FvH4_5g04310

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000166
Physical Location & Seq
Reverse (-)
2555787 .. 2556836
1050 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g04310.t1

Sequence Viewer

Length: 1050 bp
ATGGGGTATCATCACCAAGCTGTTTCAACCACAAAGCTCCCTTCTTTTCTTATTTTCTGTTTCATCACTCTGTTTTTCTACTCTTCTGCAACTGCAAAAACCCACAACACATTAAAGAGAGGCTCTTCTCTCTCAGTGCAAAATGATGTATCAGACTTGCTGACCTCCCCAGACAACACTTTCACATGTGGCTTCTATGGTGTTGGCACAAATGCCTACTGGTTCTCCATCTGGTTCACCCACTCCAAGGACAGAACCGTAGTTTGGATGGCCAACAGAGACAGACCAGTCAATGGCTTGGGCTCTAGAGCCACACTGACCCGAGGTGGCTCCATGGTCTTGACAGACGTGGATGGAACACAAGTCTGGTCTCCCACCATCAACTCTAGTTCTGCCAACCGTGTTGAAAAGGCAGAGCTTTCCAATCATGGCAACCTTATTCTGAAGGGACCAAAAGGTGAAATTCTGTGGCAAAGCTTTAACTTTCCTACTGATACTCTTCTCCCTAACCAACTTTTTACCAAGGGCAAGAAGTTGGTGTCTAAGCTAGGGAGGGGTAACTTTGGTAGTGGCTATTTTAGTCTCTATTTTGATAGTGACAATGTGTTGAGGCTCGTCTATGATGGTCCTGACATTTCAAGTCTTTACTGGCCAACTCCTGGTTTTAATGTGTATCAGAATGGTAGAACAGATTATAACTGTAGCAGAATTGCTATTTTTGATGATCTGGGTTATTTTGTGTCCAGTGATGAGTTGCAGTTTAGTGCTAGTGACATGGGTTTGGGGCTGAAGAGGCGGTTGTCCATAGATTATGATGGGAACTTGAGACTCTATAGTCTTAAATTACAAGGGTCTTGGGTGGTGACTTGGCAAGCTATCATTCAGAGATGTAATGTGCATGGAATTTGTGGGAGGAATGGAATTTGCGCTTATACACCAGAGCCTAAATGTTCATGTCCTCCTGCCTATGAGGTGGTGGATAAAAATAACTGGAACAAGGGTTGCAAGCCTAAGTTCAACCTTACATGCTCAGAGCCGGTGAAATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

350

Amino Acids

39.03

Weight (kDa)

8.91

Isoelectric Point (pI)

27.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 86 - 174 1.5e-21 D-mannose binding lectin
S_locus_glycop PF00954 253 - 323 5.9e-09 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 696
AasI GACNNNNNNGTC 2 cut(s) 287, 834
AccB7I CCANNNNNTGG 2 cut(s) 293, 659
AciI CCGC 1 cut(s) 796
AcoI YGGCCR 2 cut(s) 270, 650
AcsI RAATTY 4 cut(s) 462, 903, 921, 1043
AcuI CTGAAG 2 cut(s) 464, 809
AfiI CCNNNNNNNGG 4 cut(s) 247, 264, 293, 659
AflIII ACRYGT 1 cut(s) 185
AgsI TTSAA 4 cut(s) 27, 407, 639, 1018
AjiI CACGTC 1 cut(s) 349
AjnI CCWGG 1 cut(s) 658
AjuI GAANNNNNNNTTGG 2 cut(s) 247, 279
AluBI AGCT 6 cut(s) 20, 37, 418, 477, 547, 875
AluI AGCT 6 cut(s) 20, 37, 418, 477, 547, 875
Alw26I GTCTC 4 cut(s) 273, 375, 587, 820
Ama87I CYCGRG 1 cut(s) 321
AoxI GGCC 2 cut(s) 270, 650
ApoI RAATTY 4 cut(s) 462, 903, 921, 1043
AspLEI GCGC 1 cut(s) 929
AspS9I GGNCC 2 cut(s) 449, 626
AsuHPI GGTGA 4 cut(s) 5, 229, 470, 874
AvaI CYCGRG 1 cut(s) 321
AvaII GGWCC 2 cut(s) 449, 626
BalI TGGCCA 2 cut(s) 272, 652
BanII GRGCYC 1 cut(s) 305
BccI CCATC 6 cut(s) 236, 262, 347, 386, 617, 809
BciT130I CCWGG 1 cut(s) 660
BcoDI GTCTC 4 cut(s) 273, 375, 587, 820
BfaI CTAG 4 cut(s) 306, 387, 548, 768
BfmI CTRYAG 2 cut(s) 700, 832
Bme1390I CCNGG 1 cut(s) 660
Bme18I GGWCC 2 cut(s) 449, 626
BmeT110I CYCGRG 1 cut(s) 321
BmgBI CACGTC 1 cut(s) 349
BmgT120I GGNCC 2 cut(s) 449, 626
BmiI GGNNCC 2 cut(s) 331, 450
BmrFI CCNGG 1 cut(s) 660
BpuEI CTTGAG 1 cut(s) 844
BsaI GGTCTC 1 cut(s) 375
BsaJI CCNNGG 4 cut(s) 246, 322, 333, 522
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bsc4I CCNNNNNNNGG 4 cut(s) 247, 264, 293, 659
Bse118I RCCGGY 1 cut(s) 1036
Bse1I ACTGG 5 cut(s) 224, 287, 653, 744, 995
BseBI CCWGG 1 cut(s) 660
BseDI CCNNGG 4 cut(s) 246, 322, 333, 522
BseGI GGATG 2 cut(s) 273, 358
BseLI CCNNNNNNNGG 4 cut(s) 247, 264, 293, 659
BseMII CTCAG 2 cut(s) 147, 1044
BseNI ACTGG 5 cut(s) 224, 287, 653, 744, 995
BshFI GGCC 2 cut(s) 272, 652
BsiHKCI CYCGRG 1 cut(s) 321
BsiSI CCGG 1 cut(s) 1037
BslFI GGGAC 1 cut(s) 462
BslI CCNNNNNNNGG 4 cut(s) 247, 264, 293, 659
BsmAI GTCTC 4 cut(s) 273, 375, 587, 820
BsmFI GGGAC 1 cut(s) 462
BsnI GGCC 2 cut(s) 272, 652
Bso31I GGTCTC 1 cut(s) 375
BsoBI CYCGRG 1 cut(s) 321
Bsp1286I GDGCHC 1 cut(s) 305
Bsp143I GATC 1 cut(s) 724
Bsp19I CCATGG 1 cut(s) 333
BspACI CCGC 1 cut(s) 796
BspANI GGCC 2 cut(s) 272, 652
BspCNI CTCAG 2 cut(s) 146, 1043
BspLI GGNNCC 2 cut(s) 331, 450
BspQI GCTCTTC 1 cut(s) 130
BspTNI GGTCTC 1 cut(s) 375
BsrFI RCCGGY 1 cut(s) 1036
BsrI ACTGG 5 cut(s) 224, 287, 653, 744, 995
BssAI RCCGGY 1 cut(s) 1036
BssECI CCNNGG 4 cut(s) 246, 322, 333, 522
BssMI GATC 1 cut(s) 724
BssT1I CCWWGG 3 cut(s) 246, 333, 522
Bst2UI CCWGG 1 cut(s) 660
Bst4CI ACNGT 3 cut(s) 259, 401, 701
Bst6I CTCTTC 4 cut(s) 88, 130, 504, 785
BstC8I GCNNGC 2 cut(s) 873, 1007
BstDEI CTNAG 4 cut(s) 133, 543, 1011, 1030
BstDSI CCRYGG 1 cut(s) 333
BstF5I GGATG 2 cut(s) 273, 358
BstHHI GCGC 1 cut(s) 929
BstKTI GATC 1 cut(s) 727
BstMAI GTCTC 4 cut(s) 273, 375, 587, 820
BstMBI GATC 1 cut(s) 724
BstMWI GCNNNNNNNGC 1 cut(s) 793
BstNI CCWGG 1 cut(s) 660
BstNSI RCATGY 2 cut(s) 189, 1029
BstSCI CCNGG 1 cut(s) 658
BstSFI CTRYAG 2 cut(s) 700, 832
BsuRI GGCC 2 cut(s) 272, 652
BtgI CCRYGG 1 cut(s) 333
BtrI CACGTC 1 cut(s) 349
BtsCI GGATG 2 cut(s) 273, 358
BtsIMutI CAGTG 3 cut(s) 141, 314, 751
Cac8I GCNNGC 2 cut(s) 873, 1007
CfoI GCGC 1 cut(s) 929
Cfr10I RCCGGY 1 cut(s) 1036
Cfr13I GGNCC 2 cut(s) 449, 626
CviAII CATG 7 cut(s) 186, 334, 428, 775, 899, 954, 1026
DdeI CTNAG 4 cut(s) 133, 543, 1011, 1030
DpnI GATC 1 cut(s) 726
DpnII GATC 1 cut(s) 724
DrdI GACNNNNNNGTC 2 cut(s) 287, 834
DseDI GACNNNNNNGTC 2 cut(s) 287, 834
EaeI YGGCCR 2 cut(s) 270, 650
Eam1104I CTCTTC 4 cut(s) 88, 130, 504, 785
EarI CTCTTC 4 cut(s) 88, 130, 504, 785
Eco130I CCWWGG 3 cut(s) 246, 333, 522
Eco24I GRGCYC 1 cut(s) 305
Eco31I GGTCTC 1 cut(s) 375
Eco47I GGWCC 2 cut(s) 449, 626
Eco57I CTGAAG 2 cut(s) 464, 809
Eco88I CYCGRG 1 cut(s) 321
EcoRII CCWGG 1 cut(s) 658
EcoT14I CCWWGG 3 cut(s) 246, 333, 522
EcoT38I GRGCYC 1 cut(s) 305
ErhI CCWWGG 3 cut(s) 246, 333, 522
FaeI CATG 7 cut(s) 189, 337, 431, 778, 902, 957, 1029
FaqI GGGAC 1 cut(s) 462
FatI CATG 7 cut(s) 185, 333, 427, 774, 898, 953, 1025
FokI GGATG 2 cut(s) 280, 365
FriOI GRGCYC 1 cut(s) 305
FspBI CTAG 4 cut(s) 306, 387, 548, 768
GlaI GCGC 1 cut(s) 928
HaeIII GGCC 2 cut(s) 272, 652
HapII CCGG 1 cut(s) 1037
HhaI GCGC 1 cut(s) 929
Hin1II CATG 7 cut(s) 189, 337, 431, 778, 902, 957, 1029
Hin6I GCGC 1 cut(s) 927
HinP1I GCGC 1 cut(s) 927
HindIII AAGCTT 1 cut(s) 475
HinfI GANTC 1 cut(s) 828
HpaII CCGG 1 cut(s) 1037
HphI GGTGA 4 cut(s) 5, 229, 470, 874
Hpy166II GTNNAC 1 cut(s) 237
Hpy188I TCNGA 5 cut(s) 154, 444, 678, 885, 1033
Hpy188III TCNNGA 3 cut(s) 306, 340, 629
Hpy8I GTNNAC 1 cut(s) 237
HpyAV CCTTC 2 cut(s) 51, 439
HpyCH4III ACNGT 3 cut(s) 259, 401, 701
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 6 cut(s) 89, 95, 139, 757, 898, 1005
HpyF10VI GCNNNNNNNGC 1 cut(s) 793
HpyF3I CTNAG 4 cut(s) 133, 543, 1011, 1030
HpySE526I ACGT 1 cut(s) 348
Hsp92II CATG 7 cut(s) 189, 337, 431, 778, 902, 957, 1029
HspAI GCGC 1 cut(s) 927
Kzo9I GATC 1 cut(s) 724
LguI GCTCTTC 1 cut(s) 130
LmnI GCTCC 2 cut(s) 42, 335
MaeI CTAG 4 cut(s) 306, 387, 548, 768
MaeII ACGT 1 cut(s) 348
MaeIII GTNAC 4 cut(s) 557, 596, 770, 862
MalI GATC 1 cut(s) 726
MboI GATC 1 cut(s) 724
MboII GAAGA 4 cut(s) 75, 117, 491, 802
MhlI GDGCHC 1 cut(s) 305
MlsI TGGCCA 2 cut(s) 272, 652
MluCI AATT 6 cut(s) 462, 708, 842, 903, 921, 1043
MluNI TGGCCA 2 cut(s) 272, 652
MlyI GAGTC 1 cut(s) 822
MnlI CCTC 9 cut(s) 113, 175, 317, 546, 603, 786, 906, 964, 969
Mox20I TGGCCA 2 cut(s) 272, 652
MscI TGGCCA 2 cut(s) 272, 652
MseI TTAA 4 cut(s) 113, 480, 666, 840
Msp20I TGGCCA 2 cut(s) 272, 652
MspI CCGG 1 cut(s) 1037
MspR9I CCNGG 1 cut(s) 660
MvaI CCWGG 1 cut(s) 660
MwoI GCNNNNNNNGC 1 cut(s) 793
NcoI CCATGG 1 cut(s) 333
NdeII GATC 1 cut(s) 724
NlaIII CATG 7 cut(s) 189, 337, 431, 778, 902, 957, 1029
NlaIV GGNNCC 2 cut(s) 331, 450
NmuCI GTSAC 3 cut(s) 596, 770, 862
NspI RCATGY 2 cut(s) 189, 1029
PciI ACATGT 1 cut(s) 185
PciSI GCTCTTC 1 cut(s) 130
PflMI CCANNNNNTGG 2 cut(s) 293, 659
PleI GAGTC 1 cut(s) 822
PpsI GAGTC 1 cut(s) 822
PscI ACATGT 1 cut(s) 185
PsiI TTATAA 1 cut(s) 696
Psp6I CCWGG 1 cut(s) 658
PspGI CCWGG 1 cut(s) 658
PspN4I GGNNCC 2 cut(s) 331, 450
PspPI GGNCC 2 cut(s) 449, 626
SapI GCTCTTC 1 cut(s) 130
SaqAI TTAA 4 cut(s) 113, 480, 666, 840
Sau3AI GATC 1 cut(s) 724
Sau96I GGNCC 2 cut(s) 449, 626
SchI GAGTC 1 cut(s) 822
ScrFI CCNGG 1 cut(s) 660
SduI GDGCHC 1 cut(s) 305
SfcI CTRYAG 2 cut(s) 700, 832
SinI GGWCC 2 cut(s) 449, 626
SmlI CTYRAG 1 cut(s) 823
SmoI CTYRAG 1 cut(s) 823
Sse9I AATT 6 cut(s) 462, 708, 842, 903, 921, 1043
SsiI CCGC 1 cut(s) 796
SspMI CTAG 4 cut(s) 306, 387, 548, 768
StyD4I CCNGG 1 cut(s) 658
StyI CCWWGG 3 cut(s) 246, 333, 522
TaaI ACNGT 3 cut(s) 259, 401, 701
TaiI ACGT 1 cut(s) 351
TasI AATT 6 cut(s) 462, 708, 842, 903, 921, 1043
Tru1I TTAA 4 cut(s) 113, 480, 666, 840
Tru9I TTAA 4 cut(s) 113, 480, 666, 840
TscAI CASTG 3 cut(s) 141, 321, 751
TseFI GTSAC 3 cut(s) 596, 770, 862
Tsp45I GTSAC 3 cut(s) 596, 770, 862
TspDTI ATGAA 2 cut(s) 52, 942
TspRI CASTG 3 cut(s) 141, 321, 751
Van91I CCANNNNNTGG 2 cut(s) 293, 659
VpaK11BI GGWCC 2 cut(s) 449, 626
XapI RAATTY 4 cut(s) 462, 903, 921, 1043
XbaI TCTAGA 1 cut(s) 305
XceI RCATGY 2 cut(s) 189, 1029
XspI CTAG 4 cut(s) 306, 387, 548, 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.