Rmu_co8390765.1_g000001

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8390765.1
OG0000166
Physical Location & Seq
Reverse (-)
2 .. 978
977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8390765.1_g000001.1.cds

Sequence Viewer

Length: 977 bp
atggctaacagagatacacctgtcagcattagacagtcgaagttagccctccgcagaaatggcaacctggtcttgactgatggagttggttcgacagtatggtcaaccaacactttgtctaatgcaagcatggagtttcatcttcgacttcttgaaaccggaaacttggtgctgatcaaccaagcagagaggatcatctggcagagttttgattctcccacagatacacttttaccatctcagcaatttgacaagagcaaaaccttggtgtccatgagaagtcgaggtacatacttgtctggtttctataacttcaaatttgatggtaataatgtcttgtacctcacccacgatggccctctactttcaagtgtttattggccaaagatggatacatctgtttttattagtggcagatcaccttacaatagctctagagtagcagtcttggataaacgaggggaatttgtatcaagtgacaatttaaagttcaatgcatctgactatggggttggtccaaagcgccgtctaaccttggattatgatggcctcttaagattgtacagtctaaatgaatcagctgggctttggcaagtctcatggttgcctgaaattgatttttgccgggttcatggcttgtgtggtgagtatggtatttgcacttacaaaccagaaccaacttgtacttgccctcatggtttttccatgaccgatccttcagactggtctaaaggctgctcacctccattcaatttgactcatgactcaaaaaagttggacttcatggagcttccttacacagattactatggatctgatttggacacatatcatatgggaatctcttttgaagaatgcaggaatacatgcctgaatgattcaaggtgcaaagggtttggatttgcactggacggatatggacaatgttaccctaagaactttcttcttaatggatttcgtgtgccgagtactcccag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

325

Amino Acids

36.66

Weight (kDa)

6.31

Isoelectric Point (pI)

40.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 100
AciI CCGC 1 cut(s) 52
AclWI GGATC 3 cut(s) 200, 707, 820
AcoI YGGCCR 1 cut(s) 380
AcsI RAATTY 2 cut(s) 317, 464
AcuI CTGAAG 1 cut(s) 702
AfaI GTAC 5 cut(s) 289, 341, 563, 685, 970
AflII CTTAAG 1 cut(s) 553
AgsI TTSAA 7 cut(s) 155, 316, 369, 493, 751, 851, 882
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 3 cut(s) 432, 581, 790
AluI AGCT 3 cut(s) 432, 581, 790
Alw26I GTCTC 1 cut(s) 601
AlwI GGATC 3 cut(s) 200, 707, 820
AoxI GGCC 3 cut(s) 355, 380, 547
ApeKI GCWGC 1 cut(s) 735
ApoI RAATTY 2 cut(s) 317, 464
AspLEI GCGC 1 cut(s) 525
AspS9I GGNCC 2 cut(s) 356, 515
AsuC2I CCSGG 1 cut(s) 626
AsuHPI GGTGA 4 cut(s) 337, 411, 656, 732
AvaII GGWCC 1 cut(s) 515
BaeI ACNNNNGTAYC 3 cut(s) 39, 384, 417
BalI TGGCCA 1 cut(s) 382
BarI GAAGNNNNNNTAC 2 cut(s) 271, 303
BbvI GCAGC 1 cut(s) 722
BccI CCATC 6 cut(s) 74, 244, 317, 347, 382, 539
BceAI ACGGC 1 cut(s) 510
BciT130I CCWGG 1 cut(s) 68
BciVI GTATCC 1 cut(s) 385
BclI TGATCA 1 cut(s) 174
BcnI CCSGG 1 cut(s) 626
BcoDI GTCTC 1 cut(s) 601
BfaI CTAG 1 cut(s) 435
BfoI RGCGCY 1 cut(s) 526
BfrI CTTAAG 1 cut(s) 553
BfuI GTATCC 1 cut(s) 385
BisI GCNGC 1 cut(s) 736
BlsI GCNGC 1 cut(s) 737
BmcAI AGTACT 1 cut(s) 970
Bme1390I CCNGG 2 cut(s) 68, 626
Bme18I GGWCC 1 cut(s) 515
BmgT120I GGNCC 2 cut(s) 356, 515
BmrFI CCNGG 2 cut(s) 68, 626
BmsI GCATC 1 cut(s) 506
BpuMI CCSGG 1 cut(s) 626
BsaJI CCNNGG 2 cut(s) 264, 534
BsaWI WCCGGW 1 cut(s) 158
Bse1I ACTGG 2 cut(s) 728, 912
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 2 cut(s) 264, 534
BseMII CTCAG 1 cut(s) 254
BseNI ACTGG 2 cut(s) 728, 912
BseXI GCAGC 1 cut(s) 722
BseYI CCCAGC 1 cut(s) 581
BshFI GGCC 3 cut(s) 357, 382, 549
BsiSI CCGG 2 cut(s) 159, 625
BsmAI GTCTC 1 cut(s) 601
BsmI GAATGC 1 cut(s) 860
BsnI GGCC 3 cut(s) 357, 382, 549
Bsp1407I TGTACA 1 cut(s) 561
Bsp143I GATC 5 cut(s) 174, 192, 416, 712, 812
BspACI CCGC 1 cut(s) 52
BspANI GGCC 3 cut(s) 357, 382, 549
BspCNI CTCAG 1 cut(s) 253
BspHI TCATGA 1 cut(s) 760
BspPI GGATC 3 cut(s) 200, 707, 820
BspTI CTTAAG 1 cut(s) 553
BsrGI TGTACA 1 cut(s) 561
BsrI ACTGG 2 cut(s) 728, 912
BssECI CCNNGG 2 cut(s) 264, 534
BssMI GATC 5 cut(s) 174, 192, 416, 712, 812
BssT1I CCWWGG 2 cut(s) 264, 534
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 3 cut(s) 36, 97, 566
BstAFI CTTAAG 1 cut(s) 553
BstAUI TGTACA 1 cut(s) 561
BstC8I GCNNGC 1 cut(s) 127
BstDEI CTNAG 2 cut(s) 240, 933
BstH2I RGCGCY 1 cut(s) 526
BstHHI GCGC 1 cut(s) 525
BstKTI GATC 5 cut(s) 177, 195, 419, 715, 815
BstMAI GTCTC 1 cut(s) 601
BstMBI GATC 5 cut(s) 174, 192, 416, 712, 812
BstMWI GCNNNNNNNGC 1 cut(s) 60
BstNI CCWGG 1 cut(s) 68
BstNSI RCATGY 1 cut(s) 870
BstSCI CCNGG 2 cut(s) 66, 624
BstV1I GCAGC 1 cut(s) 722
BstX2I RGATCY 1 cut(s) 812
BstYI RGATCY 1 cut(s) 812
BsuI GTATCC 1 cut(s) 385
BsuRI GGCC 3 cut(s) 357, 382, 549
BtsIMutI CAGTG 1 cut(s) 905
Cac8I GCNNGC 1 cut(s) 127
CciI TCATGA 1 cut(s) 760
CfoI GCGC 1 cut(s) 525
Cfr13I GGNCC 2 cut(s) 356, 515
CsiI ACCWGGT 1 cut(s) 66
Csp6I GTAC 5 cut(s) 288, 340, 562, 684, 969
CviAII CATG 9 cut(s) 130, 274, 600, 632, 695, 706, 761, 784, 867
CviQI GTAC 5 cut(s) 288, 340, 562, 684, 969
DdeI CTNAG 2 cut(s) 240, 933
DpnI GATC 5 cut(s) 176, 194, 418, 714, 814
DpnII GATC 5 cut(s) 174, 192, 416, 712, 812
DraI TTTAAA 1 cut(s) 486
DrdI GACNNNNNNGTC 1 cut(s) 100
DseDI GACNNNNNNGTC 1 cut(s) 100
EaeI YGGCCR 1 cut(s) 380
Eco130I CCWWGG 2 cut(s) 264, 534
Eco47I GGWCC 1 cut(s) 515
Eco57I CTGAAG 1 cut(s) 702
EcoRII CCWGG 1 cut(s) 66
EcoT14I CCWWGG 2 cut(s) 264, 534
EcoT22I ATGCAT 1 cut(s) 499
ErhI CCWWGG 2 cut(s) 264, 534
FaeI CATG 9 cut(s) 133, 277, 603, 635, 698, 709, 764, 787, 870
FalI AAGNNNNNCTT 2 cut(s) 764, 796
FatI CATG 9 cut(s) 129, 273, 599, 631, 694, 705, 760, 783, 866
FauNDI CATATG 1 cut(s) 834
FbaI TGATCA 1 cut(s) 174
Fnu4HI GCNGC 1 cut(s) 736
Fsp4HI GCNGC 1 cut(s) 736
FspBI CTAG 1 cut(s) 435
GlaI GCGC 1 cut(s) 524
GluI GCNGC 1 cut(s) 736
GsaI CCCAGC 1 cut(s) 585
HaeII RGCGCY 1 cut(s) 526
HaeIII GGCC 3 cut(s) 357, 382, 549
HapII CCGG 2 cut(s) 159, 625
HhaI GCGC 1 cut(s) 525
Hin1II CATG 9 cut(s) 133, 277, 603, 635, 698, 709, 764, 787, 870
Hin6I GCGC 1 cut(s) 523
HinP1I GCGC 1 cut(s) 523
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HinfI GANTC 6 cut(s) 212, 575, 757, 764, 840, 878
HpaII CCGG 2 cut(s) 159, 625
HphI GGTGA 4 cut(s) 337, 411, 656, 732
Hpy166II GTNNAC 1 cut(s) 105
Hpy188I TCNGA 3 cut(s) 502, 721, 817
Hpy188III TCNNGA 4 cut(s) 73, 152, 435, 761
Hpy8I GTNNAC 1 cut(s) 105
HpyAV CCTTC 1 cut(s) 726
HpyCH4III ACNGT 3 cut(s) 36, 97, 566
HpyCH4V TGCA 6 cut(s) 125, 497, 660, 858, 888, 905
HpyF10VI GCNNNNNNNGC 1 cut(s) 60
HpyF3I CTNAG 2 cut(s) 240, 933
Hsp92II CATG 9 cut(s) 133, 277, 603, 635, 698, 709, 764, 787, 870
HspAI GCGC 1 cut(s) 523
Ksp22I TGATCA 1 cut(s) 174
Kzo9I GATC 5 cut(s) 174, 192, 416, 712, 812
LmnI GCTCC 1 cut(s) 787
Lsp1109I GCAGC 1 cut(s) 722
LweI GCATC 1 cut(s) 506
MabI ACCWGGT 1 cut(s) 66
MaeI CTAG 1 cut(s) 435
MaeIII GTNAC 2 cut(s) 476, 926
MalI GATC 5 cut(s) 176, 194, 418, 714, 814
MboI GATC 5 cut(s) 174, 192, 416, 712, 812
MboII GAAGA 3 cut(s) 134, 863, 935
MflI RGATCY 1 cut(s) 812
MlsI TGGCCA 1 cut(s) 382
MluCI AATT 6 cut(s) 245, 317, 464, 481, 612, 751
MluNI TGGCCA 1 cut(s) 382
MlyI GAGTC 2 cut(s) 751, 758
MmeI TCCRAC 1 cut(s) 756
MnlI CCTC 9 cut(s) 59, 183, 278, 353, 369, 452, 560, 702, 753
Mox20I TGGCCA 1 cut(s) 382
Mph1103I ATGCAT 1 cut(s) 499
MscI TGGCCA 1 cut(s) 382
MseI TTAA 3 cut(s) 485, 554, 948
Msp20I TGGCCA 1 cut(s) 382
MspA1I CMGCKG 1 cut(s) 581
MspCI CTTAAG 1 cut(s) 553
MspI CCGG 2 cut(s) 159, 625
MspR9I CCNGG 2 cut(s) 68, 626
Mva1269I GAATGC 1 cut(s) 860
MvaI CCWGG 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 60
NciI CCSGG 1 cut(s) 626
NdeI CATATG 1 cut(s) 834
NdeII GATC 5 cut(s) 174, 192, 416, 712, 812
NlaIII CATG 9 cut(s) 133, 277, 603, 635, 698, 709, 764, 787, 870
NmuCI GTSAC 1 cut(s) 476
NsiI ATGCAT 1 cut(s) 499
NspI RCATGY 1 cut(s) 870
PagI TCATGA 1 cut(s) 760
PctI GAATGC 1 cut(s) 860
PfeI GAWTC 4 cut(s) 212, 575, 840, 878
PkrI GCNGC 1 cut(s) 737
PleI GAGTC 2 cut(s) 751, 758
PpsI GAGTC 2 cut(s) 751, 758
Psp6I CCWGG 1 cut(s) 66
PspFI CCCAGC 1 cut(s) 581
PspGI CCWGG 1 cut(s) 66
PspPI GGNCC 2 cut(s) 356, 515
PsuI RGATCY 1 cut(s) 812
PvuII CAGCTG 1 cut(s) 581
RsaI GTAC 5 cut(s) 289, 341, 563, 685, 970
RsaNI GTAC 5 cut(s) 288, 340, 562, 684, 969
SaqAI TTAA 3 cut(s) 485, 554, 948
SatI GCNGC 1 cut(s) 736
Sau3AI GATC 5 cut(s) 174, 192, 416, 712, 812
Sau96I GGNCC 2 cut(s) 356, 515
ScaI AGTACT 1 cut(s) 970
SchI GAGTC 2 cut(s) 751, 758
ScrFI CCNGG 2 cut(s) 68, 626
SexAI ACCWGGT 1 cut(s) 66
SfaNI GCATC 1 cut(s) 506
SinI GGWCC 1 cut(s) 515
SmlI CTYRAG 1 cut(s) 553
SmoI CTYRAG 1 cut(s) 553
Sse9I AATT 6 cut(s) 245, 317, 464, 481, 612, 751
SsiI CCGC 1 cut(s) 52
SspMI CTAG 1 cut(s) 435
StyD4I CCNGG 2 cut(s) 66, 624
StyI CCWWGG 2 cut(s) 264, 534
TaaI ACNGT 3 cut(s) 36, 97, 566
TaqI TCGA 4 cut(s) 38, 92, 145, 283
TaqII GACCGA 1 cut(s) 725
TasI AATT 6 cut(s) 245, 317, 464, 481, 612, 751
TatI WGTACW 3 cut(s) 561, 683, 968
TfiI GAWTC 4 cut(s) 212, 575, 840, 878
Tru1I TTAA 3 cut(s) 485, 554, 948
Tru9I TTAA 3 cut(s) 485, 554, 948
TscAI CASTG 1 cut(s) 912
TseFI GTSAC 1 cut(s) 476
TseI GCWGC 1 cut(s) 735
Tsp45I GTSAC 1 cut(s) 476
TspDTI ATGAA 4 cut(s) 128, 588, 620, 772
TspGWI ACGGA 1 cut(s) 927
TspRI CASTG 1 cut(s) 912
Vha464I CTTAAG 1 cut(s) 553
VpaK11BI GGWCC 1 cut(s) 515
XapI RAATTY 2 cut(s) 317, 464
XbaI TCTAGA 1 cut(s) 434
XceI RCATGY 1 cut(s) 870
XspI CTAG 1 cut(s) 435
ZrmI AGTACT 1 cut(s) 970
Zsp2I ATGCAT 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.