MD12G1151300.v1.1

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0000166
Physical Location & Seq
Forward (+)
23125808 .. 23127172
1365 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1151300.v1.1.491

Sequence Viewer

Length: 1020 bp
ATGCACAAGCTCATCTCAAGGCAAGAAAAATACCTTATAGTCCAAACTGGCTTAAGACCAACCCCAGGTCTAAAGCCTTTTCGGAAACTTGCCATGGACGTCCACAAACTCCTCATTTTTTTGCTGTTTGCAACTGCATCTGGTTGGAGCCAAGGAGGGCTGCAAAGCCTAAGACAGGGGAGCTCTTTGAAAGTTGAGGAAGAGAGCCATTCGTTGGTCTCACCAAATGGAGCTTTCTCCAGTGGATTTTACAACGTCGGCAAAAGGGCATTTTGTTATGCAATTTGGTACACGAATTCAATCAATAAAACCGTTGTCTGGATGGCTAACCGAGATAGGCCTGTAAATGAAACAAGGTCTAGGCTAACCCTCCGAAGAAATGGCAACCTTGTCCTTACTGATGGGATTGGATCAACTGTGTGGTCAACAAACACTTTTTCTGGTGTTGGCATGGAGGTTCGGCTTCTTGAGACTGGAAACTTGGTGCCGATCAGTCAAGCAAATAGGTTGTACAGCCTAAATGATTCAACAGGGACTTGGAACATCACATGGTTACCTAATGCTATTGATACTTGTCAGGTTCATGGCTTGTGTGGTGAATACAGAATTTGTATCTACAATCCGCAACCTATTTGTACTTGCCCTCATGGTTTCTCCCTAAGGGATCATTCAAACTGGTCAAAAGGCTGCTCACTTTCAGTCATTTTGTCTCATGATTCAAACAAGTTGGACTTCATGGAGATTCCTAACTCAGATTACTTTGCATATGACTTGGATACGACAGCTATTGGAATCCCTTATGAAGAATGCAGGGACGCGTGCTTATATGATTTGAGATGCAAAGGATTTGGATATGCTCGGGATGGAAGCGGGGTACGTTACCCCAAAAGTTTTCTCCTTAATGGATTTCATAAGCCTAGTACGTTCATTTCTATGTATATTAAGATTCTGAAAGGTTTGAGCACCAATGAAGCCCTAAAGAAGCTAAAACCATATGAACTGAACTGCTCCTCTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

340

Amino Acids

38.1

Weight (kDa)

9.11

Isoelectric Point (pI)

40.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 104 - 186 2.6e-14 D-mannose binding lectin
S_locus_glycop PF00954 174 - 219 1.1e-06 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 102
AccB1I GGYRCC 1 cut(s) 484
AccB7I CCANNNNNTGG 1 cut(s) 214
AccII CGCG 1 cut(s) 818
AciI CCGC 2 cut(s) 623, 870
AclWI GGATC 2 cut(s) 418, 672
AcsI RAATTY 2 cut(s) 295, 606
AcyI GRCGYC 1 cut(s) 99
AfaI GTAC 5 cut(s) 290, 512, 637, 876, 922
AfiI CCNNNNNNNGG 4 cut(s) 65, 175, 214, 318
AflII CTTAAG 1 cut(s) 52
AflIII ACRYGT 1 cut(s) 816
AgsI TTSAA 5 cut(s) 190, 300, 528, 672, 720
AjnI CCWGG 1 cut(s) 64
AluBI AGCT 5 cut(s) 10, 183, 233, 785, 985
AluI AGCT 5 cut(s) 10, 183, 233, 785, 985
Alw21I GWGCWC 2 cut(s) 185, 965
Alw26I GTCTC 3 cut(s) 223, 464, 714
AlwI GGATC 2 cut(s) 418, 672
Ama87I CYCGRG 1 cut(s) 858
AoxI GGCC 1 cut(s) 338
ApeKI GCWGC 2 cut(s) 160, 687
ApoI RAATTY 2 cut(s) 295, 606
AsuHPI GGTGA 2 cut(s) 213, 608
AvaI CYCGRG 1 cut(s) 858
AxyI CCTNAGG 1 cut(s) 659
BanI GGYRCC 1 cut(s) 484
BanII GRGCYC 1 cut(s) 185
Bbv12I GWGCWC 2 cut(s) 185, 965
BbvI GCAGC 2 cut(s) 147, 674
BccI CCATC 3 cut(s) 316, 395, 857
BciT130I CCWGG 1 cut(s) 66
BciVI GTATCC 1 cut(s) 769
BcoDI GTCTC 3 cut(s) 223, 464, 714
BfaI CTAG 2 cut(s) 360, 918
BfrI CTTAAG 1 cut(s) 52
BfuI GTATCC 1 cut(s) 769
BisI GCNGC 2 cut(s) 161, 688
BlsI GCNGC 2 cut(s) 162, 689
Bme1390I CCNGG 1 cut(s) 66
BmeT110I CYCGRG 1 cut(s) 858
BmiI GGNNCC 2 cut(s) 149, 486
BmrFI CCNGG 1 cut(s) 66
BmsI GCATC 2 cut(s) 146, 827
BpmI CTGGAG 1 cut(s) 223
BpuEI CTTGAG 1 cut(s) 488
BsaHI GRCGYC 1 cut(s) 99
BsaI GGTCTC 1 cut(s) 223
BsaJI CCNNGG 3 cut(s) 64, 93, 151
Bsc4I CCNNNNNNNGG 4 cut(s) 65, 175, 214, 318
Bse1I ACTGG 4 cut(s) 52, 240, 478, 680
Bse21I CCTNAGG 1 cut(s) 659
BseBI CCWGG 1 cut(s) 66
BseDI CCNNGG 3 cut(s) 64, 93, 151
BseGI GGATG 2 cut(s) 327, 868
BseLI CCNNNNNNNGG 4 cut(s) 65, 175, 214, 318
BseMII CTCAG 1 cut(s) 765
BseNI ACTGG 4 cut(s) 52, 240, 478, 680
BseRI GAGGAG 2 cut(s) 101, 1000
BseXI GCAGC 2 cut(s) 147, 674
Bsh1236I CGCG 1 cut(s) 818
BshFI GGCC 1 cut(s) 340
BshNI GGYRCC 1 cut(s) 484
BsiHKAI GWGCWC 2 cut(s) 185, 965
BsiHKCI CYCGRG 1 cut(s) 858
BslFI GGGAC 2 cut(s) 547, 827
BslI CCNNNNNNNGG 4 cut(s) 65, 175, 214, 318
BsmAI GTCTC 3 cut(s) 223, 464, 714
BsmFI GGGAC 2 cut(s) 547, 827
BsmI GAATGC 1 cut(s) 812
BsnI GGCC 1 cut(s) 340
Bso31I GGTCTC 1 cut(s) 223
BsoBI CYCGRG 1 cut(s) 858
Bsp1286I GDGCHC 2 cut(s) 185, 965
Bsp1407I TGTACA 1 cut(s) 510
Bsp143I GATC 3 cut(s) 410, 489, 664
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 2 cut(s) 623, 870
BspANI GGCC 1 cut(s) 340
BspCNI CTCAG 1 cut(s) 764
BspFNI CGCG 1 cut(s) 818
BspHI TCATGA 1 cut(s) 712
BspLI GGNNCC 2 cut(s) 149, 486
BspPI GGATC 2 cut(s) 418, 672
BspT107I GGYRCC 1 cut(s) 484
BspTI CTTAAG 1 cut(s) 52
BspTNI GGTCTC 1 cut(s) 223
BsrGI TGTACA 1 cut(s) 510
BsrI ACTGG 4 cut(s) 52, 240, 478, 680
BssECI CCNNGG 3 cut(s) 64, 93, 151
BssMI GATC 3 cut(s) 410, 489, 664
BssNI GRCGYC 1 cut(s) 99
BssT1I CCWWGG 2 cut(s) 93, 151
Bst2UI CCWGG 1 cut(s) 66
Bst4CI ACNGT 2 cut(s) 313, 418
Bst6I CTCTTC 1 cut(s) 195
BstACI GRCGYC 1 cut(s) 99
BstAFI CTTAAG 1 cut(s) 52
BstAUI TGTACA 1 cut(s) 510
BstC8I GCNNGC 1 cut(s) 820
BstDEI CTNAG 3 cut(s) 170, 659, 751
BstDSI CCRYGG 1 cut(s) 93
BstEII GGTNACC 1 cut(s) 552
BstENI CCTNNNNNAGG 1 cut(s) 173
BstF5I GGATG 2 cut(s) 327, 868
BstFNI CGCG 1 cut(s) 818
BstKTI GATC 3 cut(s) 413, 492, 667
BstMAI GTCTC 3 cut(s) 223, 464, 714
BstMBI GATC 3 cut(s) 410, 489, 664
BstNI CCWGG 1 cut(s) 66
BstPI GGTNACC 1 cut(s) 552
BstSCI CCNGG 1 cut(s) 64
BstUI CGCG 1 cut(s) 818
BstV1I GCAGC 2 cut(s) 147, 674
Bsu36I CCTNAGG 1 cut(s) 659
BsuI GTATCC 1 cut(s) 769
BsuRI GGCC 1 cut(s) 340
BtgI CCRYGG 1 cut(s) 93
BtsCI GGATG 2 cut(s) 327, 868
BtsIMutI CAGTG 1 cut(s) 247
Cac8I GCNNGC 1 cut(s) 820
CciI TCATGA 1 cut(s) 712
CseI GACGC 1 cut(s) 824
Csp6I GTAC 5 cut(s) 289, 511, 636, 875, 921
CviAII CATG 7 cut(s) 94, 451, 549, 584, 647, 713, 736
CviQI GTAC 5 cut(s) 289, 511, 636, 875, 921
DdeI CTNAG 3 cut(s) 170, 659, 751
DpnI GATC 3 cut(s) 412, 491, 666
DpnII GATC 3 cut(s) 410, 489, 664
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Ecl136II GAGCTC 1 cut(s) 183
Eco130I CCWWGG 2 cut(s) 93, 151
Eco147I AGGCCT 1 cut(s) 340
Eco24I GRGCYC 1 cut(s) 185
Eco31I GGTCTC 1 cut(s) 223
Eco53kI GAGCTC 1 cut(s) 183
Eco81I CCTNAGG 1 cut(s) 659
Eco88I CYCGRG 1 cut(s) 858
Eco91I GGTNACC 1 cut(s) 552
EcoICRI GAGCTC 1 cut(s) 183
EcoNI CCTNNNNNAGG 1 cut(s) 173
EcoO65I GGTNACC 1 cut(s) 552
EcoRI GAATTC 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 64
EcoT14I CCWWGG 2 cut(s) 93, 151
EcoT38I GRGCYC 1 cut(s) 185
ErhI CCWWGG 2 cut(s) 93, 151
FaeI CATG 7 cut(s) 97, 454, 552, 587, 650, 716, 739
FalI AAGNNNNNCTT 2 cut(s) 716, 748
FaqI GGGAC 2 cut(s) 547, 827
FatI CATG 7 cut(s) 93, 450, 548, 583, 646, 712, 735
FauI CCCGC 1 cut(s) 863
FauNDI CATATG 2 cut(s) 766, 994
Fnu4HI GCNGC 2 cut(s) 161, 688
FokI GGATG 2 cut(s) 334, 875
FriOI GRGCYC 1 cut(s) 185
Fsp4HI GCNGC 2 cut(s) 161, 688
FspBI CTAG 2 cut(s) 360, 918
GluI GCNGC 2 cut(s) 161, 688
GsuI CTGGAG 1 cut(s) 223
HaeIII GGCC 1 cut(s) 340
HgaI GACGC 1 cut(s) 824
Hin1I GRCGYC 1 cut(s) 99
Hin1II CATG 7 cut(s) 97, 454, 552, 587, 650, 716, 739
HincII GTYRAC 1 cut(s) 426
HindII GTYRAC 1 cut(s) 426
HinfI GANTC 5 cut(s) 524, 716, 742, 792, 946
HphI GGTGA 2 cut(s) 213, 608
Hpy166II GTNNAC 3 cut(s) 103, 291, 426
Hpy188I TCNGA 4 cut(s) 84, 374, 754, 951
Hpy188III TCNNGA 5 cut(s) 319, 467, 713, 860, 1014
Hpy8I GTNNAC 3 cut(s) 103, 291, 426
Hpy99I CGWCG 1 cut(s) 260
HpyCH4III ACNGT 2 cut(s) 313, 418
HpyCH4IV ACGT 4 cut(s) 99, 255, 877, 923
HpyCH4V TGCA 8 cut(s) 4, 131, 137, 163, 281, 764, 810, 840
HpyF3I CTNAG 3 cut(s) 170, 659, 751
HpySE526I ACGT 4 cut(s) 99, 255, 877, 923
Hsp92I GRCGYC 1 cut(s) 99
Hsp92II CATG 7 cut(s) 97, 454, 552, 587, 650, 716, 739
Kzo9I GATC 3 cut(s) 410, 489, 664
LmnI GCTCC 4 cut(s) 147, 180, 230, 1013
Lsp1109I GCAGC 2 cut(s) 147, 674
LweI GCATC 2 cut(s) 146, 827
MaeI CTAG 2 cut(s) 360, 918
MaeII ACGT 4 cut(s) 99, 255, 877, 923
MaeIII GTNAC 2 cut(s) 552, 878
MalI GATC 3 cut(s) 412, 491, 666
MboI GATC 3 cut(s) 410, 489, 664
MboII GAAGA 3 cut(s) 212, 387, 815
MhlI GDGCHC 2 cut(s) 185, 965
MluCI AATT 3 cut(s) 282, 295, 606
MluI ACGCGT 1 cut(s) 816
MmeI TCCRAC 2 cut(s) 125, 708
MnlI CCTC 6 cut(s) 122, 149, 190, 380, 448, 654
MseI TTAA 3 cut(s) 53, 900, 942
MslI CAYNNNNRTG 1 cut(s) 932
MspCI CTTAAG 1 cut(s) 52
MspR9I CCNGG 1 cut(s) 66
Mva1269I GAATGC 1 cut(s) 812
MvaI CCWGG 1 cut(s) 66
MvnI CGCG 1 cut(s) 818
NcoI CCATGG 1 cut(s) 93
NdeI CATATG 2 cut(s) 766, 994
NdeII GATC 3 cut(s) 410, 489, 664
NlaIII CATG 7 cut(s) 97, 454, 552, 587, 650, 716, 739
NlaIV GGNNCC 2 cut(s) 149, 486
PagI TCATGA 1 cut(s) 712
PceI AGGCCT 1 cut(s) 340
PctI GAATGC 1 cut(s) 812
PfeI GAWTC 5 cut(s) 524, 716, 742, 792, 946
PflMI CCANNNNNTGG 1 cut(s) 214
PkrI GCNGC 2 cut(s) 162, 689
Psp124BI GAGCTC 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 64
PspEI GGTNACC 1 cut(s) 552
PspGI CCWGG 1 cut(s) 64
PspN4I GGNNCC 2 cut(s) 149, 486
RsaI GTAC 5 cut(s) 290, 512, 637, 876, 922
RsaNI GTAC 5 cut(s) 289, 511, 636, 875, 921
RseI CAYNNNNRTG 1 cut(s) 932
SacI GAGCTC 1 cut(s) 185
SaqAI TTAA 3 cut(s) 53, 900, 942
SatI GCNGC 2 cut(s) 161, 688
Sau3AI GATC 3 cut(s) 410, 489, 664
ScrFI CCNGG 1 cut(s) 66
SduI GDGCHC 2 cut(s) 185, 965
SfaNI GCATC 2 cut(s) 146, 827
SmiMI CAYNNNNRTG 1 cut(s) 932
SmlI CTYRAG 3 cut(s) 16, 52, 467
SmoI CTYRAG 3 cut(s) 16, 52, 467
Sse9I AATT 3 cut(s) 282, 295, 606
SseBI AGGCCT 1 cut(s) 340
SsiI CCGC 2 cut(s) 623, 870
SspMI CTAG 2 cut(s) 360, 918
SstI GAGCTC 1 cut(s) 185
StuI AGGCCT 1 cut(s) 340
StyD4I CCNGG 1 cut(s) 64
StyI CCWWGG 2 cut(s) 93, 151
TaaI ACNGT 2 cut(s) 313, 418
TaiI ACGT 4 cut(s) 102, 258, 880, 926
TaqI TCGA 1 cut(s) 1015
TasI AATT 3 cut(s) 282, 295, 606
TatI WGTACW 2 cut(s) 510, 635
TfiI GAWTC 5 cut(s) 524, 716, 742, 792, 946
Tru1I TTAA 3 cut(s) 53, 900, 942
Tru9I TTAA 3 cut(s) 53, 900, 942
TscAI CASTG 1 cut(s) 247
TseI GCWGC 2 cut(s) 160, 687
TspDTI ATGAA 8 cut(s) 363, 572, 724, 816, 899, 916, 984, 1011
TspRI CASTG 1 cut(s) 247
Van91I CCANNNNNTGG 1 cut(s) 214
Vha464I CTTAAG 1 cut(s) 52
XagI CCTNNNNNAGG 1 cut(s) 173
XapI RAATTY 2 cut(s) 295, 606
XspI CTAG 2 cut(s) 360, 918
ZraI GACGTC 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.