pycom04g12550

Receptor protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
15485580 .. 15486286
707 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g12550.3

Sequence Viewer

Length: 429 bp
ATGGTCTTGACGGACATCAATGGAACAGCCGTCTGGGGGACCACCGCGAACTCCAGCAGCTCTGGCGCTGACATGTCGGAAAAAGGCACTTTTTGGACCGGCTATTTCAGCTTCTCTTTCGACAATGACAATGTGTTGAAGCTCATGTTCGACGGCCCTGACACTTCGAGCTTGTACTGGCCTGATCCTGATTACTCCGTTTTCTGCAACGGTCTAACAAACTACGACAGCAGCACTCAACAGGGGTTGTGGGCGGTCACCTGGGAAGCCATGACGGAGCTGTGTAAGGTGCATGGGATCTGTGGGACAAATGGGATTTGTATTAATACGCCACAGCCGAAATGCTCATGCCCTTCTGGCTACAAAGTAGCTGACACAAGTGACTGGAAAAAGGGTTGCAAGCCTATGTTTAATCGTTTGCGGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

143

Amino Acids

15.61

Weight (kDa)

4.72

Isoelectric Point (pI)

15.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 47
AciI CCGC 3 cut(s) 45, 254, 421
AclWI GGATC 2 cut(s) 179, 305
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 1 cut(s) 36
AflIII ACRYGT 1 cut(s) 72
AgsI TTSAA 1 cut(s) 139
AjnI CCWGG 1 cut(s) 260
AluBI AGCT 6 cut(s) 60, 111, 142, 171, 280, 371
AluI AGCT 6 cut(s) 60, 111, 142, 171, 280, 371
AlwI GGATC 2 cut(s) 179, 305
AoxI GGCC 2 cut(s) 154, 179
ApeKI GCWGC 2 cut(s) 57, 231
AseI ATTAAT 1 cut(s) 324
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 4 cut(s) 39, 96, 155, 423
AsuHPI GGTGA 1 cut(s) 250
AvaII GGWCC 3 cut(s) 39, 96, 423
BbvI GCAGC 2 cut(s) 69, 243
BceAI ACGGC 2 cut(s) 14, 169
BciT130I CCWGG 1 cut(s) 262
BfaI CTAG 1 cut(s) 427
BfoI RGCGCY 1 cut(s) 69
BglI GCCNNNNNGGC 1 cut(s) 357
BisI GCNGC 2 cut(s) 58, 232
BlsI GCNGC 2 cut(s) 59, 233
Bme1390I CCNGG 1 cut(s) 262
Bme18I GGWCC 3 cut(s) 39, 96, 423
BmgT120I GGNCC 4 cut(s) 39, 96, 155, 423
BmiI GGNNCC 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 262
BpmI CTGGAG 1 cut(s) 37
BsaJI CCNNGG 1 cut(s) 261
Bsc4I CCNNNNNNNGG 1 cut(s) 36
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 2 cut(s) 182, 389
BseBI CCWGG 1 cut(s) 262
BseDI CCNNGG 1 cut(s) 261
BseLI CCNNNNNNNGG 1 cut(s) 36
BseNI ACTGG 2 cut(s) 182, 389
BseXI GCAGC 2 cut(s) 69, 243
Bsh1236I CGCG 1 cut(s) 47
BshFI GGCC 2 cut(s) 156, 181
BsiSI CCGG 1 cut(s) 99
BslFI GGGAC 2 cut(s) 52, 319
BslI CCNNNNNNNGG 1 cut(s) 36
BsmFI GGGAC 2 cut(s) 52, 319
BsnI GGCC 2 cut(s) 156, 181
Bsp143I GATC 2 cut(s) 184, 297
BspACI CCGC 3 cut(s) 45, 254, 421
BspANI GGCC 2 cut(s) 156, 181
BspFNI CGCG 1 cut(s) 47
BspLI GGNNCC 1 cut(s) 40
BspPI GGATC 2 cut(s) 179, 305
BsrFI RCCGGY 1 cut(s) 98
BsrI ACTGG 2 cut(s) 182, 389
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 2 cut(s) 184, 297
Bst2UI CCWGG 1 cut(s) 262
Bst4CI ACNGT 1 cut(s) 212
BstC8I GCNNGC 1 cut(s) 401
BstEII GGTNACC 1 cut(s) 256
BstFNI CGCG 1 cut(s) 47
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 2 cut(s) 187, 300
BstMBI GATC 2 cut(s) 184, 297
BstMWI GCNNNNNNNGC 3 cut(s) 63, 108, 357
BstNI CCWGG 1 cut(s) 262
BstNSI RCATGY 1 cut(s) 76
BstPI GGTNACC 1 cut(s) 256
BstSCI CCNGG 1 cut(s) 260
BstUI CGCG 1 cut(s) 47
BstV1I GCAGC 2 cut(s) 69, 243
BstX2I RGATCY 1 cut(s) 297
BstYI RGATCY 1 cut(s) 297
BsuRI GGCC 2 cut(s) 156, 181
Cac8I GCNNGC 1 cut(s) 401
CfoI GCGC 1 cut(s) 68
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 4 cut(s) 39, 96, 155, 423
Csp6I GTAC 1 cut(s) 175
CviAII CATG 5 cut(s) 73, 145, 271, 293, 348
CviQI GTAC 1 cut(s) 175
DpnI GATC 2 cut(s) 186, 299
DpnII GATC 2 cut(s) 184, 297
Eco47I GGWCC 3 cut(s) 39, 96, 423
Eco91I GGTNACC 1 cut(s) 256
EcoO65I GGTNACC 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 260
FaeI CATG 5 cut(s) 76, 148, 274, 296, 351
FaiI YATR 6 cut(s) 74, 146, 272, 294, 349, 407
FaqI GGGAC 2 cut(s) 52, 319
FatI CATG 5 cut(s) 72, 144, 270, 292, 347
Fnu4HI GCNGC 2 cut(s) 58, 232
Fsp4HI GCNGC 2 cut(s) 58, 232
FspBI CTAG 1 cut(s) 427
GlaI GCGC 1 cut(s) 67
GluI GCNGC 2 cut(s) 58, 232
GsuI CTGGAG 1 cut(s) 37
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 2 cut(s) 156, 181
HapII CCGG 1 cut(s) 99
HhaI GCGC 1 cut(s) 68
Hin1II CATG 5 cut(s) 76, 148, 274, 296, 351
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HpaII CCGG 1 cut(s) 99
HphI GGTGA 1 cut(s) 250
Hpy188I TCNGA 1 cut(s) 79
Hpy188III TCNNGA 2 cut(s) 7, 188
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 1 cut(s) 363
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4V TGCA 3 cut(s) 207, 292, 399
HpyF10VI GCNNNNNNNGC 3 cut(s) 63, 108, 357
Hsp92II CATG 5 cut(s) 76, 148, 274, 296, 351
HspAI GCGC 1 cut(s) 66
Kzo9I GATC 2 cut(s) 184, 297
LmnI GCTCC 1 cut(s) 277
Lsp1109I GCAGC 2 cut(s) 69, 243
MaeI CTAG 1 cut(s) 427
MaeIII GTNAC 2 cut(s) 256, 380
MalI GATC 2 cut(s) 186, 299
MboI GATC 2 cut(s) 184, 297
MflI RGATCY 1 cut(s) 297
MmeI TCCRAC 1 cut(s) 57
MseI TTAA 2 cut(s) 324, 411
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 1 cut(s) 262
MvaI CCWGG 1 cut(s) 262
MvnI CGCG 1 cut(s) 47
MwoI GCNNNNNNNGC 3 cut(s) 63, 108, 357
NdeII GATC 2 cut(s) 184, 297
NlaIII CATG 5 cut(s) 76, 148, 274, 296, 351
NlaIV GGNNCC 1 cut(s) 40
NmuCI GTSAC 2 cut(s) 256, 380
NspI RCATGY 1 cut(s) 76
PciI ACATGT 1 cut(s) 72
PcsI WCGNNNNNNNCGW 1 cut(s) 335
PkrI GCNGC 2 cut(s) 59, 233
PscI ACATGT 1 cut(s) 72
PshBI ATTAAT 1 cut(s) 324
Psp6I CCWGG 1 cut(s) 260
PspEI GGTNACC 1 cut(s) 256
PspGI CCWGG 1 cut(s) 260
PspN4I GGNNCC 1 cut(s) 40
PspPI GGNCC 4 cut(s) 39, 96, 155, 423
PsuI RGATCY 1 cut(s) 297
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SaqAI TTAA 2 cut(s) 324, 411
SatI GCNGC 2 cut(s) 58, 232
Sau3AI GATC 2 cut(s) 184, 297
Sau96I GGNCC 4 cut(s) 39, 96, 155, 423
ScrFI CCNGG 1 cut(s) 262
SetI ASST 8 cut(s) 62, 113, 144, 173, 263, 282, 291, 373
SinI GGWCC 3 cut(s) 39, 96, 423
SsiI CCGC 3 cut(s) 45, 254, 421
SspMI CTAG 1 cut(s) 427
StyD4I CCNGG 1 cut(s) 260
TaaI ACNGT 1 cut(s) 212
TaqI TCGA 3 cut(s) 120, 150, 167
TatI WGTACW 1 cut(s) 174
Tru1I TTAA 2 cut(s) 324, 411
Tru9I TTAA 2 cut(s) 324, 411
TseFI GTSAC 2 cut(s) 256, 380
TseI GCWGC 2 cut(s) 57, 231
Tsp45I GTSAC 2 cut(s) 256, 380
TspGWI ACGGA 3 cut(s) 26, 187, 290
VpaK11BI GGWCC 3 cut(s) 39, 96, 423
VspI ATTAAT 1 cut(s) 324
XceI RCATGY 1 cut(s) 76
XspI CTAG 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.