Rmu_sc0013106.1_g000001

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013106.1
OG0000166
Physical Location & Seq
Forward (+)
1 .. 262
262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013106.1_g000001.1.cds

Sequence Viewer

Length: 262 bp
aatggatgtggaaatcagtgatggtgagcagagaagactaattatgtgggtgagggagaaactaaatggaactgaaattgcatccagaatcggagagatcatagatccctcgtttgacgaaggcaactatgatgtggaaaagatggaaattttgttaacagtagctttacattgtgtggaagaagacaaagattcaagaccaaccatgagtcaagtcgttgagatgcttcaacaccacggcaaagaatctcagtggcaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

86

Amino Acids

10.0

Weight (kDa)

4.55

Isoelectric Point (pI)

60.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 99
AcsI RAATTY 1 cut(s) 148
AgsI TTSAA 2 cut(s) 196, 231
AluBI AGCT 1 cut(s) 165
AluI AGCT 1 cut(s) 165
AlwI GGATC 1 cut(s) 99
ApoI RAATTY 1 cut(s) 148
AsuHPI GGTGA 2 cut(s) 36, 62
BbsI GAAGAC 2 cut(s) 41, 190
BccI CCATC 2 cut(s) 15, 137
BceAI ACGGC 1 cut(s) 254
BmsI GCATC 2 cut(s) 90, 214
BpiI GAAGAC 2 cut(s) 41, 190
BsaJI CCNNGG 1 cut(s) 236
BseDI CCNNGG 1 cut(s) 236
BseGI GGATG 2 cut(s) 11, 81
Bsp143I GATC 2 cut(s) 97, 104
BspPI GGATC 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 236
BssMI GATC 2 cut(s) 97, 104
Bst4CI ACNGT 1 cut(s) 161
BstDEI CTNAG 1 cut(s) 250
BstDSI CCRYGG 1 cut(s) 236
BstF5I GGATG 2 cut(s) 11, 81
BstKTI GATC 2 cut(s) 100, 107
BstMBI GATC 2 cut(s) 97, 104
BstV2I GAAGAC 2 cut(s) 41, 190
BstX2I RGATCY 1 cut(s) 104
BstYI RGATCY 1 cut(s) 104
BtgI CCRYGG 1 cut(s) 236
BtsCI GGATG 2 cut(s) 11, 81
BtsIMutI CAGTG 2 cut(s) 23, 258
CviAII CATG 1 cut(s) 206
CviJI RGCY 1 cut(s) 165
CviKI_1 RGCY 1 cut(s) 165
DdeI CTNAG 1 cut(s) 250
DpnI GATC 2 cut(s) 99, 106
DpnII GATC 2 cut(s) 97, 104
FaeI CATG 1 cut(s) 209
FaiI YATR 4 cut(s) 45, 102, 130, 207
FatI CATG 1 cut(s) 205
FokI GGATG 2 cut(s) 18, 68
Hin1II CATG 1 cut(s) 209
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 4 cut(s) 88, 192, 209, 246
HpaI GTTAAC 1 cut(s) 157
HphI GGTGA 2 cut(s) 36, 62
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 1 cut(s) 93
Hpy188III TCNNGA 2 cut(s) 85, 196
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 114
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4V TGCA 1 cut(s) 81
HpyF3I CTNAG 1 cut(s) 250
Hsp92II CATG 1 cut(s) 209
KspAI GTTAAC 1 cut(s) 157
Kzo9I GATC 2 cut(s) 97, 104
LpnPI CCDG 1 cut(s) 98
LweI GCATC 2 cut(s) 90, 214
MalI GATC 2 cut(s) 99, 106
MboI GATC 2 cut(s) 97, 104
MboII GAAGA 3 cut(s) 46, 192, 195
MflI RGATCY 1 cut(s) 104
MluCI AATT 3 cut(s) 40, 76, 148
MlyI GAGTC 1 cut(s) 218
MnlI CCTC 2 cut(s) 46, 119
MseI TTAA 1 cut(s) 156
NdeII GATC 2 cut(s) 97, 104
NlaIII CATG 1 cut(s) 209
PfeI GAWTC 3 cut(s) 88, 192, 246
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
PsuI RGATCY 1 cut(s) 104
SaqAI TTAA 1 cut(s) 156
Sau3AI GATC 2 cut(s) 97, 104
SchI GAGTC 1 cut(s) 218
SetI ASST 1 cut(s) 167
SfaNI GCATC 2 cut(s) 90, 214
SgeI CNNG 6 cut(s) 97, 122, 208, 218, 225, 249
Sse9I AATT 3 cut(s) 40, 76, 148
TaaI ACNGT 1 cut(s) 161
TasI AATT 3 cut(s) 40, 76, 148
TfiI GAWTC 3 cut(s) 88, 192, 246
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 2 cut(s) 23, 258
TspRI CASTG 2 cut(s) 23, 258
XapI RAATTY 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.