Rorug07G0021800

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000166
Physical Location & Seq
Reverse (-)
1582976 .. 1583812
837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0021800.1

Sequence Viewer

Length: 576 bp
ATGGAATCCTCCAAAGTATTTCTCTTGTTTTTTCTTCTCTTTGCTATTCAGGTCGTCTTTGTAACTTGTACTCAATTTCAAGTTGGTGACAAGAGCAATGGATGGGAGGTCCCCAAATCAAAGAGTGACCAAGATATGTACAACCAATGGGCCTCTAAGAATAGGTTCAAAGTTGACGACACTCTCAATTTCAATTACAAGAAAAACTCAGACTCAGTTATGGTGGTGACGGAAGCTGAGTACGAAAAATGCCATTCCGATAATCCCATTTTCAGCTCTAACGATGGTGACTCGGTCTTCAAATTGGATCGACCCGGTTCGTTCTACTTCATTAGTGGGACTGCCGGACACTGCGAGAAAGGGCAGAAAATGATTGTCAAAGTCTTGGGATCACCGGCTGCTGGAACAGAAAGCCCACCACCTGCTCAATCAGCAAACCAGAATGCAACTGAATCACCAGATCATCATGATCATGATCATCATGACATGAAGAACAATGCAGTTGCAATGCATGCTGTAGCTGCCATCTCTTTTACAACTTCTGTAATATCATTTCTTGTGGTCTTTTTCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

191

Amino Acids

21.28

Weight (kDa)

5.69

Isoelectric Point (pI)

33.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 40 - 122 1.4e-23 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 430
Acc36I ACCTGC 1 cut(s) 430
AclWI GGATC 2 cut(s) 315, 397
AfaI GTAC 3 cut(s) 70, 140, 242
AfiI CCNNNNNNNGG 1 cut(s) 401
AgsI TTSAA 4 cut(s) 80, 169, 193, 301
AluBI AGCT 3 cut(s) 236, 276, 521
AluI AGCT 3 cut(s) 236, 276, 521
AlwI GGATC 2 cut(s) 315, 397
AoxI GGCC 1 cut(s) 150
ApeKI GCWGC 2 cut(s) 398, 521
Asp700I GAANNNNTTC 1 cut(s) 164
AspS9I GGNCC 2 cut(s) 109, 150
AsuC2I CCSGG 1 cut(s) 315
AsuHPI GGTGA 5 cut(s) 98, 238, 299, 384, 447
AvaII GGWCC 1 cut(s) 109
BbsI GAAGAC 1 cut(s) 289
BbvI GCAGC 2 cut(s) 385, 508
BccI CCATC 3 cut(s) 96, 278, 533
BclI TGATCA 2 cut(s) 469, 475
BcnI CCSGG 1 cut(s) 315
BfaI CTAG 1 cut(s) 574
BfmI CTRYAG 1 cut(s) 516
BfuAI ACCTGC 1 cut(s) 430
BisI GCNGC 2 cut(s) 399, 522
BlsI GCNGC 2 cut(s) 400, 523
Bme1390I CCNGG 1 cut(s) 315
Bme18I GGWCC 1 cut(s) 109
BmgT120I GGNCC 2 cut(s) 109, 150
BmiI GGNNCC 1 cut(s) 111
BmrFI CCNGG 1 cut(s) 315
BpiI GAAGAC 1 cut(s) 289
BpuMI CCSGG 1 cut(s) 315
BsaBI GATNNNNATC 1 cut(s) 474
Bsc4I CCNNNNNNNGG 1 cut(s) 401
Bse118I RCCGGY 1 cut(s) 394
Bse3DI GCAATG 2 cut(s) 103, 513
Bse8I GATNNNNATC 1 cut(s) 474
BseGI GGATG 1 cut(s) 107
BseJI GATNNNNATC 1 cut(s) 474
BseLI CCNNNNNNNGG 1 cut(s) 401
BseMI GCAATG 2 cut(s) 103, 513
BseMII CTCAG 3 cut(s) 222, 228, 228
BseXI GCAGC 2 cut(s) 385, 508
BshFI GGCC 1 cut(s) 152
BsiSI CCGG 3 cut(s) 315, 345, 395
BslFI GGGAC 2 cut(s) 95, 352
BslI CCNNNNNNNGG 1 cut(s) 401
BsmFI GGGAC 2 cut(s) 95, 352
BsmI GAATGC 1 cut(s) 448
BsnI GGCC 1 cut(s) 152
Bsp1407I TGTACA 1 cut(s) 138
Bsp143I GATC 5 cut(s) 307, 389, 460, 469, 475
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 3 cut(s) 221, 227, 229
BspHI TCATGA 3 cut(s) 466, 472, 481
BspLI GGNNCC 1 cut(s) 111
BspMI ACCTGC 1 cut(s) 430
BspPI GGATC 2 cut(s) 315, 397
BsrDI GCAATG 2 cut(s) 103, 513
BsrFI RCCGGY 1 cut(s) 394
BsrGI TGTACA 1 cut(s) 138
BssAI RCCGGY 1 cut(s) 394
BssMI GATC 5 cut(s) 307, 389, 460, 469, 475
BstAPI GCANNNNNTGC 1 cut(s) 512
BstAUI TGTACA 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 513
BstDEI CTNAG 4 cut(s) 156, 208, 214, 237
BstF5I GGATG 1 cut(s) 107
BstKTI GATC 5 cut(s) 310, 392, 463, 472, 478
BstMBI GATC 5 cut(s) 307, 389, 460, 469, 475
BstMWI GCNNNNNNNGC 3 cut(s) 431, 512, 521
BstNSI RCATGY 1 cut(s) 515
BstSCI CCNGG 1 cut(s) 313
BstSFI CTRYAG 1 cut(s) 516
BstV1I GCAGC 2 cut(s) 385, 508
BstV2I GAAGAC 1 cut(s) 289
BsuRI GGCC 1 cut(s) 152
BtsCI GGATG 1 cut(s) 107
BtsI GCAGTG 1 cut(s) 349
BtsIMutI CAGTG 1 cut(s) 349
BveI ACCTGC 1 cut(s) 430
Cac8I GCNNGC 1 cut(s) 513
CciI TCATGA 3 cut(s) 466, 472, 481
Cfr10I RCCGGY 1 cut(s) 394
Cfr13I GGNCC 2 cut(s) 109, 150
Csp6I GTAC 3 cut(s) 69, 139, 241
CviAII CATG 5 cut(s) 467, 473, 482, 487, 512
CviJI RGCY 6 cut(s) 152, 236, 276, 398, 414, 521
CviKI_1 RGCY 6 cut(s) 152, 236, 276, 398, 414, 521
CviQI GTAC 3 cut(s) 69, 139, 241
DdeI CTNAG 4 cut(s) 156, 208, 214, 237
DpnI GATC 5 cut(s) 309, 391, 462, 471, 477
DpnII GATC 5 cut(s) 307, 389, 460, 469, 475
Eco47I GGWCC 1 cut(s) 109
EcoO109I RGGNCCY 1 cut(s) 109
EcoT22I ATGCAT 1 cut(s) 513
FaeI CATG 5 cut(s) 470, 476, 485, 490, 515
FaiI YATR 7 cut(s) 137, 221, 468, 474, 483, 488, 513
FaqI GGGAC 2 cut(s) 95, 352
FatI CATG 5 cut(s) 466, 472, 481, 486, 511
FbaI TGATCA 2 cut(s) 469, 475
Fnu4HI GCNGC 2 cut(s) 399, 522
FokI GGATG 1 cut(s) 114
Fsp4HI GCNGC 2 cut(s) 399, 522
FspBI CTAG 1 cut(s) 574
GluI GCNGC 2 cut(s) 399, 522
HaeIII GGCC 1 cut(s) 152
HapII CCGG 3 cut(s) 315, 345, 395
Hin1II CATG 5 cut(s) 470, 476, 485, 490, 515
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 4 cut(s) 5, 212, 290, 452
HpaII CCGG 3 cut(s) 315, 345, 395
HphI GGTGA 5 cut(s) 98, 238, 299, 384, 447
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 2 cut(s) 211, 259
Hpy188III TCNNGA 3 cut(s) 467, 473, 482
Hpy8I GTNNAC 1 cut(s) 175
HpyCH4V TGCA 4 cut(s) 446, 500, 506, 511
HpyF10VI GCNNNNNNNGC 3 cut(s) 431, 512, 521
HpyF3I CTNAG 4 cut(s) 156, 208, 214, 237
Hsp92II CATG 5 cut(s) 470, 476, 485, 490, 515
Ksp22I TGATCA 2 cut(s) 469, 475
Kzo9I GATC 5 cut(s) 307, 389, 460, 469, 475
LpnPI CCDG 8 cut(s) 35, 328, 358, 387, 408, 435, 452, 471
Lsp1109I GCAGC 2 cut(s) 385, 508
MaeI CTAG 1 cut(s) 574
MaeIII GTNAC 5 cut(s) 61, 86, 125, 226, 287
MalI GATC 5 cut(s) 309, 391, 462, 471, 477
MboI GATC 5 cut(s) 307, 389, 460, 469, 475
MboII GAAGA 4 cut(s) 26, 289, 502, 562
MluCI AATT 4 cut(s) 74, 187, 193, 302
MlyI GAGTC 2 cut(s) 206, 284
MnlI CCTC 3 cut(s) 19, 100, 163
Mph1103I ATGCAT 1 cut(s) 513
MroXI GAANNNNTTC 1 cut(s) 164
MslI CAYNNNNRTG 1 cut(s) 471
MspI CCGG 3 cut(s) 315, 345, 395
MspR9I CCNGG 1 cut(s) 315
Mva1269I GAATGC 1 cut(s) 448
MwoI GCNNNNNNNGC 3 cut(s) 431, 512, 521
NciI CCSGG 1 cut(s) 315
NdeII GATC 5 cut(s) 307, 389, 460, 469, 475
NlaIII CATG 5 cut(s) 470, 476, 485, 490, 515
NlaIV GGNNCC 1 cut(s) 111
NmuCI GTSAC 4 cut(s) 86, 125, 226, 287
NsiI ATGCAT 1 cut(s) 513
NspI RCATGY 1 cut(s) 515
PaeI GCATGC 1 cut(s) 515
PagI TCATGA 3 cut(s) 466, 472, 481
PaqCI CACCTGC 1 cut(s) 430
PctI GAATGC 1 cut(s) 448
PdmI GAANNNNTTC 1 cut(s) 164
PfeI GAWTC 2 cut(s) 5, 452
PflFI GACNNNGTC 1 cut(s) 293
PkrI GCNGC 2 cut(s) 400, 523
PleI GAGTC 2 cut(s) 206, 284
PpsI GAGTC 2 cut(s) 206, 284
PpuMI RGGWCCY 1 cut(s) 109
Psp5II RGGWCCY 1 cut(s) 109
PspN4I GGNNCC 1 cut(s) 111
PspPI GGNCC 2 cut(s) 109, 150
PspPPI RGGWCCY 1 cut(s) 109
PsyI GACNNNGTC 1 cut(s) 293
RsaI GTAC 3 cut(s) 70, 140, 242
RsaNI GTAC 3 cut(s) 69, 139, 241
RseI CAYNNNNRTG 1 cut(s) 471
SatI GCNGC 2 cut(s) 399, 522
Sau3AI GATC 5 cut(s) 307, 389, 460, 469, 475
Sau96I GGNCC 2 cut(s) 109, 150
SchI GAGTC 2 cut(s) 206, 284
ScrFI CCNGG 1 cut(s) 315
SetI ASST 7 cut(s) 54, 111, 167, 238, 278, 424, 523
SfcI CTRYAG 1 cut(s) 516
SinI GGWCC 1 cut(s) 109
SmiMI CAYNNNNRTG 1 cut(s) 471
SphI GCATGC 1 cut(s) 515
Sse9I AATT 4 cut(s) 74, 187, 193, 302
SspMI CTAG 1 cut(s) 574
StyD4I CCNGG 1 cut(s) 313
TaqI TCGA 1 cut(s) 310
TaqII GACCGA 1 cut(s) 283
TasI AATT 4 cut(s) 74, 187, 193, 302
TatI WGTACW 2 cut(s) 68, 138
TfiI GAWTC 2 cut(s) 5, 452
TscAI CASTG 1 cut(s) 356
TseFI GTSAC 4 cut(s) 86, 125, 226, 287
TseI GCWGC 2 cut(s) 398, 521
Tsp45I GTSAC 4 cut(s) 86, 125, 226, 287
TspDTI ATGAA 2 cut(s) 319, 503
TspGWI ACGGA 1 cut(s) 245
TspRI CASTG 1 cut(s) 356
Tth111I GACNNNGTC 1 cut(s) 293
VpaK11BI GGWCC 1 cut(s) 109
XceI RCATGY 1 cut(s) 515
XmnI GAANNNNTTC 1 cut(s) 164
XspI CTAG 1 cut(s) 574
Zsp2I ATGCAT 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.