RchiOBHm_Chr6g0308651

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000166
Physical Location & Seq
Forward (+)
66681184 .. 66683655
2472 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27754

Sequence Viewer

Length: 2301 bp
ATGATATGGTCTATATTTAGAAGTGGCTGTTGTTGGTACGAATACTCTTGGATCATGGCTGCTCTGTTTCACATTCTTCTTCTTTTTCTTGCAATTTATTTCCAAATCTCGTCTTCAACGTCCGACACTCTGAATAAAGGCTCATCCCTATCTGTAGAGAAACCAGATGATGTTTTAACTTCACCGGATGGAGTTTTCACTGCCGGGTTTCACCAAGTCGGCAACAATTCATTTTGCTTTGCTATTTGGTTCAGTGAGCCATTTGACCACTACAAAAACAGAACCATAGTCTGGATGGCCAACCGTGGCCAACCAGTCAATGGCAAACACTCAAAGCTCTCCCTCCTCAAAACTGGTGATCTCATCTTAACCGACGCTGGTCAATCCATTGTTTGGTCCACAGCCACCACTTCAGTCTCACAGGAGAACTTAAGCCTCCACAATTCCGGCAATCTTGTTTTGCTAAACTCGGAGCATGTCATTCTATGGCAGAGCTTTGATCACCCTACTGATACTCTTCTCCCAGACCAACCACTCACTAGAAGCACAATCCTTGTCTCCATGAGAAGCCCGAGCAACTACTCCTCAGGCTTCTACAAGCTCTTCTTTGACCATGACAACCTTCTCCGGCTACTCTTCGACGGTCTTGAGATTTCAAGTGTGTATTGGTTTGAGCCATGGCAAACAGGCCGAACAGCCAGAAGGTCCAAAGACAACAACAGTAGAGTTGCCGTGATGGATTCCTTAGGCAATTTTACTTCATCAGACAAATATACTTTGATCGCTTCCGATTATGGTGCAGCTTCGCAAAGAAGACTGACGGTTGATTGTGATGGAAATGTTCGGTTGCACAGCCGGGCCAAACCCGGAGACAGATGGGTTGTGACAGGGCAGATAATGGAAAATGCTTGTCTGATTCATGGGGTTTGTGGTCCTAATAGTGTGTGTGACTATGAGCCTAGTACTGGAAGAAAATGTTCTTGCATTCCTGGTTACAAAATGGCAAACTATACTGATTGGTATTATGGTTGTGAACCTGAGTTCAATTACACTTGCGGCAGAGGTGAGTCCAGTTTCTTCAAGCTTTCGAGGCTCGACTTTTACGGGTCTCCAAGCTTTTTTGGAGACATATATTTGAGAGTGCCAAAGATCCATCTGTCATCTTATGGATTGCCACAAGAAGAATATAGGTTGCGTTGCTTAGATAAGGTGGTTGAGCTAGATAGGAGCTATGAGAAGAGCCATGTAACTGGTCTAGAGAAATTTTTGCTGTGGTTTGCCTGTGGAGTTGGAGGGTTTGAGATCATTTGTATACTTTTGGTTTTGGGTTTAATAACTCAAAATCGGAGAGATTCCAATGAGGATAAGCACGGCTACCTTCTTGCTGCAACTGGATTCAAAAGGTTTAGCTATGCTGAGCTCAAGAAGGCAACACGGGATTTTAGTCAAGAAATTGGAAGTGGAGCTGGAGGTGTTGTTTACAAAGCTGTATTGGCTGATCATCGAGTTGCAGCGATTAAGAGGCTTAATGAAACTAACCAAGGAGAAGGTGAGTTTTCAGCAGAAGTCAACACTATTGGGAGGCTGAACCATATGCATTTGATTGAGATGTGGGGATATTGCTCGGAGGGAAAGCACGGGCTTCTTGTTTATGAGTACATGGAGCATGGTTCCTTGGCACAAAAGTTACCTTCCAATGTACTTGATTGGGAAAAGAGGTTTGAGATTGCTCTAGGCATTGCAAAGGGTCTTGCTTATTTGCATGAAGAATGTTTGGAGTGGGTTTTACATTGTGATGTTAAGCCTCAAAACATACTCTTGGACTCCAATTATCAACCAAAGGTTGCAGATTTTGGCCTATCCAAGCTACTTAACAGGGATGACCTTAAGAACTGGAGCTTTTCGAGGATACGAGGAACTAGAGGTTACATCGCTCCGGAGTGGGTTTACAATTTGCCTATCACATCCAAAGTGGATGTGTACAGCTATGGGGTTGTGGTGTTGGAGATGGTGACCGGAAAGAACCCGATAAAGCTGGATGTGGATGCCATTGATGGCGAGCAGAGAAGGATGATCGTGTGGGTGAGGGAGAAATTACATAATGGAACTTCTGCTAGTGAAATTGAAGCTCGGATAGGAGACGTCATAGACCCTTCGTTTGAAGGTAAATATGATGTAAAAAATATGGGGATTCTGTTGGAAGTGGCTTTACAATGCGTAGAGGAAGACAGAGACGCGAGACCAACTATGAGCCAAGTCGTTGAGATGCTTGTGCTGCTTGACAAAGACCAAGAGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

766

Amino Acids

86.69

Weight (kDa)

5.85

Isoelectric Point (pI)

39.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 95 - 181 4.8e-24 D-mannose binding lectin
S_locus_glycop PF00954 265 - 334 1e-07 S-locus glycoprotein domain
PK_Tyr_Ser-Thr PF07714 481 - 757 1.5e-39 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 482 - 756 4.6e-50 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 2145
AccB7I CCANNNNNTGG 3 cut(s) 291, 320, 393
AccI GTMKAC 1 cut(s) 1312
AccII CGCG 1 cut(s) 2237
AccIII TCCGGA 1 cut(s) 1936
AciI CCGC 1 cut(s) 1056
AclWI GGATC 2 cut(s) 59, 1144
AcoI YGGCCR 2 cut(s) 297, 307
AcsI RAATTY 1 cut(s) 1262
AcuI CTGAAG 1 cut(s) 396
AcyI GRCGYC 1 cut(s) 2142
AfaI GTAC 5 cut(s) 38, 964, 1658, 1701, 1982
AfiI CCNNNNNNNGG 4 cut(s) 291, 320, 393, 965
AflII CTTAAG 2 cut(s) 430, 1886
AgsI TTSAA 7 cut(s) 117, 657, 1045, 1081, 1399, 2126, 2162
AjnI CCWGG 1 cut(s) 988
Alw21I GWGCWC 1 cut(s) 1422
Alw26I GTCTC 8 cut(s) 421, 562, 864, 1113, 1119, 2133, 2226, 2233
AlwI GGATC 2 cut(s) 59, 1144
Ama87I CYCGRG 1 cut(s) 571
Aor13HI TCCGGA 1 cut(s) 1936
AoxI GGCC 5 cut(s) 297, 307, 688, 858, 1855
ApeKI GCWGC 5 cut(s) 59, 800, 1385, 1511, 2275
ApoI RAATTY 1 cut(s) 1262
ArsI GACNNNNNNTTYG 2 cut(s) 2141, 2173
Asp700I GAANNNNTTC 1 cut(s) 976
AspS9I GGNCC 4 cut(s) 396, 705, 858, 932
AsuC2I CCSGG 3 cut(s) 205, 857, 867
AsuHPI GGTGA 8 cut(s) 174, 203, 368, 494, 1076, 1562, 2023, 2095
AvaI CYCGRG 1 cut(s) 571
AvaII GGWCC 3 cut(s) 396, 705, 932
AxyI CCTNAGG 2 cut(s) 586, 745
BalI TGGCCA 2 cut(s) 299, 309
BanII GRGCYC 1 cut(s) 1422
BarI GAAGNNNNNNTAC 2 cut(s) 2193, 2225
BbsI GAAGAC 3 cut(s) 105, 820, 2232
Bbv12I GWGCWC 1 cut(s) 1422
BbvI GCAGC 5 cut(s) 46, 812, 1372, 1523, 2262
BccI CCATC 8 cut(s) 182, 289, 730, 827, 870, 1161, 2002, 2048
BceAI ACGGC 2 cut(s) 716, 1387
BcgI CGANNNNNNTGC 2 cut(s) 779, 813
BciT130I CCWGG 1 cut(s) 990
BciVI GTATCC 1 cut(s) 1902
BclI TGATCA 2 cut(s) 499, 1498
BcnI CCSGG 3 cut(s) 205, 857, 867
BcoDI GTCTC 8 cut(s) 421, 562, 864, 1113, 1119, 2133, 2226, 2233
BfaI CTAG 7 cut(s) 540, 960, 1220, 1256, 1733, 1920, 2115
BfmI CTRYAG 1 cut(s) 153
BfrI CTTAAG 2 cut(s) 430, 1886
BfuI GTATCC 1 cut(s) 1902
BisI GCNGC 6 cut(s) 60, 801, 1057, 1386, 1512, 2276
BlpI GCTNAGC 1 cut(s) 1416
BlsI GCNGC 6 cut(s) 61, 802, 1058, 1387, 1513, 2277
BmcAI AGTACT 1 cut(s) 964
Bme1390I CCNGG 4 cut(s) 205, 857, 867, 990
Bme18I GGWCC 3 cut(s) 396, 705, 932
BmeT110I CYCGRG 1 cut(s) 571
BmgT120I GGNCC 4 cut(s) 396, 705, 858, 932
BmiI GGNNCC 1 cut(s) 1672
BmrFI CCNGG 4 cut(s) 205, 857, 867, 990
BmsI GCATC 2 cut(s) 2035, 2256
BoxI GACNNNNGTC 1 cut(s) 378
BpiI GAAGAC 3 cut(s) 105, 820, 2232
BpmI CTGGAG 2 cut(s) 1488, 1915
Bpu1102I GCTNAGC 1 cut(s) 1416
BpuEI CTTGAG 2 cut(s) 668, 1406
BpuMI CCSGG 3 cut(s) 205, 857, 867
BsaHI GRCGYC 1 cut(s) 2142
BsaI GGTCTC 2 cut(s) 1113, 2233
BsaJI CCNNGG 4 cut(s) 304, 677, 1540, 1674
BsaWI WCCGGW 3 cut(s) 184, 1936, 2015
BsaXI ACNNNNNCTCC 2 cut(s) 1461, 1491
Bsc4I CCNNNNNNNGG 4 cut(s) 291, 320, 393, 965
Bse1I ACTGG 7 cut(s) 314, 358, 970, 1071, 1255, 1396, 1898
Bse21I CCTNAGG 2 cut(s) 586, 745
Bse3DI GCAATG 1 cut(s) 1737
BseAI TCCGGA 1 cut(s) 1936
BseBI CCWGG 1 cut(s) 990
BseDI CCNNGG 4 cut(s) 304, 677, 1540, 1674
BseGI GGATG 9 cut(s) 143, 193, 300, 1885, 1964, 1981, 2044, 2050, 2076
BseLI CCNNNNNNNGG 4 cut(s) 291, 320, 393, 965
BseMI GCAATG 1 cut(s) 1737
BseMII CTCAG 3 cut(s) 600, 1029, 1407
BseNI ACTGG 7 cut(s) 314, 358, 970, 1071, 1255, 1396, 1898
BseRI GAGGAG 2 cut(s) 335, 574
BseXI GCAGC 5 cut(s) 46, 812, 1372, 1523, 2262
BsgI GTGCAG 1 cut(s) 819
Bsh1236I CGCG 1 cut(s) 2237
BshFI GGCC 5 cut(s) 299, 309, 690, 860, 1857
BsiHKAI GWGCWC 1 cut(s) 1422
BsiHKCI CYCGRG 1 cut(s) 571
BsiSI CCGG 8 cut(s) 185, 204, 447, 628, 856, 867, 1937, 2016
BslI CCNNNNNNNGG 4 cut(s) 291, 320, 393, 965
BsmAI GTCTC 8 cut(s) 421, 562, 864, 1113, 1119, 2133, 2226, 2233
BsmBI CGTCTC 2 cut(s) 2133, 2226
BsmI GAATGC 1 cut(s) 984
BsnI GGCC 5 cut(s) 299, 309, 690, 860, 1857
Bso31I GGTCTC 2 cut(s) 1113, 2233
BsoBI CYCGRG 1 cut(s) 571
Bsp1286I GDGCHC 1 cut(s) 1422
Bsp13I TCCGGA 1 cut(s) 1936
Bsp1407I TGTACA 1 cut(s) 1980
Bsp143I GATC 8 cut(s) 51, 358, 499, 780, 1149, 1302, 1498, 2073
Bsp1720I GCTNAGC 1 cut(s) 1416
Bsp19I CCATGG 1 cut(s) 677
BspACI CCGC 1 cut(s) 1056
BspANI GGCC 5 cut(s) 299, 309, 690, 860, 1857
BspCNI CTCAG 3 cut(s) 599, 1030, 1408
BspEI TCCGGA 1 cut(s) 1936
BspFNI CGCG 1 cut(s) 2237
BspLI GGNNCC 1 cut(s) 1672
BspPI GGATC 2 cut(s) 59, 1144
BspQI GCTCTTC 2 cut(s) 608, 1232
BspTI CTTAAG 2 cut(s) 430, 1886
BspTNI GGTCTC 2 cut(s) 1113, 2233
BsrDI GCAATG 1 cut(s) 1737
BsrGI TGTACA 1 cut(s) 1980
BsrI ACTGG 7 cut(s) 314, 358, 970, 1071, 1255, 1396, 1898
BssECI CCNNGG 4 cut(s) 304, 677, 1540, 1674
BssMI GATC 8 cut(s) 51, 358, 499, 780, 1149, 1302, 1498, 2073
BssNAI GTATAC 1 cut(s) 1313
BssNI GRCGYC 1 cut(s) 2142
BssT1I CCWWGG 3 cut(s) 677, 1540, 1674
Bst1107I GTATAC 1 cut(s) 1313
Bst2UI CCWGG 1 cut(s) 990
Bst4CI ACNGT 4 cut(s) 305, 644, 722, 823
Bst6I CTCTTC 4 cut(s) 522, 608, 641, 1232
BstACI GRCGYC 1 cut(s) 2142
BstAFI CTTAAG 2 cut(s) 430, 1886
BstAUI TGTACA 1 cut(s) 1980
BstC8I GCNNGC 1 cut(s) 2060
BstDEI CTNAG 5 cut(s) 586, 745, 1038, 1201, 1416
BstDSI CCRYGG 2 cut(s) 304, 677
BstEII GGTNACC 1 cut(s) 2011
BstF5I GGATG 9 cut(s) 143, 193, 300, 1885, 1964, 1981, 2044, 2050, 2076
BstFNI CGCG 1 cut(s) 2237
BstKTI GATC 8 cut(s) 54, 361, 502, 783, 1152, 1305, 1501, 2076
BstMAI GTCTC 8 cut(s) 421, 562, 864, 1113, 1119, 2133, 2226, 2233
BstMBI GATC 8 cut(s) 51, 358, 499, 780, 1149, 1302, 1498, 2073
BstMWI GCNNNNNNNGC 3 cut(s) 1090, 1493, 2275
BstNI CCWGG 1 cut(s) 990
BstNSI RCATGY 1 cut(s) 479
BstPAI GACNNNNGTC 1 cut(s) 378
BstPI GGTNACC 1 cut(s) 2011
BstSCI CCNGG 4 cut(s) 203, 855, 865, 988
BstSFI CTRYAG 1 cut(s) 153
BstUI CGCG 1 cut(s) 2237
BstV1I GCAGC 5 cut(s) 46, 812, 1372, 1523, 2262
BstV2I GAAGAC 3 cut(s) 105, 820, 2232
BstX2I RGATCY 1 cut(s) 1149
BstXI CCANNNNNNTGG 1 cut(s) 1250
BstYI RGATCY 1 cut(s) 1149
BstZ17I GTATAC 1 cut(s) 1313
Bsu36I CCTNAGG 2 cut(s) 586, 745
BsuI GTATCC 1 cut(s) 1902
BsuRI GGCC 5 cut(s) 299, 309, 690, 860, 1857
BtgI CCRYGG 2 cut(s) 304, 677
BtgZI GCGATG 1 cut(s) 1915
BtsCI GGATG 9 cut(s) 143, 193, 300, 1885, 1964, 1981, 2044, 2050, 2076
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 2 cut(s) 198, 259
Cac8I GCNNGC 1 cut(s) 2060
Cfr13I GGNCC 4 cut(s) 396, 705, 858, 932
CseI GACGC 2 cut(s) 383, 2243
Csp6I GTAC 5 cut(s) 37, 963, 1657, 1700, 1981
CviQI GTAC 5 cut(s) 37, 963, 1657, 1700, 1981
DdeI CTNAG 5 cut(s) 586, 745, 1038, 1201, 1416
DpnI GATC 8 cut(s) 53, 360, 501, 782, 1151, 1304, 1500, 2075
DpnII GATC 8 cut(s) 51, 358, 499, 780, 1149, 1302, 1498, 2073
EaeI YGGCCR 2 cut(s) 297, 307
Eam1104I CTCTTC 4 cut(s) 522, 608, 641, 1232
EarI CTCTTC 4 cut(s) 522, 608, 641, 1232
Ecl136II GAGCTC 1 cut(s) 1420
Eco130I CCWWGG 3 cut(s) 677, 1540, 1674
Eco24I GRGCYC 1 cut(s) 1422
Eco31I GGTCTC 2 cut(s) 1113, 2233
Eco47I GGWCC 3 cut(s) 396, 705, 932
Eco53kI GAGCTC 1 cut(s) 1420
Eco57I CTGAAG 1 cut(s) 396
Eco81I CCTNAGG 2 cut(s) 586, 745
Eco88I CYCGRG 1 cut(s) 571
Eco91I GGTNACC 1 cut(s) 2011
EcoICRI GAGCTC 1 cut(s) 1420
EcoO65I GGTNACC 1 cut(s) 2011
EcoRII CCWGG 1 cut(s) 988
EcoT14I CCWWGG 3 cut(s) 677, 1540, 1674
EcoT22I ATGCAT 1 cut(s) 1599
EcoT38I GRGCYC 1 cut(s) 1422
ErhI CCWWGG 3 cut(s) 677, 1540, 1674
Esp3I CGTCTC 2 cut(s) 2133, 2226
FalI AAGNNNNNCTT 2 cut(s) 590, 622
FauNDI CATATG 1 cut(s) 1593
FbaI TGATCA 2 cut(s) 499, 1498
FblI GTMKAC 1 cut(s) 1312
Fnu4HI GCNGC 6 cut(s) 60, 801, 1057, 1386, 1512, 2276
FokI GGATG 9 cut(s) 130, 200, 307, 1892, 1951, 1988, 2051, 2057, 2083
FriOI GRGCYC 1 cut(s) 1422
Fsp4HI GCNGC 6 cut(s) 60, 801, 1057, 1386, 1512, 2276
FspBI CTAG 7 cut(s) 540, 960, 1220, 1256, 1733, 1920, 2115
GluI GCNGC 6 cut(s) 60, 801, 1057, 1386, 1512, 2276
GsuI CTGGAG 2 cut(s) 1488, 1915
HaeIII GGCC 5 cut(s) 299, 309, 690, 860, 1857
HapII CCGG 8 cut(s) 185, 204, 447, 628, 856, 867, 1937, 2016
HgaI GACGC 2 cut(s) 383, 2243
Hin1I GRCGYC 1 cut(s) 2142
HincII GTYRAC 1 cut(s) 1570
HindII GTYRAC 1 cut(s) 1570
HindIII AAGCTT 2 cut(s) 1082, 1114
HinfI GANTC 7 cut(s) 740, 916, 1067, 1352, 1395, 1823, 2191
HpaII CCGG 8 cut(s) 185, 204, 447, 628, 856, 867, 1937, 2016
HphI GGTGA 8 cut(s) 174, 203, 368, 494, 1076, 1562, 2023, 2095
Hpy166II GTNNAC 7 cut(s) 399, 1034, 1313, 1480, 1570, 1948, 1981
Hpy188I TCNGA 9 cut(s) 124, 132, 472, 766, 790, 915, 1347, 1627, 2133
Hpy188III TCNNGA 6 cut(s) 292, 647, 1256, 1423, 1448, 1937
Hpy8I GTNNAC 7 cut(s) 399, 1034, 1313, 1480, 1570, 1948, 1981
Hpy99I CGWCG 2 cut(s) 377, 644
HpyAV CCTTC 9 cut(s) 632, 696, 1388, 1420, 1541, 1701, 2061, 2156, 2163
HpyCH4III ACNGT 4 cut(s) 305, 644, 722, 823
HpyCH4IV ACGT 2 cut(s) 119, 2142
HpyF10VI GCNNNNNNNGC 3 cut(s) 1090, 1493, 2275
HpyF3I CTNAG 5 cut(s) 586, 745, 1038, 1201, 1416
HpySE526I ACGT 2 cut(s) 119, 2142
Hsp92I GRCGYC 1 cut(s) 2142
Kpn2I TCCGGA 1 cut(s) 1936
Ksp22I TGATCA 2 cut(s) 499, 1498
Kzo9I GATC 8 cut(s) 51, 358, 499, 780, 1149, 1302, 1498, 2073
LguI GCTCTTC 2 cut(s) 608, 1232
LmnI GCTCC 6 cut(s) 472, 1227, 1463, 1663, 1896, 1939
Lsp1109I GCAGC 5 cut(s) 46, 812, 1372, 1523, 2262
LweI GCATC 2 cut(s) 2035, 2256
MaeI CTAG 7 cut(s) 540, 960, 1220, 1256, 1733, 1920, 2115
MaeII ACGT 2 cut(s) 119, 2142
MaeIII GTNAC 7 cut(s) 883, 947, 992, 1246, 1686, 1925, 2011
MalI GATC 8 cut(s) 53, 360, 501, 782, 1151, 1304, 1500, 2075
MboI GATC 8 cut(s) 51, 358, 499, 780, 1149, 1302, 1498, 2073
MflI RGATCY 1 cut(s) 1149
MhlI GDGCHC 1 cut(s) 1422
MlsI TGGCCA 2 cut(s) 299, 309
MluNI TGGCCA 2 cut(s) 299, 309
MlyI GAGTC 2 cut(s) 1076, 1817
MmeI TCCRAC 4 cut(s) 147, 1270, 1983, 2178
Mox20I TGGCCA 2 cut(s) 299, 309
Mph1103I ATGCAT 1 cut(s) 1599
MroI TCCGGA 1 cut(s) 1936
MroXI GAANNNNTTC 1 cut(s) 976
MscI TGGCCA 2 cut(s) 299, 309
MseI TTAA 9 cut(s) 176, 368, 431, 1331, 1518, 1527, 1800, 1872, 1887
MslI CAYNNNNRTG 1 cut(s) 1794
Msp20I TGGCCA 2 cut(s) 299, 309
MspCI CTTAAG 2 cut(s) 430, 1886
MspI CCGG 8 cut(s) 185, 204, 447, 628, 856, 867, 1937, 2016
MspR9I CCNGG 4 cut(s) 205, 857, 867, 990
Mva1269I GAATGC 1 cut(s) 984
MvaI CCWGG 1 cut(s) 990
MvnI CGCG 1 cut(s) 2237
MwoI GCNNNNNNNGC 3 cut(s) 1090, 1493, 2275
NciI CCSGG 3 cut(s) 205, 857, 867
NcoI CCATGG 1 cut(s) 677
NdeI CATATG 1 cut(s) 1593
NdeII GATC 8 cut(s) 51, 358, 499, 780, 1149, 1302, 1498, 2073
NlaIV GGNNCC 1 cut(s) 1672
NmuCI GTSAC 3 cut(s) 883, 947, 2011
NsiI ATGCAT 1 cut(s) 1599
NspI RCATGY 1 cut(s) 479
PciSI GCTCTTC 2 cut(s) 608, 1232
PcsI WCGNNNNNNNCGW 1 cut(s) 116
PctI GAATGC 1 cut(s) 984
PdmI GAANNNNTTC 1 cut(s) 976
PfeI GAWTC 5 cut(s) 740, 916, 1352, 1395, 2191
PflMI CCANNNNNTGG 3 cut(s) 291, 320, 393
PkrI GCNGC 6 cut(s) 61, 802, 1058, 1387, 1513, 2277
PleI GAGTC 2 cut(s) 1075, 1817
PpsI GAGTC 2 cut(s) 1075, 1817
PshAI GACNNNNGTC 1 cut(s) 378
Psp124BI GAGCTC 1 cut(s) 1422
Psp6I CCWGG 1 cut(s) 988
PspEI GGTNACC 1 cut(s) 2011
PspGI CCWGG 1 cut(s) 988
PspN4I GGNNCC 1 cut(s) 1672
PspPI GGNCC 4 cut(s) 396, 705, 858, 932
PsuI RGATCY 1 cut(s) 1149
RsaI GTAC 5 cut(s) 38, 964, 1658, 1701, 1982
RsaNI GTAC 5 cut(s) 37, 963, 1657, 1700, 1981
RseI CAYNNNNRTG 1 cut(s) 1794
SacI GAGCTC 1 cut(s) 1422
SapI GCTCTTC 2 cut(s) 608, 1232
SaqAI TTAA 9 cut(s) 176, 368, 431, 1331, 1518, 1527, 1800, 1872, 1887
SatI GCNGC 6 cut(s) 60, 801, 1057, 1386, 1512, 2276
Sau3AI GATC 8 cut(s) 51, 358, 499, 780, 1149, 1302, 1498, 2073
Sau96I GGNCC 4 cut(s) 396, 705, 858, 932
ScaI AGTACT 1 cut(s) 964
SchI GAGTC 2 cut(s) 1076, 1817
ScrFI CCNGG 4 cut(s) 205, 857, 867, 990
SduI GDGCHC 1 cut(s) 1422
SfaNI GCATC 2 cut(s) 2035, 2256
SfcI CTRYAG 1 cut(s) 153
SinI GGWCC 3 cut(s) 396, 705, 932
SmiMI CAYNNNNRTG 1 cut(s) 1794
SmlI CTYRAG 4 cut(s) 430, 647, 1421, 1886
SmoI CTYRAG 4 cut(s) 430, 647, 1421, 1886
SsiI CCGC 1 cut(s) 1056
SspMI CTAG 7 cut(s) 540, 960, 1220, 1256, 1733, 1920, 2115
SstI GAGCTC 1 cut(s) 1422
StyD4I CCNGG 4 cut(s) 203, 855, 865, 988
StyI CCWWGG 3 cut(s) 677, 1540, 1674
TaaI ACNGT 4 cut(s) 305, 644, 722, 823
TaiI ACGT 2 cut(s) 122, 2145
TaqI TCGA 5 cut(s) 639, 1088, 1095, 1504, 1904
TatI WGTACW 4 cut(s) 962, 1656, 1699, 1980
TauI GCSGC 1 cut(s) 1059
TfiI GAWTC 5 cut(s) 740, 916, 1352, 1395, 2191
Tru1I TTAA 9 cut(s) 176, 368, 431, 1331, 1518, 1527, 1800, 1872, 1887
Tru9I TTAA 9 cut(s) 176, 368, 431, 1331, 1518, 1527, 1800, 1872, 1887
TscAI CASTG 2 cut(s) 205, 259
TseFI GTSAC 3 cut(s) 883, 947, 2011
TseI GCWGC 5 cut(s) 59, 800, 1385, 1511, 2275
Tsp45I GTSAC 3 cut(s) 883, 947, 2011
TspDTI ATGAA 5 cut(s) 219, 750, 908, 1545, 1779
TspRI CASTG 2 cut(s) 205, 259
Van91I CCANNNNNTGG 3 cut(s) 291, 320, 393
Vha464I CTTAAG 2 cut(s) 430, 1886
VpaK11BI GGWCC 3 cut(s) 396, 705, 932
XapI RAATTY 1 cut(s) 1262
XbaI TCTAGA 1 cut(s) 1255
XceI RCATGY 1 cut(s) 479
XcmI CCANNNNNNNNNTGG 2 cut(s) 292, 317
XmiI GTMKAC 1 cut(s) 1312
XmnI GAANNNNTTC 1 cut(s) 976
XspI CTAG 7 cut(s) 540, 960, 1220, 1256, 1733, 1920, 2115
ZraI GACGTC 1 cut(s) 2143
ZrmI AGTACT 1 cut(s) 964
Zsp2I ATGCAT 1 cut(s) 1599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.