Rh3CG140700

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000166
Physical Location & Seq
Reverse (-)
11572130 .. 11572615
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG140700.1

Sequence Viewer

Length: 486 bp
ATGAGAGGCCAAGGTACATACTTATCTGGATTCTATAACTTCAAGTTCGATGATAACAGTATCTTGTTTCTCATCTACAATGGCCCTCTACTTTCTAGTGTTTATTGGCCCCAGATTGTTTCAACTGTTTTTGAAAGTGGTAGAAATCCTTACAACAGCTCTAGAGTGGCAATTTTAGATGTGGCTGGACAATTTATATCTAGTGACAATATGCAGTTCTATGCATCTGACTATGGGGTTGGTCCAAAGCGGCGTTTAACAATGGATTATGATGGCATCGTAAGATTGTACAGTCTTGATGACTCAACTGGGAATTGGAAACTGTCATGGTTGCCTGATGGTGTCGATGCATGCCTGGTTCAGGGCTTGTGTGGTGAATATGGTATTTGTACATACAAACCACTACCTACTTGTACTTGCCCTTCAGGGTTTTCCCTAAACGATCCTCAGACTGGTCCAAAGGCTGCTCACCTCCCTTCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

161

Amino Acids

17.8

Weight (kDa)

4.89

Isoelectric Point (pI)

35.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 83 - 145 1.5e-09 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 250
AclWI GGATC 1 cut(s) 437
AcuI CTGAAG 1 cut(s) 408
AfaI GTAC 4 cut(s) 16, 290, 391, 415
AfiI CCNNNNNNNGG 2 cut(s) 361, 452
AgsI TTSAA 4 cut(s) 43, 123, 134, 480
AjnI CCWGG 1 cut(s) 354
AluBI AGCT 1 cut(s) 159
AluI AGCT 1 cut(s) 159
AlwI GGATC 1 cut(s) 437
AoxI GGCC 3 cut(s) 7, 82, 107
ApeKI GCWGC 1 cut(s) 464
AspS9I GGNCC 4 cut(s) 83, 108, 242, 455
AsuHPI GGTGA 2 cut(s) 386, 461
AvaII GGWCC 2 cut(s) 242, 455
BarI GAAGNNNNNNTAC 2 cut(s) 406, 438
BbvI GCAGC 1 cut(s) 451
BccI CCATC 2 cut(s) 266, 332
BciT130I CCWGG 1 cut(s) 356
BfaI CTAG 3 cut(s) 96, 162, 201
BisI GCNGC 2 cut(s) 251, 465
BlsI GCNGC 2 cut(s) 252, 466
Bme1390I CCNGG 1 cut(s) 356
Bme18I GGWCC 2 cut(s) 242, 455
BmgT120I GGNCC 4 cut(s) 83, 108, 242, 455
BmiI GGNNCC 1 cut(s) 110
BmrFI CCNGG 1 cut(s) 356
BmrI ACTGGG 1 cut(s) 318
BmsI GCATC 3 cut(s) 233, 285, 337
BmuI ACTGGG 1 cut(s) 318
BsaJI CCNNGG 1 cut(s) 10
Bsc4I CCNNNNNNNGG 2 cut(s) 361, 452
Bse1I ACTGG 2 cut(s) 313, 457
BseBI CCWGG 1 cut(s) 356
BseDI CCNNGG 1 cut(s) 10
BseLI CCNNNNNNNGG 2 cut(s) 361, 452
BseMII CTCAG 1 cut(s) 461
BseNI ACTGG 2 cut(s) 313, 457
BseXI GCAGC 1 cut(s) 451
BshFI GGCC 3 cut(s) 9, 84, 109
BslI CCNNNNNNNGG 2 cut(s) 361, 452
BsnI GGCC 3 cut(s) 9, 84, 109
Bsp1407I TGTACA 2 cut(s) 288, 389
Bsp143I GATC 1 cut(s) 442
BspACI CCGC 1 cut(s) 250
BspANI GGCC 3 cut(s) 9, 84, 109
BspCNI CTCAG 1 cut(s) 460
BspLI GGNNCC 1 cut(s) 110
BspPI GGATC 1 cut(s) 437
BsrGI TGTACA 2 cut(s) 288, 389
BsrI ACTGG 2 cut(s) 313, 457
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 1 cut(s) 442
BssT1I CCWWGG 1 cut(s) 10
Bst2UI CCWGG 1 cut(s) 356
Bst4CI ACNGT 4 cut(s) 59, 127, 293, 324
BstAUI TGTACA 2 cut(s) 288, 389
BstC8I GCNNGC 1 cut(s) 352
BstDEI CTNAG 1 cut(s) 447
BstENI CCTNNNNNAGG 1 cut(s) 359
BstKTI GATC 1 cut(s) 445
BstMBI GATC 1 cut(s) 442
BstNI CCWGG 1 cut(s) 356
BstNSI RCATGY 1 cut(s) 354
BstSCI CCNGG 1 cut(s) 354
BstV1I GCAGC 1 cut(s) 451
BsuRI GGCC 3 cut(s) 9, 84, 109
Cac8I GCNNGC 1 cut(s) 352
Cfr13I GGNCC 4 cut(s) 83, 108, 242, 455
Csp6I GTAC 4 cut(s) 15, 289, 390, 414
CviAII CATG 2 cut(s) 327, 351
CviJI RGCY 7 cut(s) 9, 84, 109, 159, 185, 366, 464
CviKI_1 RGCY 7 cut(s) 9, 84, 109, 159, 185, 366, 464
CviQI GTAC 4 cut(s) 15, 289, 390, 414
DdeI CTNAG 1 cut(s) 447
DpnI GATC 1 cut(s) 444
DpnII GATC 1 cut(s) 442
Eco130I CCWWGG 1 cut(s) 10
Eco47I GGWCC 2 cut(s) 242, 455
Eco57I CTGAAG 1 cut(s) 408
EcoNI CCTNNNNNAGG 1 cut(s) 359
EcoRII CCWGG 1 cut(s) 354
EcoT14I CCWWGG 1 cut(s) 10
EcoT22I ATGCAT 2 cut(s) 226, 352
ErhI CCWWGG 1 cut(s) 10
FaeI CATG 2 cut(s) 330, 354
FatI CATG 2 cut(s) 326, 350
Fnu4HI GCNGC 2 cut(s) 251, 465
Fsp4HI GCNGC 2 cut(s) 251, 465
FspBI CTAG 3 cut(s) 96, 162, 201
GluI GCNGC 2 cut(s) 251, 465
HaeIII GGCC 3 cut(s) 9, 84, 109
Hin1II CATG 2 cut(s) 330, 354
HinfI GANTC 2 cut(s) 30, 302
HphI GGTGA 2 cut(s) 386, 461
Hpy188I TCNGA 2 cut(s) 229, 450
Hpy188III TCNNGA 3 cut(s) 27, 162, 296
HpyAV CCTTC 2 cut(s) 432, 486
HpyCH4III ACNGT 4 cut(s) 59, 127, 293, 324
HpyCH4V TGCA 3 cut(s) 214, 224, 350
HpyF3I CTNAG 1 cut(s) 447
Hsp92II CATG 2 cut(s) 330, 354
Kzo9I GATC 1 cut(s) 442
Lsp1109I GCAGC 1 cut(s) 451
LweI GCATC 3 cut(s) 233, 285, 337
MaeI CTAG 3 cut(s) 96, 162, 201
MaeIII GTNAC 1 cut(s) 203
MalI GATC 1 cut(s) 444
MboI GATC 1 cut(s) 442
MluCI AATT 4 cut(s) 171, 191, 313, 480
MlyI GAGTC 1 cut(s) 296
MnlI CCTC 3 cut(s) 96, 456, 482
Mph1103I ATGCAT 2 cut(s) 226, 352
MseI TTAA 1 cut(s) 257
MspR9I CCNGG 1 cut(s) 356
MvaI CCWGG 1 cut(s) 356
NdeII GATC 1 cut(s) 442
NlaIII CATG 2 cut(s) 330, 354
NlaIV GGNNCC 1 cut(s) 110
NmuCI GTSAC 1 cut(s) 203
NsiI ATGCAT 2 cut(s) 226, 352
NspI RCATGY 1 cut(s) 354
PaeI GCATGC 1 cut(s) 354
PfeI GAWTC 1 cut(s) 30
PkrI GCNGC 2 cut(s) 252, 466
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
Psp6I CCWGG 1 cut(s) 354
PspGI CCWGG 1 cut(s) 354
PspN4I GGNNCC 1 cut(s) 110
PspPI GGNCC 4 cut(s) 83, 108, 242, 455
RsaI GTAC 4 cut(s) 16, 290, 391, 415
RsaNI GTAC 4 cut(s) 15, 289, 390, 414
SaqAI TTAA 1 cut(s) 257
SatI GCNGC 2 cut(s) 251, 465
Sau3AI GATC 1 cut(s) 442
Sau96I GGNCC 4 cut(s) 83, 108, 242, 455
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 1 cut(s) 356
SetI ASST 4 cut(s) 16, 161, 409, 474
SfaNI GCATC 3 cut(s) 233, 285, 337
SinI GGWCC 2 cut(s) 242, 455
SphI GCATGC 1 cut(s) 354
Sse9I AATT 4 cut(s) 171, 191, 313, 480
SsiI CCGC 1 cut(s) 250
SspMI CTAG 3 cut(s) 96, 162, 201
StyD4I CCNGG 1 cut(s) 354
StyI CCWWGG 1 cut(s) 10
TaaI ACNGT 4 cut(s) 59, 127, 293, 324
TaqI TCGA 2 cut(s) 48, 345
TasI AATT 4 cut(s) 171, 191, 313, 480
TatI WGTACW 3 cut(s) 288, 389, 413
TauI GCSGC 1 cut(s) 253
TfiI GAWTC 1 cut(s) 30
Tru1I TTAA 1 cut(s) 257
Tru9I TTAA 1 cut(s) 257
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 1 cut(s) 464
Tsp45I GTSAC 1 cut(s) 203
VpaK11BI GGWCC 2 cut(s) 242, 455
XagI CCTNNNNNAGG 1 cut(s) 359
XbaI TCTAGA 1 cut(s) 161
XceI RCATGY 1 cut(s) 354
XspI CTAG 3 cut(s) 96, 162, 201
Zsp2I ATGCAT 2 cut(s) 226, 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.