	289
BshFI	GGCC	3 cut(s)	123, 131, 145
BshVI	ATCGAT	1 cut(s)	456
BsiHKAI	GWGCWC	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmAI	GTCTC	1 cut(s)	301
BsnI	GGCC	3 cut(s)	123, 131, 145
Bsp119I	TTCGAA	1 cut(s)	360
Bsp1286I	GDGCHC	2 cut(s)	76, 96
Bsp143I	GATC	5 cut(s)	176, 204, 259, 310, 354
BspANI	GGCC	3 cut(s)	123, 131, 145
BspDI	ATCGAT	1 cut(s)	456
BspLI	GGNNCC	1 cut(s)	178
BspOI	GCTAGC	1 cut(s)	474
BspPI	GGATC	5 cut(s)	171, 184, 199, 305, 362
BspQI	GCTCTTC	1 cut(s)	81
BspT104I	TTCGAA	1 cut(s)	360
BsrI	ACTGG	1 cut(s)	289
BssMI	GATC	5 cut(s)	176, 204, 259, 310, 354
Bst4CI	ACNGT	2 cut(s)	112, 169
Bst6I	CTCTTC	2 cut(s)	81, 414
BstAPI	GCANNNNNTGC	1 cut(s)	52
BstBI	TTCGAA	1 cut(s)	360
BstC8I	GCNNGC	1 cut(s)	472
BstDEI	CTNAG	2 cut(s)	172, 476
BstF5I	GGATG	3 cut(s)	5, 46, 516
BstH2I	RGCGCY	1 cut(s)	346
BstHHI	GCGC	2 cut(s)	46, 345
BstKTI	GATC	5 cut(s)	179, 207, 262, 313, 357
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	5 cut(s)	176, 204, 259, 310, 354
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 52, 71, 471
BstNSI	RCATGY	2 cut(s)	61, 92
BstX2I	RGATCY	2 cut(s)	176, 354
BstYI	RGATCY	2 cut(s)	176, 354
Bsu15I	ATCGAT	1 cut(s)	456
BsuRI	GGCC	3 cut(s)	123, 131, 145
BsuTUI	ATCGAT	1 cut(s)	456
BtrI	CACGTC	1 cut(s)	163
BtsCI	GGATG	3 cut(s)	5, 46, 516
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	2 cut(s)	72, 296
Cac8I	GCNNGC	1 cut(s)	472
CfoI	GCGC	2 cut(s)	46, 345
Cfr13I	GGNCC	3 cut(s)	121, 129, 143
ClaI	ATCGAT	1 cut(s)	456
CviAII	CATG	3 cut(s)	58, 89, 181
CviJI	RGCY	9 cut(s)	74, 123, 131, 145, 393, 434, 465, 474, 480
CviKI_1	RGCY	9 cut(s)	74, 123, 131, 145, 393, 434, 465, 474, 480
DdeI	CTNAG	2 cut(s)	172, 476
DpnI	GATC	5 cut(s)	178, 206, 261, 312, 356
DpnII	GATC	5 cut(s)	176, 204, 259, 310, 354
Eam1104I	CTCTTC	2 cut(s)	81, 414
EarI	CTCTTC	2 cut(s)	81, 414
Eco24I	GRGCYC	1 cut(s)	76
EcoO109I	RGGNCCY	1 cut(s)	121
EcoRI	GAATTC	1 cut(s)	134
EcoT38I	GRGCYC	1 cut(s)	76
FaeI	CATG	3 cut(s)	61, 92, 184
FaiI	YATR	8 cut(s)	59, 63, 90, 182, 328, 402, 505, 574
FatI	CATG	3 cut(s)	57, 88, 180
FokI	GGATG	2 cut(s)	53, 503
FriOI	GRGCYC	1 cut(s)	76
FspBI	CTAG	2 cut(s)	273, 471
FspI	TGCGCA	1 cut(s)	45
GlaI	GCGC	2 cut(s)	45, 344
HaeII	RGCGCY	1 cut(s)	346
HaeIII	GGCC	3 cut(s)	123, 131, 145
HhaI	GCGC	2 cut(s)	46, 345
Hin1II	CATG	3 cut(s)	61, 92, 184
Hin6I	GCGC	2 cut(s)	44, 343
HinP1I	GCGC	2 cut(s)	44, 343
HinfI	GANTC	2 cut(s)	102, 550
HphI	GGTGA	4 cut(s)	124, 157, 229, 344
Hpy166II	GTNNAC	1 cut(s)	383
Hpy188III	TCNNGA	1 cut(s)	106
Hpy8I	GTNNAC	1 cut(s)	383
Hpy99I	CGWCG	1 cut(s)	260
HpyCH4III	ACNGT	2 cut(s)	112, 169
HpyCH4IV	ACGT	2 cut(s)	162, 255
HpyCH4V	TGCA	3 cut(s)	55, 65, 507
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 52, 71, 471
HpyF3I	CTNAG	2 cut(s)	172, 476
HpySE526I	ACGT	2 cut(s)	162, 255
Hsp92II	CATG	3 cut(s)	61, 92, 184
HspAI	GCGC	2 cut(s)	44, 343
Kzo9I	GATC	5 cut(s)	176, 204, 259, 310, 354
LguI	GCTCTTC	1 cut(s)	81
LmnI	GCTCC	1 cut(s)	99
LpnPI	CCDG	3 cut(s)	159, 302, 539
LweI	GCATC	3 cut(s)	31, 190, 211
MaeI	CTAG	2 cut(s)	273, 471
MaeII	ACGT	2 cut(s)	162, 255
MaeIII	GTNAC	5 cut(s)	163, 227, 251, 445, 487
MalI	GATC	5 cut(s)	178, 206, 261, 312, 356
MboI	GATC	5 cut(s)	176, 204, 259, 310, 354
MboII	GAAGA	7 cut(s)	68, 206, 209, 332, 349, 431, 559
MfeI	CAATTG	1 cut(s)	558
MflI	RGATCY	2 cut(s)	176, 354
MhlI	GDGCHC	2 cut(s)	76, 96
MluCI	AATT	3 cut(s)	134, 212, 558
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	6 cut(s)	112, 168, 311, 404, 454, 575
MseI	TTAA	1 cut(s)	185
MslI	CAYNNNNRTG	2 cut(s)	60, 89
MunI	CAATTG	1 cut(s)	558
MwoI	GCNNNNNNNGC	4 cut(s)	29, 52, 71, 471
NdeII	GATC	5 cut(s)	176, 204, 259, 310, 354
NheI	GCTAGC	1 cut(s)	470
NlaIII	CATG	3 cut(s)	61, 92, 184
NlaIV	GGNNCC	1 cut(s)	178
NmuCI	GTSAC	1 cut(s)	163
NsbI	TGCGCA	1 cut(s)	45
NspI	RCATGY	2 cut(s)	61, 92
NspV	TTCGAA	1 cut(s)	360
OliI	CACNNNNGTG	1 cut(s)	89
PciI	ACATGT	2 cut(s)	57, 88
PciSI	GCTCTTC	1 cut(s)	81
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PfeI	GAWTC	2 cut(s)	102, 550
PscI	ACATGT	2 cut(s)	57, 88
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	3 cut(s)	121, 129, 143
PsuI	RGATCY	2 cut(s)	176, 354
RseI	CAYNNNNRTG	2 cut(s)	60, 89
SapI	GCTCTTC	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	185
Sau3AI	GATC	5 cut(s)	176, 204, 259, 310, 354
Sau96I	GGNCC	3 cut(s)	121, 129, 143
SduI	GDGCHC	2 cut(s)	76, 96
SetI	ASST	6 cut(s)	160, 165, 258, 436, 482, 567
SfaNI	GCATC	3 cut(s)	31, 190, 211
SfuI	TTCGAA	1 cut(s)	360
SmiMI	CAYNNNNRTG	2 cut(s)	60, 89
SpeI	ACTAGT	1 cut(s)	272
Sse9I	AATT	3 cut(s)	134, 212, 558
SspMI	CTAG	2 cut(s)	273, 471
TaaI	ACNGT	2 cut(s)	112, 169
TaiI	ACGT	2 cut(s)	165, 258
TaqI	TCGA	5 cut(s)	153, 258, 318, 360, 456
TasI	AATT	3 cut(s)	134, 212, 558
TfiI	GAWTC	2 cut(s)	102, 550
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TscAI	CASTG	2 cut(s)	72, 296
TseFI	GTSAC	1 cut(s)	163
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	2 cut(s)	432, 527
TspGWI	ACGGA	1 cut(s)	206
TspRI	CASTG	2 cut(s)	72, 296
XapI	RAATTY	1 cut(s)	134
XceI	RCATGY	2 cut(s)	61, 92
XspI	CTAG	2 cut(s)	273, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.