RchiOBHm_Chr3g0464941

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000166
Physical Location & Seq
Reverse (-)
11877712 .. 11880018
2307 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43112

Sequence Viewer

Length: 2307 bp
ATGCCAAGCTTAAAGCAAGGGAACTCCTTGAAAGTTGAGGAAGAGAGCAACTTCTTGGTTTCACCAAATGGAACCTTTTCGAGCGGATTTTACAAAGTTGGCGCCAATGCCTCCTGTTATTCAATATGGTTCACAAATAGTGCCGACAAAACAGTTGTCTGGATGGCTAATCGAGATAAGCCTGTCAGCGAAAGACGCTCGAAGCTAACCCTCCATGGAAATGGCAACCTGGTTTTGACTGATGCACTAGGTTCGGTTGTGTGGTCAACCAACACAATCTCTAAGGAAGTCATGGAACTTCAGCTTCTTGAAACAGGAAACTTGGTGCTGAGGAACCAAGACGACAGGATCATCTGGCAGAGTTTTGATTCTCCAACGGATACACTTCTACCATCACAACCACTCACCAAGAACACAACCTTGGTGTCCATGAGAAGCCAAGGTACATACTTATCTGGATTCTATAACTTCAAGTTCGATGATAACAGTATCTTGTTTCTCATCTACAATGGCCCTATACTTTCTAGTGTTTATTGGCCCCAGATTGTTTCAACTGTTTTTGAAAGTGGTAGAAATCCTTACAACAGCTCTAGAGTGGCAATTTTAGATGTGGCTGGACAATTTATATCTAGTGACAATATGCAGTTCTATGCATCTGACTATGGGGTTGGTCCAAAGCGGCGTTTAACAATGGATTATGATGGCATCTTAAGATTGTACAGTCTTGATGAATCAGCCGGGAATTGGAAACTGTCATGGTTGCCTGATGGTGTTGATGCATGCCTGGTTCAGGGCTTATGTGGTGAATATGGTATTTGCACATACAAACCACTACCTACTTGTACTTGCCCTTCAGGGTTTTCCCTAAACGTTCCCTCAGACTGGTCCAAAGGCTGCTCACCTCCCTTCAATTTGACTCAACTCACTCAAGATACAAGCAAGCTAGACTTCCTGGAGCTCCCTTACACAGATTACTATGGATATGACTTGGAAACCTATCAACTTGGAATTTCTTTTGAAGCATGCAGGAATTCATGCCTAGTGGATTCTAGATGCTTGGGATTCGGATATGCGCTGGACGGATTAGGACAATGTTACCCTAAGAGTCTTCTGCTTAATGGATACCGTATGTCAAATGTTAAGAGCATCTTGTATGTTAAGATTCCAAAAGATTTTCTGACCCCTGGTGCAGTCCAGAGCAAACTAGAAGCACATGATTTGAGTTGTTCCGCAGCTCGTTTTTTTGTAAGTAGTGATCTTGAAACAGAAAAGGGCAATGGAAATCAGTATATGAAATACCTTATCGGATTTGTGAGTTCCTTTGCAATAATTGAAGCAATCTGCATTGGTTTGGCATGGTGGTATGTGTTCCGAAAACAAGCTCATGAGGAACTGGTGAACATGGGTTACATGACATTAGCCACAAATGCTGTAGGATTTAAACATTTCACCTATGCAGAACTAAAGAAAGTAACCAATGACTTCAAACAGGAGATAGGAAAAGGAGGGTTCGGAACAGTCTATAAAGGGGTTCTGGATGGTGAAAGATTTGTAGCTGTGAAGAGATTAGAAGGCATTCTGCAAGGAGATGCCGAATTTTGGGCAGAGGTGAGTGTCATAGGGAATATCAATCATATGAACTTGGTTAAACTATATGGTTTCTGTGCTGATAATAATCATAAGCTATTGGTGTATGAGTACCTGGAGAATGGATCCTTGGATAAACTCTTGTTCTCAGATGTTGAACTTGGATTGGAAAAGCGGTACAAGATTGCATTAGGCACTGCAAAGGGTTTGTCATATCTACATGAGGAGTGCCTTGAATGGGTACTCCACTGTGATGTAAAGCCTCAAAATATACTGTTAGATGACCATCTTGAACCTAAGGTGGCAGATTTTGGCATGTCCAAGTTGTTCAAAGACATTAATGATGAAGGCAATGGATTTTCTAGAGTTCGAGGCACCAGAGGTTATATGGCTCCAGAGTGGATGGTGAATCTGAAAATTGATGCAAAGGCAGATGTCTACAGCTATGGGATTGTTCTGTTGGAGCTACTGACTGGAAAGAGTGCTTCTATTCTGCTTTCAGCTTTTGCACGAGAGTACATTGAACACAACCAACTGGTACAATGTGTGACTGAAAAGATCAGAGTCGAAGGGATTAAGGAAGTGATAGATCCGCGACTTCATCATGATTTCAACAAAAAGAAGCTTGAAAGATTGATGAAGGTTGCTCTTTTGTGTGTACAAGAAGATCGAAGTGCAAGACCTGCCATGAGTAAGGTGGTGGAGCTTCTACTTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

768

Amino Acids

86.24

Weight (kDa)

5.65

Isoelectric Point (pI)

33.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 51 - 139 4.7e-26 D-mannose binding lectin
S_locus_glycop PF00954 226 - 288 2e-08 S-locus glycoprotein domain
PK_Tyr_Ser-Thr PF07714 495 - 766 5.9e-43 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 496 - 763 2.2e-48 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2278
AccB1I GGYRCC 2 cut(s) 101, 1961
AccBSI CCGCTC 1 cut(s) 84
AccI GTMKAC 1 cut(s) 2025
AccII CGCG 1 cut(s) 2182
AciI CCGC 5 cut(s) 84, 679, 1230, 1762, 2180
AclI AACGTT 1 cut(s) 870
AclWI GGATC 4 cut(s) 356, 1707, 1720, 2171
AcsI RAATTY 3 cut(s) 1008, 1030, 1595
AcuI CTGAAG 2 cut(s) 284, 837
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 9 cut(s) 445, 719, 844, 1700, 1766, 1830, 2105, 2127, 2247
AfiI CCNNNNNNNGG 5 cut(s) 744, 790, 882, 1599, 1825
AflII CTTAAG 1 cut(s) 709
AjnI CCWGG 5 cut(s) 228, 783, 951, 1183, 1701
AjuI GAANNNNNNNTTGG 4 cut(s) 404, 436, 1700, 1732
Alw21I GWGCWC 1 cut(s) 960
AlwI GGATC 4 cut(s) 356, 1707, 1720, 2171
AoxI GGCC 2 cut(s) 511, 536
ApeKI GCWGC 2 cut(s) 894, 1232
ApoI RAATTY 3 cut(s) 1008, 1030, 1595
ArsI GACNNNNNNTTYG 4 cut(s) 141, 173, 1781, 1813
AseI ATTAAT 1 cut(s) 1926
Asp700I GAANNNNTTC 2 cut(s) 76, 1575
AspLEI GCGC 2 cut(s) 104, 1075
AspS9I GGNCC 4 cut(s) 512, 537, 671, 885
AsuC2I CCSGG 1 cut(s) 739
AsuHPI GGTGA 9 cut(s) 54, 397, 815, 891, 1408, 1441, 1553, 1621, 2005
AvaII GGWCC 2 cut(s) 671, 885
AxyI CCTNAGG 1 cut(s) 1884
BamHI GGATCC 1 cut(s) 1712
BanI GGYRCC 2 cut(s) 101, 1961
BanII GRGCYC 1 cut(s) 960
BarI GAAGNNNNNNTAC 4 cut(s) 427, 459, 835, 867
BauI CACGAG 1 cut(s) 2097
BbsI GAAGAC 1 cut(s) 1100
Bbv12I GWGCWC 1 cut(s) 960
BbvCI CCTCAGC 1 cut(s) 329
BbvI GCAGC 2 cut(s) 881, 1244
BccI CCATC 7 cut(s) 157, 400, 695, 761, 1532, 1881, 1984
BcgI CGANNNNNNTGC 2 cut(s) 234, 268
BciT130I CCWGG 5 cut(s) 230, 785, 953, 1185, 1703
BciVI GTATCC 2 cut(s) 373, 1115
BcnI CCSGG 1 cut(s) 739
BfaI CTAG 9 cut(s) 248, 525, 591, 630, 944, 1040, 1050, 1205, 1950
BfmI CTRYAG 2 cut(s) 1431, 2026
BfoI RGCGCY 1 cut(s) 105
BfrI CTTAAG 1 cut(s) 709
BfuAI ACCTGC 1 cut(s) 2278
BfuI GTATCC 2 cut(s) 373, 1115
BisI GCNGC 3 cut(s) 680, 895, 1233
BlsI GCNGC 3 cut(s) 681, 896, 1234
Bme1390I CCNGG 6 cut(s) 230, 739, 785, 953, 1185, 1703
Bme18I GGWCC 2 cut(s) 671, 885
BmgT120I GGNCC 4 cut(s) 512, 537, 671, 885
BmiI GGNNCC 7 cut(s) 73, 103, 335, 539, 1714, 1963, 1980
BmrFI CCNGG 6 cut(s) 230, 739, 785, 953, 1185, 1703
BmsI GCATC 8 cut(s) 232, 662, 714, 766, 1043, 1155, 1579, 1999
BpiI GAAGAC 1 cut(s) 1100
BpmI CTGGAG 3 cut(s) 974, 1724, 1965
Bpu10I CCTNAGC 1 cut(s) 329
BpuEI CTTGAG 1 cut(s) 912
BpuMI CCSGG 1 cut(s) 739
BsaBI GATNNNNATC 2 cut(s) 1674, 1872
BsaHI GRCGYC 1 cut(s) 102
BsaJI CCNNGG 5 cut(s) 214, 420, 439, 1183, 1716
Bsc4I CCNNNNNNNGG 5 cut(s) 744, 790, 882, 1599, 1825
Bse1I ACTGG 4 cut(s) 887, 1398, 2065, 2127
Bse21I CCTNAGG 1 cut(s) 1884
Bse3DI GCAATG 2 cut(s) 1282, 1945
Bse8I GATNNNNATC 2 cut(s) 1674, 1872
BseBI CCWGG 5 cut(s) 230, 785, 953, 1185, 1703
BseDI CCNNGG 5 cut(s) 214, 420, 439, 1183, 1716
BseGI GGATG 3 cut(s) 168, 1543, 1995
BseJI GATNNNNATC 2 cut(s) 1674, 1872
BseLI CCNNNNNNNGG 5 cut(s) 744, 790, 882, 1599, 1825
BseMI GCAATG 2 cut(s) 1282, 1945
BseMII CTCAG 3 cut(s) 320, 891, 1749
BseNI ACTGG 4 cut(s) 887, 1398, 2065, 2127
BseRI GAGGAG 1 cut(s) 1826
BseXI GCAGC 2 cut(s) 881, 1244
BsgI GTGCAG 1 cut(s) 1209
Bsh1236I CGCG 1 cut(s) 2182
BshFI GGCC 2 cut(s) 513, 538
BshNI GGYRCC 2 cut(s) 101, 1961
BsiHKAI GWGCWC 1 cut(s) 960
BsiSI CCGG 1 cut(s) 738
BslI CCNNNNNNNGG 5 cut(s) 744, 790, 882, 1599, 1825
BsmI GAATGC 1 cut(s) 1575
BsnI GGCC 2 cut(s) 513, 538
Bsp1286I GDGCHC 1 cut(s) 960
Bsp1407I TGTACA 2 cut(s) 717, 2245
Bsp143I GATC 6 cut(s) 348, 1255, 1712, 2145, 2176, 2254
Bsp19I CCATGG 1 cut(s) 214
BspACI CCGC 5 cut(s) 84, 679, 1230, 1762, 2180
BspANI GGCC 2 cut(s) 513, 538
BspCNI CTCAG 3 cut(s) 321, 890, 1748
BspFNI CGCG 1 cut(s) 2182
BspHI TCATGA 2 cut(s) 1384, 2191
BspLI GGNNCC 7 cut(s) 73, 103, 335, 539, 1714, 1963, 1980
BspMI ACCTGC 1 cut(s) 2278
BspPI GGATC 4 cut(s) 356, 1707, 1720, 2171
BspT107I GGYRCC 2 cut(s) 101, 1961
BspTI CTTAAG 1 cut(s) 709
BsrBI CCGCTC 1 cut(s) 84
BsrDI GCAATG 2 cut(s) 1282, 1945
BsrGI TGTACA 2 cut(s) 717, 2245
BsrI ACTGG 4 cut(s) 887, 1398, 2065, 2127
BssECI CCNNGG 5 cut(s) 214, 420, 439, 1183, 1716
BssMI GATC 6 cut(s) 348, 1255, 1712, 2145, 2176, 2254
BssNI GRCGYC 1 cut(s) 102
BssSI CACGAG 1 cut(s) 2097
BssT1I CCWWGG 4 cut(s) 214, 420, 439, 1716
Bst2BI CACGAG 1 cut(s) 2097
Bst2UI CCWGG 5 cut(s) 230, 785, 953, 1185, 1703
Bst4CI ACNGT 9 cut(s) 154, 488, 556, 722, 753, 1127, 1519, 1838, 1863
Bst6I CTCTTC 2 cut(s) 36, 1556
BstACI GRCGYC 1 cut(s) 102
BstAFI CTTAAG 1 cut(s) 709
BstAPI GCANNNNNTGC 1 cut(s) 2270
BstAUI TGTACA 2 cut(s) 717, 2245
BstC8I GCNNGC 3 cut(s) 781, 941, 1024
BstDEI CTNAG 6 cut(s) 282, 329, 877, 1101, 1735, 1884
BstDSI CCRYGG 1 cut(s) 214
BstENI CCTNNNNNAGG 1 cut(s) 788
BstF5I GGATG 3 cut(s) 168, 1543, 1995
BstFNI CGCG 1 cut(s) 2182
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 2 cut(s) 104, 1075
BstKTI GATC 6 cut(s) 351, 1258, 1715, 2148, 2179, 2257
BstMBI GATC 6 cut(s) 348, 1255, 1712, 2145, 2176, 2254
BstMWI GCNNNNNNNGC 3 cut(s) 195, 1427, 2270
BstNI CCWGG 5 cut(s) 230, 785, 953, 1185, 1703
BstNSI RCATGY 3 cut(s) 783, 1026, 1906
BstSCI CCNGG 6 cut(s) 228, 737, 783, 951, 1183, 1701
BstSFI CTRYAG 2 cut(s) 1431, 2026
BstUI CGCG 1 cut(s) 2182
BstV1I GCAGC 2 cut(s) 881, 1244
BstV2I GAAGAC 1 cut(s) 1100
BstX2I RGATCY 2 cut(s) 1712, 2176
BstXI CCANNNNNNTGG 1 cut(s) 221
BstYI RGATCY 2 cut(s) 1712, 2176
Bsu36I CCTNAGG 1 cut(s) 1884
BsuI GTATCC 2 cut(s) 373, 1115
BsuRI GGCC 2 cut(s) 513, 538
BtgI CCRYGG 1 cut(s) 214
BtsCI GGATG 3 cut(s) 168, 1543, 1995
BtsI GCAGTG 1 cut(s) 1782
BtsIMutI CAGTG 2 cut(s) 1782, 1834
BveI ACCTGC 1 cut(s) 2278
Cac8I GCNNGC 3 cut(s) 781, 941, 1024
CciI TCATGA 2 cut(s) 1384, 2191
CfoI GCGC 2 cut(s) 104, 1075
Cfr13I GGNCC 4 cut(s) 512, 537, 671, 885
CseI GACGC 1 cut(s) 204
CsiI ACCWGGT 1 cut(s) 228
Csp6I GTAC 9 cut(s) 444, 718, 843, 1699, 1765, 1829, 2104, 2126, 2246
CviQI GTAC 9 cut(s) 444, 718, 843, 1699, 1765, 1829, 2104, 2126, 2246
DdeI CTNAG 6 cut(s) 282, 329, 877, 1101, 1735, 1884
DinI GGCGCC 1 cut(s) 103
DpnI GATC 6 cut(s) 350, 1257, 1714, 2147, 2178, 2256
DpnII GATC 6 cut(s) 348, 1255, 1712, 2145, 2176, 2254
DraI TTTAAA 1 cut(s) 1441
Eam1104I CTCTTC 2 cut(s) 36, 1556
EarI CTCTTC 2 cut(s) 36, 1556
Ecl136II GAGCTC 1 cut(s) 958
Eco130I CCWWGG 4 cut(s) 214, 420, 439, 1716
Eco24I GRGCYC 1 cut(s) 960
Eco47I GGWCC 2 cut(s) 671, 885
Eco53kI GAGCTC 1 cut(s) 958
Eco57I CTGAAG 2 cut(s) 284, 837
Eco81I CCTNAGG 1 cut(s) 1884
EcoICRI GAGCTC 1 cut(s) 958
EcoNI CCTNNNNNAGG 1 cut(s) 788
EcoRI GAATTC 1 cut(s) 1030
EcoRII CCWGG 5 cut(s) 228, 783, 951, 1183, 1701
EcoT14I CCWWGG 4 cut(s) 214, 420, 439, 1716
EcoT22I ATGCAT 2 cut(s) 655, 781
EcoT38I GRGCYC 1 cut(s) 960
EgeI GGCGCC 1 cut(s) 103
EheI GGCGCC 1 cut(s) 103
ErhI CCWWGG 4 cut(s) 214, 420, 439, 1716
FalI AAGNNNNNCTT 4 cut(s) 932, 964, 1133, 1165
FauNDI CATATG 1 cut(s) 1635
FblI GTMKAC 1 cut(s) 2025
Fnu4HI GCNGC 3 cut(s) 680, 895, 1233
FokI GGATG 3 cut(s) 175, 1550, 2002
FriOI GRGCYC 1 cut(s) 960
Fsp4HI GCNGC 3 cut(s) 680, 895, 1233
FspBI CTAG 9 cut(s) 248, 525, 591, 630, 944, 1040, 1050, 1205, 1950
GlaI GCGC 2 cut(s) 103, 1074
GluI GCNGC 3 cut(s) 680, 895, 1233
GsuI CTGGAG 3 cut(s) 974, 1724, 1965
HaeII RGCGCY 1 cut(s) 105
HaeIII GGCC 2 cut(s) 513, 538
HapII CCGG 1 cut(s) 738
HgaI GACGC 1 cut(s) 204
HhaI GCGC 2 cut(s) 104, 1075
Hin1I GRCGYC 1 cut(s) 102
Hin6I GCGC 2 cut(s) 102, 1073
HinP1I GCGC 2 cut(s) 102, 1073
HincII GTYRAC 1 cut(s) 267
HindII GTYRAC 1 cut(s) 267
HindIII AAGCTT 2 cut(s) 7, 2210
HpaII CCGG 1 cut(s) 738
HphI GGTGA 9 cut(s) 54, 397, 815, 891, 1408, 1441, 1553, 1621, 2005
Hpy166II GTNNAC 5 cut(s) 132, 267, 1399, 2026, 2246
Hpy8I GTNNAC 5 cut(s) 132, 267, 1399, 2026, 2246
HpyAV CCTTC 6 cut(s) 861, 916, 1565, 1928, 2150, 2221
HpyCH4III ACNGT 9 cut(s) 154, 488, 556, 722, 753, 1127, 1519, 1838, 1863
HpyCH4IV ACGT 1 cut(s) 870
HpyF10VI GCNNNNNNNGC 3 cut(s) 195, 1427, 2270
HpyF3I CTNAG 6 cut(s) 282, 329, 877, 1101, 1735, 1884
HpySE526I ACGT 1 cut(s) 870
Hsp92I GRCGYC 1 cut(s) 102
HspAI GCGC 2 cut(s) 102, 1073
KasI GGCGCC 1 cut(s) 101
Kzo9I GATC 6 cut(s) 348, 1255, 1712, 2145, 2176, 2254
LmnI GCTCC 5 cut(s) 955, 963, 1984, 2050, 2290
Lsp1109I GCAGC 2 cut(s) 881, 1244
LweI GCATC 8 cut(s) 232, 662, 714, 766, 1043, 1155, 1579, 1999
MabI ACCWGGT 1 cut(s) 228
MaeI CTAG 9 cut(s) 248, 525, 591, 630, 944, 1040, 1050, 1205, 1950
MaeII ACGT 1 cut(s) 870
MaeIII GTNAC 5 cut(s) 632, 1094, 1406, 1471, 2134
MalI GATC 6 cut(s) 350, 1257, 1714, 2147, 2178, 2256
MbiI CCGCTC 1 cut(s) 84
MboI GATC 6 cut(s) 348, 1255, 1712, 2145, 2176, 2254
MboII GAAGA 4 cut(s) 53, 1100, 1573, 2264
MflI RGATCY 2 cut(s) 1712, 2176
MhlI GDGCHC 1 cut(s) 960
MluCI AATT 9 cut(s) 600, 620, 742, 910, 1008, 1030, 1329, 1595, 2004
Mly113I GGCGCC 1 cut(s) 102
MlyI GAGTC 3 cut(s) 910, 1114, 2160
MmeI TCCRAC 2 cut(s) 398, 2028
Mph1103I ATGCAT 2 cut(s) 655, 781
MroXI GAANNNNTTC 2 cut(s) 76, 1575
MslI CAYNNNNRTG 2 cut(s) 219, 1839
MspCI CTTAAG 1 cut(s) 709
MspI CCGG 1 cut(s) 738
MspR9I CCNGG 6 cut(s) 230, 739, 785, 953, 1185, 1703
Mva1269I GAATGC 1 cut(s) 1575
MvaI CCWGG 5 cut(s) 230, 785, 953, 1185, 1703
MvnI CGCG 1 cut(s) 2182
MwoI GCNNNNNNNGC 3 cut(s) 195, 1427, 2270
NarI GGCGCC 1 cut(s) 102
NciI CCSGG 1 cut(s) 739
NcoI CCATGG 1 cut(s) 214
NdeI CATATG 1 cut(s) 1635
NdeII GATC 6 cut(s) 348, 1255, 1712, 2145, 2176, 2254
NlaIV GGNNCC 7 cut(s) 73, 103, 335, 539, 1714, 1963, 1980
NmuCI GTSAC 2 cut(s) 632, 2134
NsiI ATGCAT 2 cut(s) 655, 781
NspI RCATGY 3 cut(s) 783, 1026, 1906
PaeI GCATGC 2 cut(s) 783, 1026
PagI TCATGA 2 cut(s) 1384, 2191
PctI GAATGC 1 cut(s) 1575
PdmI GAANNNNTTC 2 cut(s) 76, 1575
PfeI GAWTC 7 cut(s) 368, 459, 731, 1046, 1062, 1162, 1996
PfoI TCCNGGA 1 cut(s) 951
PkrI GCNGC 3 cut(s) 681, 896, 1234
PleI GAGTC 3 cut(s) 910, 1113, 2159
PluTI GGCGCC 1 cut(s) 105
PpsI GAGTC 3 cut(s) 910, 1113, 2159
PshBI ATTAAT 1 cut(s) 1926
Psp124BI GAGCTC 1 cut(s) 960
Psp1406I AACGTT 1 cut(s) 870
Psp6I CCWGG 5 cut(s) 228, 783, 951, 1183, 1701
PspGI CCWGG 5 cut(s) 228, 783, 951, 1183, 1701
PspN4I GGNNCC 7 cut(s) 73, 103, 335, 539, 1714, 1963, 1980
PspPI GGNCC 4 cut(s) 512, 537, 671, 885
PsrI GAACNNNNNNTAC 2 cut(s) 1391, 1423
PsuI RGATCY 2 cut(s) 1712, 2176
RsaI GTAC 9 cut(s) 445, 719, 844, 1700, 1766, 1830, 2105, 2127, 2247
RsaNI GTAC 9 cut(s) 444, 718, 843, 1699, 1765, 1829, 2104, 2126, 2246
RseI CAYNNNNRTG 2 cut(s) 219, 1839
SacI GAGCTC 1 cut(s) 960
SatI GCNGC 3 cut(s) 680, 895, 1233
Sau3AI GATC 6 cut(s) 348, 1255, 1712, 2145, 2176, 2254
Sau96I GGNCC 4 cut(s) 512, 537, 671, 885
SchI GAGTC 3 cut(s) 910, 1114, 2160
ScrFI CCNGG 6 cut(s) 230, 739, 785, 953, 1185, 1703
SduI GDGCHC 1 cut(s) 960
SexAI ACCWGGT 1 cut(s) 228
SfaNI GCATC 8 cut(s) 232, 662, 714, 766, 1043, 1155, 1579, 1999
SfcI CTRYAG 2 cut(s) 1431, 2026
SfoI GGCGCC 1 cut(s) 103
SinI GGWCC 2 cut(s) 671, 885
SmiMI CAYNNNNRTG 2 cut(s) 219, 1839
SmlI CTYRAG 3 cut(s) 709, 927, 2300
SmoI CTYRAG 3 cut(s) 709, 927, 2300
SphI GCATGC 2 cut(s) 783, 1026
Sse9I AATT 9 cut(s) 600, 620, 742, 910, 1008, 1030, 1329, 1595, 2004
SsiI CCGC 5 cut(s) 84, 679, 1230, 1762, 2180
SspDI GGCGCC 1 cut(s) 101
SspMI CTAG 9 cut(s) 248, 525, 591, 630, 944, 1040, 1050, 1205, 1950
SstI GAGCTC 1 cut(s) 960
StyD4I CCNGG 6 cut(s) 228, 737, 783, 951, 1183, 1701
StyI CCWWGG 4 cut(s) 214, 420, 439, 1716
TaaI ACNGT 9 cut(s) 154, 488, 556, 722, 753, 1127, 1519, 1838, 1863
TaiI ACGT 1 cut(s) 873
TaqI TCGA 7 cut(s) 80, 172, 200, 477, 1957, 2154, 2257
TasI AATT 9 cut(s) 600, 620, 742, 910, 1008, 1030, 1329, 1595, 2004
TatI WGTACW 4 cut(s) 717, 842, 2103, 2245
TauI GCSGC 1 cut(s) 682
TfiI GAWTC 7 cut(s) 368, 459, 731, 1046, 1062, 1162, 1996
TscAI CASTG 2 cut(s) 1789, 1841
TseFI GTSAC 2 cut(s) 632, 2134
TseI GCWGC 2 cut(s) 894, 1232
Tsp45I GTSAC 2 cut(s) 632, 2134
TspDTI ATGAA 7 cut(s) 744, 1023, 1307, 1652, 1947, 2177, 2240
TspGWI ACGGA 2 cut(s) 392, 1095
TspRI CASTG 2 cut(s) 1789, 1841
Vha464I CTTAAG 1 cut(s) 709
VpaK11BI GGWCC 2 cut(s) 671, 885
VspI ATTAAT 1 cut(s) 1926
XagI CCTNNNNNAGG 1 cut(s) 788
XapI RAATTY 3 cut(s) 1008, 1030, 1595
XbaI TCTAGA 3 cut(s) 590, 1049, 1949
XceI RCATGY 3 cut(s) 783, 1026, 1906
XcmI CCANNNNNNNNNTGG 2 cut(s) 1972, 2281
XmiI GTMKAC 1 cut(s) 2025
XmnI GAANNNNTTC 2 cut(s) 76, 1575
XspI CTAG 9 cut(s) 248, 525, 591, 630, 944, 1040, 1050, 1205, 1950
Zsp2I ATGCAT 2 cut(s) 655, 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.