Rroxscaffold_3G00260650

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000166
Physical Location & Seq
Reverse (-)
55028129 .. 55031129
3001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00260650.1

Sequence Viewer

Length: 882 bp
ATGTATCTCTCTTCCGAGCTCAAGAAGGCAACTCAAAACTTTAAGGAAGAGTTGGGAAGAGGGTCTTCTGGGGTTGTGTATAAGGGTGTTCTGGAAGACCAAAGAGTTGTAGCTGTCAAGAAATTGGGAGATATTTATCATGCAGAAGATGTGTTTTGGGCAGAAGTAACCACAATCGGAAAAATCCATCACATGAATCTAGTGAGAACATGGGGTTTCTGTTCAGAAAATAAACATAGGCTCCTGATCACTGAGTACATCGAAAATGGATCGTTGGACAAGCATTTGTTCTCTCCAGGTTTTTTTGCATGGAAAGAAAGGTTTAAAGTTGCAATGGGGATAGCTAAAGGTTTAGCCTATCTTCACCATGAGTGTCTAGAGTGGGTTATACATTGTGATGTGAAGCCTGAAAATGTACTCCTAGACAGTGATTTTGAGCCAAAGATAGCGGATTTTGGGCTTGCAGAGTTATCTCAAAGAGGCGGCCGCGGTTCACAGTTCTCTCAAATGAGAGGAACAAAGGGTTACATGGCTCCGGAGTGGGCTTCTAACCTTCCAATCACTGCAAAAGTTGATGTATACAGTTATGGAGTCGTGATTCTAGAGATGGTGAAGGGCATTCGGCTTTCAAATTGGGTGACGGAAGATGATGAGGAGATAGAAACAGAGATGACAAGGTTTATCAGAGTAGCGAAACATAGAATTCAAAGTGGAGAAGAGTCGTGGATAGAGGATATGTTGGATCCAAGATTGGATGGTGAATACAGCAGGAATCAAGCAGCAAAGATGATTGAGATTGGTATTTCCTGTGTGGAGGAAGATCGGTCTAAAAGACCAACAATGGATGCAATAGTACAAATGTTGCTAGAATGTTATAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

293

Amino Acids

33.59

Weight (kDa)

5.57

Isoelectric Point (pI)

37.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 14 - 287 1.3e-52 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 14 - 288 2.6e-41 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 579
AccII CGCG 1 cut(s) 489
AccIII TCCGGA 1 cut(s) 535
AciI CCGC 4 cut(s) 449, 483, 487, 489
AclWI GGATC 3 cut(s) 277, 737, 750
AcoI YGGCCR 1 cut(s) 484
AcsI RAATTY 1 cut(s) 702
AfaI GTAC 3 cut(s) 257, 417, 855
AgsI TTSAA 2 cut(s) 630, 707
AjnI CCWGG 1 cut(s) 295
AluBI AGCT 3 cut(s) 19, 113, 344
AluI AGCT 3 cut(s) 19, 113, 344
Alw21I GWGCWC 1 cut(s) 21
AlwI GGATC 3 cut(s) 277, 737, 750
Aor13HI TCCGGA 1 cut(s) 535
AoxI GGCC 1 cut(s) 484
ApeKI GCWGC 1 cut(s) 779
ApoI RAATTY 1 cut(s) 702
ArsI GACNNNNNNTTYG 2 cut(s) 416, 448
AsuHPI GGTGA 4 cut(s) 356, 622, 649, 770
BamHI GGATCC 1 cut(s) 742
BanII GRGCYC 1 cut(s) 21
BbsI GAAGAC 2 cut(s) 57, 102
Bbv12I GWGCWC 1 cut(s) 21
BbvI GCAGC 1 cut(s) 791
BccI CCATC 3 cut(s) 195, 601, 749
BciT130I CCWGG 1 cut(s) 297
BclI TGATCA 1 cut(s) 246
BfaI CTAG 5 cut(s) 200, 377, 422, 602, 866
BisI GCNGC 3 cut(s) 484, 487, 780
BlsI GCNGC 3 cut(s) 485, 488, 781
Bme1390I CCNGG 1 cut(s) 297
BmiI GGNNCC 3 cut(s) 242, 534, 744
BmrFI CCNGG 1 cut(s) 297
BmsI GCATC 1 cut(s) 835
BpiI GAAGAC 2 cut(s) 57, 102
BpmI CTGGAG 1 cut(s) 279
BpuEI CTTGAG 1 cut(s) 5
BsaBI GATNNNNATC 1 cut(s) 135
BsaJI CCNNGG 1 cut(s) 487
BsaWI WCCGGW 1 cut(s) 535
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
Bse3DI GCAATG 1 cut(s) 339
Bse8I GATNNNNATC 1 cut(s) 135
BseAI TCCGGA 1 cut(s) 535
BseBI CCWGG 1 cut(s) 297
BseDI CCNNGG 1 cut(s) 487
BseGI GGATG 2 cut(s) 760, 850
BseJI GATNNNNATC 1 cut(s) 135
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 1 cut(s) 243
BseRI GAGGAG 1 cut(s) 668
BseX3I CGGCCG 1 cut(s) 484
BseXI GCAGC 1 cut(s) 791
Bsh1236I CGCG 1 cut(s) 489
Bsh1285I CGRYCG 1 cut(s) 487
BshFI GGCC 1 cut(s) 486
BsiEI CGRYCG 1 cut(s) 487
BsiHKAI GWGCWC 1 cut(s) 21
BsiSI CCGG 1 cut(s) 536
BsmI GAATGC 1 cut(s) 618
BsnI GGCC 1 cut(s) 486
Bsp1286I GDGCHC 1 cut(s) 21
Bsp13I TCCGGA 1 cut(s) 535
Bsp143I GATC 4 cut(s) 246, 269, 742, 820
BspACI CCGC 4 cut(s) 449, 483, 487, 489
BspANI GGCC 1 cut(s) 486
BspCNI CTCAG 1 cut(s) 244
BspEI TCCGGA 1 cut(s) 535
BspFNI CGCG 1 cut(s) 489
BspLI GGNNCC 3 cut(s) 242, 534, 744
BspPI GGATC 3 cut(s) 277, 737, 750
BsrDI GCAATG 1 cut(s) 339
BssECI CCNNGG 1 cut(s) 487
BssMI GATC 4 cut(s) 246, 269, 742, 820
BssNAI GTATAC 1 cut(s) 580
Bst1107I GTATAC 1 cut(s) 580
Bst2UI CCWGG 1 cut(s) 297
Bst4CI ACNGT 3 cut(s) 428, 498, 584
Bst6I CTCTTC 4 cut(s) 16, 42, 52, 711
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 1 cut(s) 252
BstDSI CCRYGG 1 cut(s) 487
BstF5I GGATG 2 cut(s) 760, 850
BstFNI CGCG 1 cut(s) 489
BstKTI GATC 4 cut(s) 249, 272, 745, 823
BstMBI GATC 4 cut(s) 246, 269, 742, 820
BstMCI CGRYCG 1 cut(s) 487
BstNI CCWGG 1 cut(s) 297
BstSCI CCNGG 1 cut(s) 295
BstUI CGCG 1 cut(s) 489
BstV1I GCAGC 1 cut(s) 791
BstV2I GAAGAC 2 cut(s) 57, 102
BstX2I RGATCY 1 cut(s) 742
BstYI RGATCY 1 cut(s) 742
BstZ17I GTATAC 1 cut(s) 580
BstZI CGGCCG 1 cut(s) 484
BsuRI GGCC 1 cut(s) 486
BtgI CCRYGG 1 cut(s) 487
BtsCI GGATG 2 cut(s) 760, 850
BtsI GCAGTG 1 cut(s) 561
BtsIMutI CAGTG 3 cut(s) 249, 433, 561
Cac8I GCNNGC 1 cut(s) 462
CciNI GCGGCCGC 1 cut(s) 484
Cfr42I CCGCGG 1 cut(s) 490
Csp6I GTAC 3 cut(s) 256, 416, 854
CviAII CATG 6 cut(s) 140, 193, 210, 309, 368, 529
CviQI GTAC 3 cut(s) 256, 416, 854
DdeI CTNAG 1 cut(s) 252
DpnI GATC 4 cut(s) 248, 271, 744, 822
DpnII GATC 4 cut(s) 246, 269, 742, 820
DraI TTTAAA 1 cut(s) 325
EaeI YGGCCR 1 cut(s) 484
EagI CGGCCG 1 cut(s) 484
Eam1104I CTCTTC 4 cut(s) 16, 42, 52, 711
EarI CTCTTC 4 cut(s) 16, 42, 52, 711
Ecl136II GAGCTC 1 cut(s) 19
EclXI CGGCCG 1 cut(s) 484
Eco24I GRGCYC 1 cut(s) 21
Eco52I CGGCCG 1 cut(s) 484
Eco53kI GAGCTC 1 cut(s) 19
EcoICRI GAGCTC 1 cut(s) 19
EcoRI GAATTC 1 cut(s) 702
EcoRII CCWGG 1 cut(s) 295
EcoT38I GRGCYC 1 cut(s) 21
FaeI CATG 6 cut(s) 143, 196, 213, 312, 371, 532
FalI AAGNNNNNCTT 2 cut(s) 49, 81
FatI CATG 6 cut(s) 139, 192, 209, 308, 367, 528
FbaI TGATCA 1 cut(s) 246
FblI GTMKAC 1 cut(s) 579
Fnu4HI GCNGC 3 cut(s) 484, 487, 780
FokI GGATG 2 cut(s) 767, 857
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 3 cut(s) 484, 487, 780
FspBI CTAG 5 cut(s) 200, 377, 422, 602, 866
GluI GCNGC 3 cut(s) 484, 487, 780
GsuI CTGGAG 1 cut(s) 279
HaeIII GGCC 1 cut(s) 486
HapII CCGG 1 cut(s) 536
Hin1II CATG 6 cut(s) 143, 196, 213, 312, 371, 532
HinfI GANTC 5 cut(s) 196, 591, 598, 719, 772
HpaII CCGG 1 cut(s) 536
HphI GGTGA 4 cut(s) 356, 622, 649, 770
Hpy166II GTNNAC 2 cut(s) 494, 580
Hpy188I TCNGA 4 cut(s) 16, 179, 226, 686
Hpy188III TCNNGA 8 cut(s) 22, 92, 118, 244, 377, 536, 595, 602
Hpy8I GTNNAC 2 cut(s) 494, 580
HpyAV CCTTC 3 cut(s) 19, 563, 607
HpyCH4III ACNGT 3 cut(s) 428, 498, 584
HpyCH4V TGCA 6 cut(s) 143, 308, 332, 464, 566, 848
HpyF3I CTNAG 1 cut(s) 252
Hsp92II CATG 6 cut(s) 143, 196, 213, 312, 371, 532
Kpn2I TCCGGA 1 cut(s) 535
Ksp22I TGATCA 1 cut(s) 246
KspI CCGCGG 1 cut(s) 490
Kzo9I GATC 4 cut(s) 246, 269, 742, 820
LmnI GCTCC 2 cut(s) 246, 538
LpnPI CCDG 9 cut(s) 54, 77, 257, 282, 309, 420, 549, 754, 820
Lsp1109I GCAGC 1 cut(s) 791
LweI GCATC 1 cut(s) 835
MaeI CTAG 5 cut(s) 200, 377, 422, 602, 866
MaeIII GTNAC 3 cut(s) 166, 524, 637
MalI GATC 4 cut(s) 248, 271, 744, 822
MboI GATC 4 cut(s) 246, 269, 742, 820
MflI RGATCY 1 cut(s) 742
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 3 cut(s) 122, 631, 702
MlyI GAGTC 2 cut(s) 600, 728
MmeI TCCRAC 2 cut(s) 255, 720
MnlI CCTC 6 cut(s) 53, 473, 506, 646, 724, 808
MroI TCCGGA 1 cut(s) 535
MseI TTAA 2 cut(s) 42, 324
MslI CAYNNNNRTG 1 cut(s) 396
MspA1I CMGCKG 1 cut(s) 489
MspI CCGG 1 cut(s) 536
MspR9I CCNGG 1 cut(s) 297
Mva1269I GAATGC 1 cut(s) 618
MvaI CCWGG 1 cut(s) 297
MvnI CGCG 1 cut(s) 489
NdeII GATC 4 cut(s) 246, 269, 742, 820
NlaIII CATG 6 cut(s) 143, 196, 213, 312, 371, 532
NlaIV GGNNCC 3 cut(s) 242, 534, 744
NmuCI GTSAC 1 cut(s) 637
NotI GCGGCCGC 1 cut(s) 484
PctI GAATGC 1 cut(s) 618
PfeI GAWTC 3 cut(s) 196, 598, 772
PkrI GCNGC 3 cut(s) 485, 488, 781
PleI GAGTC 2 cut(s) 599, 727
PpsI GAGTC 2 cut(s) 599, 727
Psp124BI GAGCTC 1 cut(s) 21
Psp6I CCWGG 1 cut(s) 295
PspGI CCWGG 1 cut(s) 295
PspN4I GGNNCC 3 cut(s) 242, 534, 744
PsuI RGATCY 1 cut(s) 742
RsaI GTAC 3 cut(s) 257, 417, 855
RsaNI GTAC 3 cut(s) 256, 416, 854
RseI CAYNNNNRTG 1 cut(s) 396
SacI GAGCTC 1 cut(s) 21
SacII CCGCGG 1 cut(s) 490
SaqAI TTAA 2 cut(s) 42, 324
SatI GCNGC 3 cut(s) 484, 487, 780
Sau3AI GATC 4 cut(s) 246, 269, 742, 820
SchI GAGTC 2 cut(s) 600, 728
ScrFI CCNGG 1 cut(s) 297
SduI GDGCHC 1 cut(s) 21
SetI ASST 9 cut(s) 21, 115, 301, 323, 346, 352, 555, 680, 881
SfaNI GCATC 1 cut(s) 835
Sfr303I CCGCGG 1 cut(s) 490
SgrBI CCGCGG 1 cut(s) 490
SmiMI CAYNNNNRTG 1 cut(s) 396
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
Sse9I AATT 3 cut(s) 122, 631, 702
SsiI CCGC 4 cut(s) 449, 483, 487, 489
SspMI CTAG 5 cut(s) 200, 377, 422, 602, 866
SstI GAGCTC 1 cut(s) 21
StyD4I CCNGG 1 cut(s) 295
TaaI ACNGT 3 cut(s) 428, 498, 584
TaqI TCGA 1 cut(s) 261
TaqII GACCGA 1 cut(s) 813
TasI AATT 3 cut(s) 122, 631, 702
TatI WGTACW 3 cut(s) 255, 415, 853
TauI GCSGC 2 cut(s) 486, 489
TfiI GAWTC 3 cut(s) 196, 598, 772
Tru1I TTAA 2 cut(s) 42, 324
Tru9I TTAA 2 cut(s) 42, 324
TscAI CASTG 3 cut(s) 256, 433, 568
TseFI GTSAC 1 cut(s) 637
TseI GCWGC 1 cut(s) 779
Tsp45I GTSAC 1 cut(s) 637
TspDTI ATGAA 1 cut(s) 209
TspGWI ACGGA 1 cut(s) 656
TspRI CASTG 3 cut(s) 256, 433, 568
XapI RAATTY 1 cut(s) 702
XbaI TCTAGA 2 cut(s) 376, 601
XmiI GTMKAC 1 cut(s) 579
XspI CTAG 5 cut(s) 200, 377, 422, 602, 866
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.