FvH4_6g12881

Receptor protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
7810957 .. 7811337
381 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g12881.t1

Sequence Viewer

Length: 381 bp
ATGTCTAAGTTGTTCAAAGACATTCATGATGAAGGTGTTGGATTTTCGAAAGTTCGTGGCACCAGAGGTTATATGGCTCCAGAGTGGATGGTGAACCTGAAAATTGATGCAAAGGCAGATGTCTACAGCTATGGCATTGTTCTGTTGGAGATACTGAGTGGAAAGAGTGCTTCTGTTCTGCTTTCAGCTTTTGCACAAGAGTACATTGAACACAACCAACTAGTACAATGTGTGACTGAAAAGATCAGAGTAGAAGGGCTTAAGGAAGTGATAGATCCTCGACTTCATCATGATATCAACAAAAAGAAGCTCGAAAGATTGATGAAGGTTGCTCTTATGAGCGTACAAGAAGATCGAAATGCACGACCTGCCATGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

127

Amino Acids

14.32

Weight (kDa)

8.67

Isoelectric Point (pI)

31.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 15 - 119 2e-10 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 23 - 125 4.3e-08 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 376
AccB1I GGYRCC 1 cut(s) 59
AccI GTMKAC 1 cut(s) 123
AclWI GGATC 1 cut(s) 269
AfaI GTAC 3 cut(s) 203, 225, 345
AflII CTTAAG 1 cut(s) 260
AgsI TTSAA 2 cut(s) 16, 209
AhlI ACTAGT 1 cut(s) 220
AluBI AGCT 3 cut(s) 129, 188, 310
AluI AGCT 3 cut(s) 129, 188, 310
AlwI GGATC 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 103
AsuII TTCGAA 1 cut(s) 47
BanI GGYRCC 1 cut(s) 59
BccI CCATC 1 cut(s) 82
BcuI ACTAGT 1 cut(s) 220
BfaI CTAG 1 cut(s) 221
BfmI CTRYAG 1 cut(s) 124
BfrI CTTAAG 1 cut(s) 260
BfuAI ACCTGC 1 cut(s) 376
BmiI GGNNCC 2 cut(s) 61, 78
BmsI GCATC 1 cut(s) 97
BpmI CTGGAG 1 cut(s) 63
Bpu14I TTCGAA 1 cut(s) 47
BseGI GGATG 1 cut(s) 93
BseMII CTCAG 1 cut(s) 146
BshNI GGYRCC 1 cut(s) 59
Bsp119I TTCGAA 1 cut(s) 47
Bsp143I GATC 3 cut(s) 243, 274, 352
BspCNI CTCAG 1 cut(s) 147
BspHI TCATGA 2 cut(s) 25, 289
BspLI GGNNCC 2 cut(s) 61, 78
BspMI ACCTGC 1 cut(s) 376
BspPI GGATC 1 cut(s) 269
BspT104I TTCGAA 1 cut(s) 47
BspT107I GGYRCC 1 cut(s) 59
BspTI CTTAAG 1 cut(s) 260
BssMI GATC 3 cut(s) 243, 274, 352
BstAFI CTTAAG 1 cut(s) 260
BstAPI GCANNNNNTGC 1 cut(s) 368
BstBI TTCGAA 1 cut(s) 47
BstDEI CTNAG 2 cut(s) 6, 155
BstF5I GGATG 1 cut(s) 93
BstKTI GATC 3 cut(s) 246, 277, 355
BstMBI GATC 3 cut(s) 243, 274, 352
BstMWI GCNNNNNNNGC 1 cut(s) 368
BstSFI CTRYAG 1 cut(s) 124
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
BtsCI GGATG 1 cut(s) 93
BveI ACCTGC 1 cut(s) 376
CciI TCATGA 2 cut(s) 25, 289
Csp6I GTAC 3 cut(s) 202, 224, 344
CviAII CATG 3 cut(s) 26, 290, 373
CviJI RGCY 5 cut(s) 77, 129, 188, 259, 310
CviKI_1 RGCY 5 cut(s) 77, 129, 188, 259, 310
CviQI GTAC 3 cut(s) 202, 224, 344
DdeI CTNAG 2 cut(s) 6, 155
DpnI GATC 3 cut(s) 245, 276, 354
DpnII GATC 3 cut(s) 243, 274, 352
Eco32I GATATC 1 cut(s) 295
EcoRV GATATC 1 cut(s) 295
FaeI CATG 3 cut(s) 29, 293, 376
FaiI YATR 7 cut(s) 27, 72, 74, 132, 291, 338, 374
FatI CATG 3 cut(s) 25, 289, 372
FblI GTMKAC 1 cut(s) 123
FokI GGATG 1 cut(s) 100
FspBI CTAG 1 cut(s) 221
GsuI CTGGAG 1 cut(s) 63
Hin1II CATG 3 cut(s) 29, 293, 376
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 2 cut(s) 94, 124
Hpy188I TCNGA 1 cut(s) 248
Hpy188III TCNNGA 3 cut(s) 26, 80, 290
Hpy8I GTNNAC 2 cut(s) 94, 124
HpyAV CCTTC 3 cut(s) 26, 248, 319
HpyCH4V TGCA 3 cut(s) 110, 194, 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 368
HpyF3I CTNAG 2 cut(s) 6, 155
Hsp92II CATG 3 cut(s) 29, 293, 376
Kzo9I GATC 3 cut(s) 243, 274, 352
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 3 cut(s) 76, 93, 110
LweI GCATC 1 cut(s) 97
MaeI CTAG 1 cut(s) 221
MaeIII GTNAC 1 cut(s) 232
MalI GATC 3 cut(s) 245, 276, 354
MboI GATC 3 cut(s) 243, 274, 352
MboII GAAGA 1 cut(s) 362
MflI RGATCY 1 cut(s) 274
MluCI AATT 1 cut(s) 102
MmeI TCCRAC 2 cut(s) 19, 126
MnlI CCTC 2 cut(s) 59, 288
MseI TTAA 1 cut(s) 261
MspCI CTTAAG 1 cut(s) 260
MwoI GCNNNNNNNGC 1 cut(s) 368
NdeII GATC 3 cut(s) 243, 274, 352
NlaIII CATG 3 cut(s) 29, 293, 376
NlaIV GGNNCC 2 cut(s) 61, 78
NmuCI GTSAC 1 cut(s) 232
NspV TTCGAA 1 cut(s) 47
PagI TCATGA 2 cut(s) 25, 289
PcsI WCGNNNNNNNCGW 1 cut(s) 361
PspN4I GGNNCC 2 cut(s) 61, 78
PsuI RGATCY 1 cut(s) 274
RsaI GTAC 3 cut(s) 203, 225, 345
RsaNI GTAC 3 cut(s) 202, 224, 344
SaqAI TTAA 1 cut(s) 261
Sau3AI GATC 3 cut(s) 243, 274, 352
SetI ASST 8 cut(s) 37, 70, 99, 131, 190, 312, 330, 370
SfaNI GCATC 1 cut(s) 97
SfcI CTRYAG 1 cut(s) 124
SfuI TTCGAA 1 cut(s) 47
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
SpeI ACTAGT 1 cut(s) 220
Sse9I AATT 1 cut(s) 102
SspMI CTAG 1 cut(s) 221
TaqI TCGA 4 cut(s) 47, 280, 312, 355
TasI AATT 1 cut(s) 102
TatI WGTACW 2 cut(s) 201, 223
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TseFI GTSAC 1 cut(s) 232
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 4 cut(s) 14, 45, 275, 338
Vha464I CTTAAG 1 cut(s) 260
XcmI CCANNNNNNNNNTGG 1 cut(s) 70
XmiI GTMKAC 1 cut(s) 123
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.