Rw3G011310

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000166
Physical Location & Seq
Reverse (-)
10973898 .. 10977104
3207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G011310.1

Sequence Viewer

Length: 2334 bp
ATGAAGTACAGAGCTTTTTCAGTCTCCTTTCTATGTCTTCTCTGTTTTGCAACTGCAAAAACCCAAAGTAGTCTAAAGAGAGGATCTTCTCTTTCAGTGGAGGATGATTCAGATTTCCTAACCTCACCAGACAAGTCTTTCACGTGTGGGTTTCATGGGGTTGGCACAAATGCCTACTGGTTCTCAATTTGGTTCACAAGCTCAAAAGACAGGACCATTGTTTGGATGGCCAACAGGGACAAGCCAGTCAATGGCTTGGGGTCTAGAGTCTATCTGAGCCGAGATGGCTCGATGGTCTTGACTGATGTAGATGGAGCCATCATCTGGAAGAGCAGCACCAACTCGAGTACCAATACTGTTGCTGAAAGAGCTGAGCTTTTGGATTCTGGCAACCTTGTTCTGAAGGACCCTAGTGGTAAAATTCTATGGCAAAGCTTTGATTTTCCTACTGGTACTTTGCTCCCAAACCAGCACTTTAGAAAGAGCAATAAGTTGATTTCTAATTTGGGAAGAGGGGATTTTGGTACTGGCTATTTTAGTTTCTATTTTGATAATGATAATGTTTTGAAGTTGATGTATGATGGTCCTGATATTTCTAGCTTGTACTGGCCTGACCTTGATTATAGTGTGTTTCAGAATGGTAGAAATGCTTATAATAGTAGTAGAGTTGCTGTTTTAGATGAACTTGGTAGTTTTTCGTCTAGTGATGAACTGCAATTTAGTGCTTTTGACATGGGTTTGAGAGTGAAAAGGAGGTTGACAATGGATTATGATGGAAATCTAAGACTTTATAGTCTTAATAGCTCAACAGGATTGTGGATAATCACATGGCAAGCTATGGTGGAGCTTTGTAAGGTTCATGGGATATGTGGGCAAAATGGGATTTGTATATATACACCAGGGCCAAAGTGTTCATGTCCTCCTGGCTATGAAGTAGCTGATGCAAGTAACTTGAACTTGGGCTGCAAGCCTAAGTTCAAGCGTACATGCTCGAAGTCCCAAGAAGAGAAATTTGTGCGGATTCCGCAAGTAGATTTCTATGGATTTGATCTCAATTATAGTGTAGCAATTTCAATTGATGATTGCAGACAGCTCTGCTTGGGGGATTGCCGGTGTGAGGCATTTAGCTATAGGCTAAATGGGGAAGGGAGGTGTTACACCAAAAGTGCTCTTTTCAATGGCTACAAGTCTCCAGATTTTGTGGGCAGTATATACTTGAGAATGCCTGTGAGTGTGGAAGCACCATTACTAGTCACCAGGCTCAATGCCCTGGATTCATGTAAGAGTACTGAGGCCCAAAAAATGGGTTCTGCTTCAATGTATGACAATACTAGTAAAAGGGTAAGATGGGCATATCTGTATTGGTTTGCTACTGCAGCTGGTGCAGTTGAAATTCTCTTCATACTTTCAGGTTTGTGGTTACTTTTCAGAAGACATGGCGCTAGAGCTCCTATCGAAGATGGATATCATGTGATTTCGAGTCAATTTAGAATGTTTCGAGGGGCTTCTGGGGCTGTGTTTAAGGGTGTTCTGGAAGATGAGAGAGTGGTTGCTGTGAAGAAATTGGCAGACATTTATCAAGGTGAAGATGTGTTTTGGGCGGAAGTAAGCATAATTGGTAAAATCAATCACATGAACCTAGTGAGAATATGGGGATTCTGTTCAGAAGATAAACACAGACTCCTGGTGTCTGAGTTTATTGAAAATGGATCACTAGACAAGCACTTGTTCCCCCCAAATTTTCTTGGATGGCAAGAAAGGTTTAAAGTTGCAATAGGGGTTGCAAAGGGTTTAGCCTATCTTCACCATGAGTGTCTAGAATGGGTTATACATTGTGATGTGAAGCCTGAAAATATACTCTTAGACAGTAACTTTGAGGCAAAGATTGCAGATTTCGGGCTAGCAAAGTTGACTCAGAGAGGCAGCCAGAGCTCTATGTTCTCTAAAGTTCGAGGAACAAAAGGGTATATGGCCCCGGAGTGGGCTCTAAACCTTCCAATCACTGCGAAAGTGGATGTTTACAGTTACGGAGTGGTGATTCTAGAGTTGGGCATTCGACTTTCGAATTGGGCATTGGAGGATAGCGAGGAGCAAGAGGCAGAGCTGACTAGGTGTGTGAGGATAGTGAAAAGGAAGATTCAATGTGGAGAAGATTCATGGATGGAGGATATGTTGGATCCAAGACTAAAAGGGCAGTTCAGCAGGAAACAAGCAGAAAAGATGGTTGAGATTGGTATTTCTTGTGTGGAAGAAGATAGGAGCAGAAGACCGACAATGGATTCAGTATTACAAGATTTGTTAGAATGTGAAGATGAGTCCTATGTGCATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

777

Amino Acids

87.68

Weight (kDa)

6.25

Isoelectric Point (pI)

35.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 72 - 163 3.8e-24 D-mannose binding lectin
S_locus_glycop PF00954 234 - 311 5.5e-10 S-locus glycoprotein domain
PAN_2 PF08276 330 - 388 2.3e-06 PAN-like domain
PAN_1 PF00024 337 - 389 3.6e-06 PAN domain
Pkinase PF00069 500 - 765 2.5e-48 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 500 - 766 2.2e-37 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 654
AasI GACNNNNNNGTC 2 cut(s) 245, 792
AccB7I CCANNNNNTGG 4 cut(s) 222, 251, 324, 1303
AciI CCGC 3 cut(s) 1018, 1025, 1601
AclWI GGATC 4 cut(s) 91, 1717, 2171, 2184
AcoI YGGCCR 1 cut(s) 228
AcsI RAATTY 4 cut(s) 420, 1010, 1392, 1738
AcuI CTGAAG 1 cut(s) 422
AcvI CACGTG 1 cut(s) 144
AfaI GTAC 7 cut(s) 8, 349, 454, 526, 605, 985, 1288
AfiI CCNNNNNNNGG 7 cut(s) 222, 251, 324, 1117, 1303, 1980, 1981
AflIII ACRYGT 1 cut(s) 143
AgsI TTSAA 9 cut(s) 568, 955, 979, 1074, 1177, 1317, 1391, 1703, 2141
AhlI ACTAGT 2 cut(s) 1249, 1331
AjnI CCWGG 5 cut(s) 898, 922, 1256, 1269, 1683
AjuI GAANNNNNNNTTGG 2 cut(s) 2057, 2089
Alw21I GWGCWC 3 cut(s) 1171, 1450, 1934
Alw26I GTCTC 2 cut(s) 28, 1194
AlwI GGATC 4 cut(s) 91, 1717, 2171, 2184
Ama87I CYCGRG 1 cut(s) 343
AoxI GGCC 5 cut(s) 228, 608, 902, 1293, 1971
ApeKI GCWGC 4 cut(s) 333, 963, 1376, 1923
ApoI RAATTY 4 cut(s) 420, 1010, 1392, 1738
ArsI GACNNNNNNTTYG 2 cut(s) 1856, 1888
AspLEI GCGC 1 cut(s) 1442
AspS9I GGNCC 6 cut(s) 213, 406, 584, 902, 1294, 1972
AsuC2I CCSGG 1 cut(s) 1976
AsuHPI GGTGA 5 cut(s) 117, 1246, 1595, 1796, 2047
AsuII TTCGAA 1 cut(s) 2063
AsuNHI GCTAGC 1 cut(s) 1900
AvaI CYCGRG 1 cut(s) 343
AvaII GGWCC 3 cut(s) 213, 406, 584
BaeI ACNNNNGTAYC 2 cut(s) 331, 364
BalI TGGCCA 1 cut(s) 230
BamHI GGATCC 1 cut(s) 2176
BanII GRGCYC 3 cut(s) 1450, 1934, 1987
BarI GAAGNNNNNNTAC 2 cut(s) 1230, 1262
BbrPI CACGTG 1 cut(s) 144
BbsI GAAGAC 3 cut(s) 29, 1438, 2272
Bbv12I GWGCWC 3 cut(s) 1171, 1450, 1934
BbvI GCAGC 4 cut(s) 345, 950, 1388, 1935
BciT130I CCWGG 5 cut(s) 900, 924, 1258, 1271, 1685
BcnI CCSGG 1 cut(s) 1976
BcoDI GTCTC 2 cut(s) 28, 1194
BcuI ACTAGT 2 cut(s) 1249, 1331
BfmI CTRYAG 2 cut(s) 1129, 1374
BfoI RGCGCY 1 cut(s) 1443
BglI GCCNNNNNGGC 1 cut(s) 285
BisI GCNGC 4 cut(s) 334, 964, 1377, 1924
BlpI GCTNAGC 1 cut(s) 372
BlsI GCNGC 4 cut(s) 335, 965, 1378, 1925
BmcAI AGTACT 1 cut(s) 1288
Bme1390I CCNGG 6 cut(s) 900, 924, 1258, 1271, 1685, 1976
Bme18I GGWCC 3 cut(s) 213, 406, 584
BmeT110I CYCGRG 1 cut(s) 343
BmgT120I GGNCC 6 cut(s) 213, 406, 584, 902, 1294, 1972
BmiI GGNNCC 4 cut(s) 316, 408, 1974, 2178
BmrFI CCNGG 6 cut(s) 900, 924, 1258, 1271, 1685, 1976
BmsI GCATC 1 cut(s) 931
BmtI GCTAGC 1 cut(s) 1904
BpiI GAAGAC 3 cut(s) 29, 1438, 2272
BpmI CTGGAG 1 cut(s) 1176
Bpu1102I GCTNAGC 1 cut(s) 372
Bpu14I TTCGAA 1 cut(s) 2063
BpuEI CTTGAG 1 cut(s) 1237
BpuMI CCSGG 1 cut(s) 1976
BsaAI YACGTR 1 cut(s) 144
BsaBI GATNNNNATC 2 cut(s) 777, 1464
BsaJI CCNNGG 3 cut(s) 899, 1269, 1974
BsaXI ACNNNNNCTCC 4 cut(s) 1665, 1695, 2156, 2186
Bsc4I CCNNNNNNNGG 7 cut(s) 222, 251, 324, 1117, 1303, 1980, 1981
Bse118I RCCGGY 1 cut(s) 1110
Bse1I ACTGG 5 cut(s) 182, 245, 454, 532, 611
Bse8I GATNNNNATC 2 cut(s) 777, 1464
BseBI CCWGG 5 cut(s) 900, 924, 1258, 1271, 1685
BseDI CCNNGG 3 cut(s) 899, 1269, 1974
BseGI GGATG 5 cut(s) 109, 231, 1754, 2020, 2166
BseJI GATNNNNATC 2 cut(s) 777, 1464
BseLI CCNNNNNNNGG 7 cut(s) 222, 251, 324, 1117, 1303, 1980, 1981
BseMII CTCAG 5 cut(s) 266, 363, 1281, 1683, 1928
BseNI ACTGG 5 cut(s) 182, 245, 454, 532, 611
BseRI GAGGAG 1 cut(s) 2102
BseXI GCAGC 4 cut(s) 345, 950, 1388, 1935
BsgI GTGCAG 1 cut(s) 1404
BshFI GGCC 5 cut(s) 230, 610, 904, 1295, 1973
BsiHKAI GWGCWC 3 cut(s) 1171, 1450, 1934
BsiHKCI CYCGRG 1 cut(s) 343
BsiSI CCGG 2 cut(s) 1111, 1976
BslFI GGGAC 2 cut(s) 251, 982
BslI CCNNNNNNNGG 7 cut(s) 222, 251, 324, 1117, 1303, 1980, 1981
BsmAI GTCTC 2 cut(s) 28, 1194
BsmFI GGGAC 2 cut(s) 251, 982
BsmI GAATGC 2 cut(s) 1227, 2052
BsnI GGCC 5 cut(s) 230, 610, 904, 1295, 1973
BsoBI CYCGRG 1 cut(s) 343
Bsp119I TTCGAA 1 cut(s) 2063
Bsp1286I GDGCHC 4 cut(s) 1171, 1450, 1934, 1987
Bsp143I GATC 4 cut(s) 83, 1048, 1709, 2176
Bsp1720I GCTNAGC 1 cut(s) 372
BspACI CCGC 3 cut(s) 1018, 1025, 1601
BspANI GGCC 5 cut(s) 230, 610, 904, 1295, 1973
BspCNI CTCAG 5 cut(s) 267, 364, 1282, 1684, 1927
BspLI GGNNCC 4 cut(s) 316, 408, 1974, 2178
BspMAI CTGCAG 1 cut(s) 1378
BspOI GCTAGC 1 cut(s) 1904
BspPI GGATC 4 cut(s) 91, 1717, 2171, 2184
BspQI GCTCTTC 1 cut(s) 323
BspT104I TTCGAA 1 cut(s) 2063
BsrFI RCCGGY 1 cut(s) 1110
BsrI ACTGG 5 cut(s) 182, 245, 454, 532, 611
BssAI RCCGGY 1 cut(s) 1110
BssECI CCNNGG 3 cut(s) 899, 1269, 1974
BssMI GATC 4 cut(s) 83, 1048, 1709, 2176
Bst2UI CCWGG 5 cut(s) 900, 924, 1258, 1271, 1685
Bst4CI ACNGT 3 cut(s) 358, 1868, 2024
Bst6I CTCTTC 4 cut(s) 323, 505, 999, 1403
BstAPI GCANNNNNTGC 2 cut(s) 1382, 1886
BstBAI YACGTR 1 cut(s) 144
BstBI TTCGAA 1 cut(s) 2063
BstC8I GCNNGC 3 cut(s) 834, 968, 1902
BstDEI CTNAG 8 cut(s) 275, 372, 782, 972, 1290, 1692, 1861, 1914
BstF5I GGATG 5 cut(s) 109, 231, 1754, 2020, 2166
BstH2I RGCGCY 1 cut(s) 1443
BstHHI GCGC 1 cut(s) 1442
BstKTI GATC 4 cut(s) 86, 1051, 1712, 2179
BstMAI GTCTC 2 cut(s) 28, 1194
BstMBI GATC 4 cut(s) 83, 1048, 1709, 2176
BstMWI GCNNNNNNNGC 8 cut(s) 285, 368, 1024, 1376, 1382, 1511, 1886, 1929
BstNI CCWGG 5 cut(s) 900, 924, 1258, 1271, 1685
BstNSI RCATGY 1 cut(s) 990
BstSCI CCNGG 6 cut(s) 898, 922, 1256, 1269, 1683, 1974
BstSFI CTRYAG 2 cut(s) 1129, 1374
BstV1I GCAGC 4 cut(s) 345, 950, 1388, 1935
BstV2I GAAGAC 3 cut(s) 29, 1438, 2272
BstX2I RGATCY 2 cut(s) 83, 2176
BstYI RGATCY 2 cut(s) 83, 2176
BsuRI GGCC 5 cut(s) 230, 610, 904, 1295, 1973
BtsCI GGATG 5 cut(s) 109, 231, 1754, 2020, 2166
BtsI GCAGTG 1 cut(s) 2001
BtsIMutI CAGTG 2 cut(s) 102, 2001
Cac8I GCNNGC 3 cut(s) 834, 968, 1902
CfoI GCGC 1 cut(s) 1442
Cfr10I RCCGGY 1 cut(s) 1110
Cfr13I GGNCC 6 cut(s) 213, 406, 584, 902, 1294, 1972
Csp6I GTAC 7 cut(s) 7, 348, 453, 525, 604, 984, 1287
CviQI GTAC 7 cut(s) 7, 348, 453, 525, 604, 984, 1287
DdeI CTNAG 8 cut(s) 275, 372, 782, 972, 1290, 1692, 1861, 1914
DpnI GATC 4 cut(s) 85, 1050, 1711, 2178
DpnII GATC 4 cut(s) 83, 1048, 1709, 2176
DraI TTTAAA 1 cut(s) 1765
DrdI GACNNNNNNGTC 2 cut(s) 245, 792
DseDI GACNNNNNNGTC 2 cut(s) 245, 792
EaeI YGGCCR 1 cut(s) 228
Eam1104I CTCTTC 4 cut(s) 323, 505, 999, 1403
EarI CTCTTC 4 cut(s) 323, 505, 999, 1403
EciI GGCGGA 1 cut(s) 1616
Ecl136II GAGCTC 2 cut(s) 1448, 1932
Eco24I GRGCYC 3 cut(s) 1450, 1934, 1987
Eco32I GATATC 1 cut(s) 1466
Eco47I GGWCC 3 cut(s) 213, 406, 584
Eco53kI GAGCTC 2 cut(s) 1448, 1932
Eco57I CTGAAG 1 cut(s) 422
Eco72I CACGTG 1 cut(s) 144
Eco88I CYCGRG 1 cut(s) 343
EcoICRI GAGCTC 2 cut(s) 1448, 1932
EcoO109I RGGNCCY 1 cut(s) 406
EcoRII CCWGG 5 cut(s) 898, 922, 1256, 1269, 1683
EcoRV GATATC 1 cut(s) 1466
EcoT38I GRGCYC 3 cut(s) 1450, 1934, 1987
FaqI GGGAC 2 cut(s) 251, 982
Fnu4HI GCNGC 4 cut(s) 334, 964, 1377, 1924
FokI GGATG 5 cut(s) 116, 238, 1761, 2027, 2173
FriOI GRGCYC 3 cut(s) 1450, 1934, 1987
Fsp4HI GCNGC 4 cut(s) 334, 964, 1377, 1924
GlaI GCGC 1 cut(s) 1441
GluI GCNGC 4 cut(s) 334, 964, 1377, 1924
GsuI CTGGAG 1 cut(s) 1176
HaeII RGCGCY 1 cut(s) 1443
HaeIII GGCC 5 cut(s) 230, 610, 904, 1295, 1973
HapII CCGG 2 cut(s) 1111, 1976
HhaI GCGC 1 cut(s) 1442
Hin6I GCGC 1 cut(s) 1440
HinP1I GCGC 1 cut(s) 1440
HincII GTYRAC 2 cut(s) 759, 1911
HindII GTYRAC 2 cut(s) 759, 1911
HindIII AAGCTT 1 cut(s) 433
HpaII CCGG 2 cut(s) 1111, 1976
HphI GGTGA 5 cut(s) 117, 1246, 1595, 1796, 2047
Hpy166II GTNNAC 4 cut(s) 195, 759, 1911, 2020
Hpy188I TCNGA 8 cut(s) 112, 276, 402, 636, 1430, 1666, 1693, 1917
Hpy188III TCNNGA 8 cut(s) 264, 298, 325, 587, 1193, 1532, 1817, 2042
Hpy8I GTNNAC 4 cut(s) 195, 759, 1911, 2020
HpyAV CCTTC 3 cut(s) 397, 1139, 2003
HpyCH4III ACNGT 3 cut(s) 358, 1868, 2024
HpyCH4IV ACGT 1 cut(s) 143
HpyF10VI GCNNNNNNNGC 8 cut(s) 285, 368, 1024, 1376, 1382, 1511, 1886, 1929
HpyF3I CTNAG 8 cut(s) 275, 372, 782, 972, 1290, 1692, 1861, 1914
HpySE526I ACGT 1 cut(s) 143
HspAI GCGC 1 cut(s) 1440
Kzo9I GATC 4 cut(s) 83, 1048, 1709, 2176
LguI GCTCTTC 1 cut(s) 323
LmnI GCTCC 6 cut(s) 314, 465, 844, 1453, 2089, 2259
Lsp1109I GCAGC 4 cut(s) 345, 950, 1388, 1935
LweI GCATC 1 cut(s) 931
MaeII ACGT 1 cut(s) 143
MaeIII GTNAC 6 cut(s) 947, 1154, 1252, 1419, 1868, 2024
MalI GATC 4 cut(s) 85, 1050, 1711, 2178
MboI GATC 4 cut(s) 83, 1048, 1709, 2176
MfeI CAATTG 1 cut(s) 1074
MflI RGATCY 2 cut(s) 83, 2176
MhlI GDGCHC 4 cut(s) 1171, 1450, 1934, 1987
MlsI TGGCCA 1 cut(s) 230
MluNI TGGCCA 1 cut(s) 230
MlyI GAGTC 5 cut(s) 276, 1489, 1674, 1906, 2324
MmeI TCCRAC 1 cut(s) 2154
Mox20I TGGCCA 1 cut(s) 230
MscI TGGCCA 1 cut(s) 230
MseI TTAA 3 cut(s) 798, 1521, 1764
MslI CAYNNNNRTG 1 cut(s) 1836
Msp20I TGGCCA 1 cut(s) 230
MspA1I CMGCKG 1 cut(s) 1379
MspI CCGG 2 cut(s) 1111, 1976
MspR9I CCNGG 6 cut(s) 900, 924, 1258, 1271, 1685, 1976
MunI CAATTG 1 cut(s) 1074
Mva1269I GAATGC 2 cut(s) 1227, 2052
MvaI CCWGG 5 cut(s) 900, 924, 1258, 1271, 1685
MwoI GCNNNNNNNGC 8 cut(s) 285, 368, 1024, 1376, 1382, 1511, 1886, 1929
NciI CCSGG 1 cut(s) 1976
NdeII GATC 4 cut(s) 83, 1048, 1709, 2176
NheI GCTAGC 1 cut(s) 1900
NlaIV GGNNCC 4 cut(s) 316, 408, 1974, 2178
NmeAIII GCCGAG 1 cut(s) 305
NmuCI GTSAC 1 cut(s) 1252
NspI RCATGY 1 cut(s) 990
NspV TTCGAA 1 cut(s) 2063
PaeR7I CTCGAG 1 cut(s) 343
PciSI GCTCTTC 1 cut(s) 323
PctI GAATGC 2 cut(s) 1227, 2052
PfeI GAWTC 9 cut(s) 107, 383, 1021, 1274, 1656, 2038, 2137, 2153, 2279
PflMI CCANNNNNTGG 4 cut(s) 222, 251, 324, 1303
PkrI GCNGC 4 cut(s) 335, 965, 1378, 1925
PleI GAGTC 5 cut(s) 275, 1488, 1674, 1906, 2323
PmaCI CACGTG 1 cut(s) 144
PmlI CACGTG 1 cut(s) 144
PpsI GAGTC 5 cut(s) 275, 1488, 1674, 1906, 2323
Ppu21I YACGTR 1 cut(s) 144
PpuMI RGGWCCY 1 cut(s) 406
PsiI TTATAA 1 cut(s) 654
Psp124BI GAGCTC 2 cut(s) 1450, 1934
Psp5II RGGWCCY 1 cut(s) 406
Psp6I CCWGG 5 cut(s) 898, 922, 1256, 1269, 1683
PspCI CACGTG 1 cut(s) 144
PspGI CCWGG 5 cut(s) 898, 922, 1256, 1269, 1683
PspN4I GGNNCC 4 cut(s) 316, 408, 1974, 2178
PspPI GGNCC 6 cut(s) 213, 406, 584, 902, 1294, 1972
PspPPI RGGWCCY 1 cut(s) 406
PspXI VCTCGAGB 1 cut(s) 343
PstI CTGCAG 1 cut(s) 1378
PsuI RGATCY 2 cut(s) 83, 2176
PvuII CAGCTG 1 cut(s) 1379
RsaI GTAC 7 cut(s) 8, 349, 454, 526, 605, 985, 1288
RsaNI GTAC 7 cut(s) 7, 348, 453, 525, 604, 984, 1287
RseI CAYNNNNRTG 1 cut(s) 1836
SacI GAGCTC 2 cut(s) 1450, 1934
SapI GCTCTTC 1 cut(s) 323
SaqAI TTAA 3 cut(s) 798, 1521, 1764
SatI GCNGC 4 cut(s) 334, 964, 1377, 1924
Sau3AI GATC 4 cut(s) 83, 1048, 1709, 2176
Sau96I GGNCC 6 cut(s) 213, 406, 584, 902, 1294, 1972
ScaI AGTACT 1 cut(s) 1288
SchI GAGTC 5 cut(s) 276, 1489, 1674, 1906, 2324
ScrFI CCNGG 6 cut(s) 900, 924, 1258, 1271, 1685, 1976
SduI GDGCHC 4 cut(s) 1171, 1450, 1934, 1987
SfaNI GCATC 1 cut(s) 931
SfcI CTRYAG 2 cut(s) 1129, 1374
Sfr274I CTCGAG 1 cut(s) 343
SfuI TTCGAA 1 cut(s) 2063
SinI GGWCC 3 cut(s) 213, 406, 584
SlaI CTCGAG 1 cut(s) 343
SmiMI CAYNNNNRTG 1 cut(s) 1836
SmlI CTYRAG 2 cut(s) 343, 1216
SmoI CTYRAG 2 cut(s) 343, 1216
SpeI ACTAGT 2 cut(s) 1249, 1331
SsiI CCGC 3 cut(s) 1018, 1025, 1601
SstI GAGCTC 2 cut(s) 1450, 1934
StyD4I CCNGG 6 cut(s) 898, 922, 1256, 1269, 1683, 1974
TaaI ACNGT 3 cut(s) 358, 1868, 2024
TaiI ACGT 1 cut(s) 146
TaqI TCGA 9 cut(s) 290, 344, 992, 1455, 1478, 1498, 1951, 2056, 2063
TaqII GACCGA 1 cut(s) 2284
TatI WGTACW 3 cut(s) 6, 603, 1286
TfiI GAWTC 9 cut(s) 107, 383, 1021, 1274, 1656, 2038, 2137, 2153, 2279
Tru1I TTAA 3 cut(s) 798, 1521, 1764
Tru9I TTAA 3 cut(s) 798, 1521, 1764
TscAI CASTG 2 cut(s) 102, 2008
TseFI GTSAC 1 cut(s) 1252
TseI GCWGC 4 cut(s) 333, 963, 1376, 1923
Tsp45I GTSAC 1 cut(s) 1252
TspGWI ACGGA 1 cut(s) 2043
TspRI CASTG 2 cut(s) 102, 2008
Van91I CCANNNNNTGG 4 cut(s) 222, 251, 324, 1303
VpaK11BI GGWCC 3 cut(s) 213, 406, 584
XapI RAATTY 4 cut(s) 420, 1010, 1392, 1738
XbaI TCTAGA 3 cut(s) 263, 1816, 2041
XceI RCATGY 1 cut(s) 990
XcmI CCANNNNNNNNNTGG 1 cut(s) 223
XhoI CTCGAG 1 cut(s) 343
ZrmI AGTACT 1 cut(s) 1288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.