Rh6AG478300

Receptor protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
65955687 .. 65955968
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG478300.1

Sequence Viewer

Length: 282 bp
ATGGTGACCGGAAAGAACCCGACAATGGATGTGGAAATCAGTGATGGTGAGCAGAGAAGACTAATTATGTGGGTGAGGCAAAAACTAAATGGAACTGAAATTGCATCCAGAATCGGAGAGATCATAGATCCCTCGTTTGAAGGCAACTATGATGTGGAAAAGATGGAAATTTTGTTAACAGTAGCTTTACATTGTGTGGAAGAAGACAAAGATTCAAGACCAACCATGAGTCAAGTCGTTGAGATGCTTCAACACCACGGCAAAGAATCTCAGTGGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

93

Amino Acids

10.71

Weight (kDa)

4.82

Isoelectric Point (pI)

54.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 122
AcsI RAATTY 1 cut(s) 168
AfiI CCNNNNNNNGG 1 cut(s) 25
AgsI TTSAA 3 cut(s) 140, 216, 251
AluBI AGCT 1 cut(s) 185
AluI AGCT 1 cut(s) 185
AlwI GGATC 1 cut(s) 122
ApoI RAATTY 1 cut(s) 168
AsuHPI GGTGA 3 cut(s) 16, 59, 85
BbsI GAAGAC 2 cut(s) 64, 210
BccI CCATC 2 cut(s) 38, 157
BceAI ACGGC 1 cut(s) 274
BmsI GCATC 2 cut(s) 113, 234
BpiI GAAGAC 2 cut(s) 64, 210
BsaJI CCNNGG 1 cut(s) 256
BsaWI WCCGGW 1 cut(s) 8
Bsc4I CCNNNNNNNGG 1 cut(s) 25
BseDI CCNNGG 1 cut(s) 256
BseGI GGATG 2 cut(s) 34, 104
BseLI CCNNNNNNNGG 1 cut(s) 25
BsiSI CCGG 1 cut(s) 9
BslI CCNNNNNNNGG 1 cut(s) 25
Bsp143I GATC 2 cut(s) 120, 127
BspPI GGATC 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 256
BssMI GATC 2 cut(s) 120, 127
Bst4CI ACNGT 1 cut(s) 181
BstDEI CTNAG 1 cut(s) 270
BstDSI CCRYGG 1 cut(s) 256
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 2 cut(s) 34, 104
BstKTI GATC 2 cut(s) 123, 130
BstMBI GATC 2 cut(s) 120, 127
BstPI GGTNACC 1 cut(s) 4
BstV2I GAAGAC 2 cut(s) 64, 210
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
BtgI CCRYGG 1 cut(s) 256
BtsCI GGATG 2 cut(s) 34, 104
BtsIMutI CAGTG 2 cut(s) 46, 278
CspCI CAANNNNNGTGG 2 cut(s) 12, 47
CviAII CATG 1 cut(s) 226
CviJI RGCY 1 cut(s) 185
CviKI_1 RGCY 1 cut(s) 185
DdeI CTNAG 1 cut(s) 270
DpnI GATC 2 cut(s) 122, 129
DpnII GATC 2 cut(s) 120, 127
Eco91I GGTNACC 1 cut(s) 4
EcoO65I GGTNACC 1 cut(s) 4
FaeI CATG 1 cut(s) 229
FaiI YATR 4 cut(s) 68, 125, 150, 227
FatI CATG 1 cut(s) 225
FokI GGATG 2 cut(s) 41, 91
HapII CCGG 1 cut(s) 9
Hin1II CATG 1 cut(s) 229
HincII GTYRAC 1 cut(s) 177
HindII GTYRAC 1 cut(s) 177
HinfI GANTC 4 cut(s) 111, 212, 229, 266
HpaI GTTAAC 1 cut(s) 177
HpaII CCGG 1 cut(s) 9
HphI GGTGA 3 cut(s) 16, 59, 85
Hpy166II GTNNAC 1 cut(s) 177
Hpy188I TCNGA 1 cut(s) 116
Hpy188III TCNNGA 2 cut(s) 108, 216
Hpy8I GTNNAC 1 cut(s) 177
HpyAV CCTTC 1 cut(s) 134
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 1 cut(s) 104
HpyF3I CTNAG 1 cut(s) 270
Hsp92II CATG 1 cut(s) 229
KspAI GTTAAC 1 cut(s) 177
Kzo9I GATC 2 cut(s) 120, 127
LpnPI CCDG 2 cut(s) 22, 121
LweI GCATC 2 cut(s) 113, 234
MaeIII GTNAC 1 cut(s) 4
MalI GATC 2 cut(s) 122, 129
MboI GATC 2 cut(s) 120, 127
MboII GAAGA 3 cut(s) 69, 212, 215
MflI RGATCY 1 cut(s) 127
MluCI AATT 3 cut(s) 63, 99, 168
MlyI GAGTC 1 cut(s) 238
MnlI CCTC 2 cut(s) 69, 142
MseI TTAA 1 cut(s) 176
MspI CCGG 1 cut(s) 9
NdeII GATC 2 cut(s) 120, 127
NlaIII CATG 1 cut(s) 229
NmuCI GTSAC 1 cut(s) 4
PfeI GAWTC 3 cut(s) 111, 212, 266
PleI GAGTC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 237
PspEI GGTNACC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 127
SaqAI TTAA 1 cut(s) 176
Sau3AI GATC 2 cut(s) 120, 127
SchI GAGTC 1 cut(s) 238
SetI ASST 1 cut(s) 187
SfaNI GCATC 2 cut(s) 113, 234
SgeI CNNG 8 cut(s) 21, 31, 120, 145, 228, 238, 245, 269
Sse9I AATT 3 cut(s) 63, 99, 168
TaaI ACNGT 1 cut(s) 181
TasI AATT 3 cut(s) 63, 99, 168
TfiI GAWTC 3 cut(s) 111, 212, 266
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TscAI CASTG 2 cut(s) 46, 278
TseFI GTSAC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 4
TspRI CASTG 2 cut(s) 46, 278
XapI RAATTY 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.