Rh3CG148900

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000166
Physical Location & Seq
Reverse (-)
12378959 .. 12380508
1550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG148900.1

Sequence Viewer

Length: 603 bp
ATGCAGGAATTCTTGCCTAGTGGATTCGAGATGCTTGGGATTCGGATATGCGCTGGTCGGATTGGACAATGTTACCCTAAGAGTCTTCTGCTTAATGGATACCGTATGTCAAATGTTAAGAGCATCTTGTATGTTAAGATTCGAAAAGATTTTCTGACCCCTGGTGCAGTCCAAAGCAAACTAGAAGCACATGATTTGAGTTGTTCCGCAGCACAGTTTTTTGTAAGTTGTGATCTTGAAACAGAAAAGGGCAATGGAAATCAGTATATGAAATACCTTATCGGAGTTGTGAGTTCCTTTGCAATAATTGAAGCAATCTGCATTGGTTTGGCATGGTGGTATGTGTTCCGAAAACAAGCTCATGAGGAACTGGTGAGCATGGGTTACATGACATTAGCCATAAATGCTGTAGGATTTAAACATTTCACCTATGCAGAACTAAAGAAAGCAACCAATGACTTCAAACAGGAGATAGGAAAAGGAAGGTTCGGAACAGTCTATAAAGGGGTTCTGGATGGTGAAAGATTTGTAGCTGTGAAGAGATTAGAAGGCATTCTGCAAGGAGATGCCGAATTTTGGGCAGAGTTACTTATGAAGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

200

Amino Acids

22.5

Weight (kDa)

8.73

Isoelectric Point (pI)

25.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 207
AcsI RAATTY 2 cut(s) 8, 572
AfiI CCNNNNNNNGG 1 cut(s) 576
AgsI TTSAA 3 cut(s) 239, 311, 463
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 3 cut(s) 359, 533, 600
AluI AGCT 3 cut(s) 359, 533, 600
ApeKI GCWGC 1 cut(s) 209
ApoI RAATTY 2 cut(s) 8, 572
Asp700I GAANNNNTTC 1 cut(s) 552
AspLEI GCGC 1 cut(s) 53
AsuHPI GGTGA 3 cut(s) 385, 418, 530
AsuII TTCGAA 1 cut(s) 142
BbsI GAAGAC 1 cut(s) 77
BbvI GCAGC 1 cut(s) 221
BccI CCATC 1 cut(s) 509
BciT130I CCWGG 1 cut(s) 162
BciVI GTATCC 1 cut(s) 92
BfaI CTAG 2 cut(s) 18, 182
BfmI CTRYAG 1 cut(s) 408
BfuI GTATCC 1 cut(s) 92
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
Bme1390I CCNGG 1 cut(s) 162
BmrFI CCNGG 1 cut(s) 162
BmsI GCATC 3 cut(s) 21, 132, 556
BpiI GAAGAC 1 cut(s) 77
Bpu14I TTCGAA 1 cut(s) 142
BsaJI CCNNGG 1 cut(s) 160
Bsc4I CCNNNNNNNGG 1 cut(s) 576
Bse1I ACTGG 1 cut(s) 375
Bse3DI GCAATG 1 cut(s) 259
BseBI CCWGG 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 1 cut(s) 520
BseLI CCNNNNNNNGG 1 cut(s) 576
BseMI GCAATG 1 cut(s) 259
BseNI ACTGG 1 cut(s) 375
BseXI GCAGC 1 cut(s) 221
BsgI GTGCAG 1 cut(s) 186
BslI CCNNNNNNNGG 1 cut(s) 576
BsmI GAATGC 1 cut(s) 552
Bsp119I TTCGAA 1 cut(s) 142
Bsp143I GATC 1 cut(s) 232
BspACI CCGC 1 cut(s) 207
BspHI TCATGA 1 cut(s) 361
BspQI GCTCTTC 1 cut(s) 590
BspT104I TTCGAA 1 cut(s) 142
BsrDI GCAATG 1 cut(s) 259
BsrI ACTGG 1 cut(s) 375
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 1 cut(s) 232
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 3 cut(s) 104, 216, 496
Bst6I CTCTTC 2 cut(s) 533, 590
BstBI TTCGAA 1 cut(s) 142
BstDEI CTNAG 1 cut(s) 78
BstF5I GGATG 1 cut(s) 520
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 1 cut(s) 235
BstMBI GATC 1 cut(s) 232
BstMWI GCNNNNNNNGC 1 cut(s) 404
BstNI CCWGG 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 160
BstSFI CTRYAG 1 cut(s) 408
BstV1I GCAGC 1 cut(s) 221
BstV2I GAAGAC 1 cut(s) 77
BsuI GTATCC 1 cut(s) 92
BtsCI GGATG 1 cut(s) 520
CciI TCATGA 1 cut(s) 361
CfoI GCGC 1 cut(s) 53
CviAII CATG 5 cut(s) 191, 333, 362, 379, 388
CviJI RGCY 4 cut(s) 359, 398, 533, 600
CviKI_1 RGCY 4 cut(s) 359, 398, 533, 600
DdeI CTNAG 1 cut(s) 78
DpnI GATC 1 cut(s) 234
DpnII GATC 1 cut(s) 232
DraI TTTAAA 1 cut(s) 418
Eam1104I CTCTTC 2 cut(s) 533, 590
EarI CTCTTC 2 cut(s) 533, 590
EcoRI GAATTC 1 cut(s) 8
EcoRII CCWGG 1 cut(s) 160
FaeI CATG 5 cut(s) 194, 336, 365, 382, 391
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FatI CATG 5 cut(s) 190, 332, 361, 378, 387
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 1 cut(s) 527
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 2 cut(s) 18, 182
GlaI GCGC 1 cut(s) 52
GluI GCNGC 1 cut(s) 210
HhaI GCGC 1 cut(s) 53
Hin1II CATG 5 cut(s) 194, 336, 365, 382, 391
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HinfI GANTC 4 cut(s) 24, 40, 82, 139
HphI GGTGA 3 cut(s) 385, 418, 530
Hpy188I TCNGA 6 cut(s) 45, 60, 156, 284, 350, 491
Hpy188III TCNNGA 4 cut(s) 28, 236, 362, 512
HpyAV CCTTC 2 cut(s) 477, 542
HpyCH4III ACNGT 3 cut(s) 104, 216, 496
HpyCH4V TGCA 6 cut(s) 4, 167, 302, 321, 434, 559
HpyF10VI GCNNNNNNNGC 1 cut(s) 404
HpyF3I CTNAG 1 cut(s) 78
Hsp92II CATG 5 cut(s) 194, 336, 365, 382, 391
HspAI GCGC 1 cut(s) 51
Kzo9I GATC 1 cut(s) 232
LguI GCTCTTC 1 cut(s) 590
LpnPI CCDG 6 cut(s) 39, 147, 174, 356, 452, 497
Lsp1109I GCAGC 1 cut(s) 221
LweI GCATC 3 cut(s) 21, 132, 556
MaeI CTAG 2 cut(s) 18, 182
MaeIII GTNAC 3 cut(s) 71, 383, 585
MalI GATC 1 cut(s) 234
MboI GATC 1 cut(s) 232
MboII GAAGA 2 cut(s) 77, 550
MluCI AATT 3 cut(s) 8, 306, 572
MlyI GAGTC 1 cut(s) 91
MmeI TCCRAC 1 cut(s) 38
MnlI CCTC 1 cut(s) 358
MroXI GAANNNNTTC 1 cut(s) 552
MseI TTAA 4 cut(s) 93, 117, 135, 417
MspR9I CCNGG 1 cut(s) 162
Mva1269I GAATGC 1 cut(s) 552
MvaI CCWGG 1 cut(s) 162
MwoI GCNNNNNNNGC 1 cut(s) 404
NdeII GATC 1 cut(s) 232
NlaIII CATG 5 cut(s) 194, 336, 365, 382, 391
NspV TTCGAA 1 cut(s) 142
PagI TCATGA 1 cut(s) 361
PciSI GCTCTTC 1 cut(s) 590
PctI GAATGC 1 cut(s) 552
PdmI GAANNNNTTC 1 cut(s) 552
PfeI GAWTC 3 cut(s) 24, 40, 139
PkrI GCNGC 1 cut(s) 211
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
SapI GCTCTTC 1 cut(s) 590
SaqAI TTAA 4 cut(s) 93, 117, 135, 417
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 1 cut(s) 232
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 162
SetI ASST 6 cut(s) 279, 361, 431, 488, 535, 602
SfaNI GCATC 3 cut(s) 21, 132, 556
SfcI CTRYAG 1 cut(s) 408
SfuI TTCGAA 1 cut(s) 142
Sse9I AATT 3 cut(s) 8, 306, 572
SsiI CCGC 1 cut(s) 207
SspMI CTAG 2 cut(s) 18, 182
StyD4I CCNGG 1 cut(s) 160
TaaI ACNGT 3 cut(s) 104, 216, 496
TaqI TCGA 2 cut(s) 27, 142
TasI AATT 3 cut(s) 8, 306, 572
TfiI GAWTC 3 cut(s) 24, 40, 139
Tru1I TTAA 4 cut(s) 93, 117, 135, 417
Tru9I TTAA 4 cut(s) 93, 117, 135, 417
TseI GCWGC 1 cut(s) 209
TspDTI ATGAA 1 cut(s) 284
XapI RAATTY 2 cut(s) 8, 572
XmnI GAANNNNTTC 1 cut(s) 552
XspI CTAG 2 cut(s) 18, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.