Rh3DG139500

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000166
Physical Location & Seq
Reverse (-)
11912222 .. 11912587
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG139500.1

Sequence Viewer

Length: 366 bp
ATGGAAGTTCCCAAGTTTCTCCTCCTGTTGCTATTTGCAGCAACATTTGCTCAGAGTCAAGAACGGTTACAAGGGATGCCAAGCTTAAGGAAAGGGAACTCCTTGAAAGTTGAGGAGGAGACCAACGTCTTGGTTTCACCAGATGGAACTTTTTCTAGTGGATTTTACAAAGTTGGTGCCAATGCCTCCTGTTATTCAATATGGTTCACCAATAGTGCCAATAAAACAATTGTCTGGATGGCTAACAGAGACAAGCCTGTGAGCAAAAGAGGCTCAAAGCTAACCCTCCATGGAAGTGGCAACCTGGTTTTGACTTTTGACAGATGCACTTGGTACACTCGTGTGGTCGACCAACACAATCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

121

Amino Acids

13.56

Weight (kDa)

9.47

Isoelectric Point (pI)

44.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 76 - 113 3.8e-07 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 176
AccI GTMKAC 1 cut(s) 348
AfaI GTAC 1 cut(s) 335
AflII CTTAAG 1 cut(s) 85
AgsI TTSAA 2 cut(s) 106, 198
AjnI CCWGG 1 cut(s) 303
AleI CACNNNNGTG 1 cut(s) 341
AluBI AGCT 2 cut(s) 84, 280
AluI AGCT 2 cut(s) 84, 280
Alw26I GTCTC 2 cut(s) 113, 243
ApeKI GCWGC 1 cut(s) 38
Asp700I GAANNNNTTC 1 cut(s) 151
AsuHPI GGTGA 2 cut(s) 129, 199
BaeI ACNNNNGTAYC 2 cut(s) 325, 358
BanI GGYRCC 1 cut(s) 176
BauI CACGAG 1 cut(s) 339
BbvI GCAGC 1 cut(s) 50
BccI CCATC 2 cut(s) 137, 232
BciT130I CCWGG 1 cut(s) 305
BcoDI GTCTC 2 cut(s) 113, 243
BfaI CTAG 1 cut(s) 156
BfrI CTTAAG 1 cut(s) 85
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
Bme1390I CCNGG 1 cut(s) 305
BmiI GGNNCC 1 cut(s) 178
BmrFI CCNGG 1 cut(s) 305
BmsI GCATC 2 cut(s) 66, 314
BoxI GACNNNNGTC 1 cut(s) 125
BsaI GGTCTC 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 289
BseBI CCWGG 1 cut(s) 305
BseDI CCNNGG 1 cut(s) 289
BseGI GGATG 2 cut(s) 81, 243
BseMII CTCAG 1 cut(s) 65
BseRI GAGGAG 3 cut(s) 11, 128, 131
BseXI GCAGC 1 cut(s) 50
BshNI GGYRCC 1 cut(s) 176
BsmAI GTCTC 2 cut(s) 113, 243
Bso31I GGTCTC 1 cut(s) 113
Bsp19I CCATGG 1 cut(s) 289
BspCNI CTCAG 1 cut(s) 64
BspLI GGNNCC 1 cut(s) 178
BspT107I GGYRCC 1 cut(s) 176
BspTI CTTAAG 1 cut(s) 85
BspTNI GGTCTC 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 289
BssSI CACGAG 1 cut(s) 339
BssT1I CCWWGG 1 cut(s) 289
Bst2BI CACGAG 1 cut(s) 339
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 1 cut(s) 66
BstAFI CTTAAG 1 cut(s) 85
BstAPI GCANNNNNTGC 1 cut(s) 47
BstDEI CTNAG 1 cut(s) 51
BstDSI CCRYGG 1 cut(s) 289
BstF5I GGATG 2 cut(s) 81, 243
BstMAI GTCTC 2 cut(s) 113, 243
BstMWI GCNNNNNNNGC 2 cut(s) 47, 270
BstNI CCWGG 1 cut(s) 305
BstPAI GACNNNNGTC 1 cut(s) 125
BstSCI CCNGG 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 50
BstXI CCANNNNNNTGG 2 cut(s) 130, 296
BtgI CCRYGG 1 cut(s) 289
BtsCI GGATG 2 cut(s) 81, 243
CsiI ACCWGGT 1 cut(s) 303
Csp6I GTAC 1 cut(s) 334
CviAII CATG 1 cut(s) 290
CviJI RGCY 5 cut(s) 84, 242, 256, 273, 280
CviKI_1 RGCY 5 cut(s) 84, 242, 256, 273, 280
CviQI GTAC 1 cut(s) 334
DdeI CTNAG 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 289
Eco31I GGTCTC 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 303
EcoT14I CCWWGG 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 289
FaeI CATG 1 cut(s) 293
FaiI YATR 2 cut(s) 202, 291
FatI CATG 1 cut(s) 289
FblI GTMKAC 1 cut(s) 348
Fnu4HI GCNGC 1 cut(s) 39
FokI GGATG 2 cut(s) 88, 250
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 1 cut(s) 156
GluI GCNGC 1 cut(s) 39
Hin1II CATG 1 cut(s) 293
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HindIII AAGCTT 1 cut(s) 82
HinfI GANTC 1 cut(s) 55
HphI GGTGA 2 cut(s) 129, 199
Hpy166II GTNNAC 3 cut(s) 207, 336, 349
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 2 cut(s) 59, 235
Hpy8I GTNNAC 3 cut(s) 207, 336, 349
HpyCH4III ACNGT 1 cut(s) 66
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 2 cut(s) 38, 327
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 270
HpyF3I CTNAG 1 cut(s) 51
HpySE526I ACGT 1 cut(s) 126
Hsp92II CATG 1 cut(s) 293
LpnPI CCDG 7 cut(s) 38, 153, 202, 220, 270, 290, 317
Lsp1109I GCAGC 1 cut(s) 50
LweI GCATC 2 cut(s) 66, 314
MabI ACCWGGT 1 cut(s) 303
MaeI CTAG 1 cut(s) 156
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 66
MfeI CAATTG 1 cut(s) 228
MluCI AATT 1 cut(s) 228
MlyI GAGTC 1 cut(s) 64
MnlI CCTC 6 cut(s) 32, 106, 109, 196, 263, 296
MroXI GAANNNNTTC 1 cut(s) 151
MseI TTAA 1 cut(s) 86
MslI CAYNNNNRTG 2 cut(s) 294, 341
MspCI CTTAAG 1 cut(s) 85
MspR9I CCNGG 1 cut(s) 305
MunI CAATTG 1 cut(s) 228
MvaI CCWGG 1 cut(s) 305
MwoI GCNNNNNNNGC 2 cut(s) 47, 270
NcoI CCATGG 1 cut(s) 289
NlaIII CATG 1 cut(s) 293
NlaIV GGNNCC 1 cut(s) 178
OliI CACNNNNGTG 1 cut(s) 341
PdmI GAANNNNTTC 1 cut(s) 151
PkrI GCNGC 1 cut(s) 40
PleI GAGTC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 63
PshAI GACNNNNGTC 1 cut(s) 125
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 1 cut(s) 178
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
RseI CAYNNNNRTG 2 cut(s) 294, 341
SalI GTCGAC 1 cut(s) 347
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 1 cut(s) 39
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 1 cut(s) 305
SetI ASST 4 cut(s) 86, 129, 282, 306
SexAI ACCWGGT 1 cut(s) 303
SfaNI GCATC 2 cut(s) 66, 314
SmiMI CAYNNNNRTG 2 cut(s) 294, 341
SmlI CTYRAG 1 cut(s) 85
SmoI CTYRAG 1 cut(s) 85
Sse9I AATT 1 cut(s) 228
SspMI CTAG 1 cut(s) 156
StyD4I CCNGG 1 cut(s) 303
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 1 cut(s) 66
TaiI ACGT 1 cut(s) 129
TaqI TCGA 1 cut(s) 348
TasI AATT 1 cut(s) 228
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TseI GCWGC 1 cut(s) 38
Vha464I CTTAAG 1 cut(s) 85
XmiI GTMKAC 1 cut(s) 348
XmnI GAANNNNTTC 1 cut(s) 151
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.