RLG00000024664

Receptor protein kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
38009671 .. 38010303
633 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024664

Sequence Viewer

Length: 633 bp
ATGTCGAATGTTAAGAGCATCATCCATGTGAAGATTCCAAAAGGTCTTCTGAACCCTAGTGCAGTCCAAACCAGACTAGAAACACATGATTTGAACTGTTCAGCCGCACAGTTTGTTGTAAGTACTGATCTCGAAACAGAGAAGGGCAATGGAAACCAGTACATGAAATACCTCATTGGATTTTTGAGTTCCTTTGGGCTAATTGAAGCAATCGGCATCAGTTTGACATGGTGGTTTGTGTTCCGAAAGCAAGCTCGTGACGAAATGATGAACATGGGGTACATGGCATTAGCCATAAATGCTGTGGGATTCAAAAGTTTCACCTATGCAGAACTAAAGAAAGCAACCAATGACTTCAAACAAGAGATAGGAAAAGGAGGGTTCGGCACAGTCTATAAAGGGGTTTTGGATGGTGACAGTGTTGTAGCTGTGAAGAGACTAGAAGGCATTGTACAAGGAGATGCAGTGTTTTGGGCAGAGGTTAGTGTCATAGGGAATATCAACCACAGGAACTTGGTTAAGCTTTGGGGTTTCTGTGCTGAGAATGAACATAAGCTGTTGGTATATGAGTATCTGGAGAATGGATCCTTGGATAAACTCTTGTTTTCTGATGTTGAATTAGGATTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

211

Amino Acids

23.38

Weight (kDa)

5.85

Isoelectric Point (pI)

17.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 119 - 201 2.1e-15 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 120 - 201 6.6e-14 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 105
AclWI GGATC 2 cut(s) 579, 592
AfaI GTAC 4 cut(s) 124, 161, 281, 453
AgsI TTSAA 5 cut(s) 94, 206, 313, 358, 617
AjuI GAANNNNNNNTTGG 2 cut(s) 572, 604
AluBI AGCT 4 cut(s) 254, 428, 523, 556
AluI AGCT 4 cut(s) 254, 428, 523, 556
Alw26I GTCTC 1 cut(s) 430
AlwI GGATC 2 cut(s) 579, 592
AsuHPI GGTGA 2 cut(s) 313, 425
BamHI GGATCC 1 cut(s) 584
BarI GAAGNNNNNNTAC 2 cut(s) 435, 467
BauI CACGAG 1 cut(s) 255
BbsI GAAGAC 1 cut(s) 38
BccI CCATC 1 cut(s) 404
BcoDI GTCTC 1 cut(s) 430
BfaI CTAG 3 cut(s) 57, 77, 440
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
BmcAI AGTACT 1 cut(s) 124
BmiI GGNNCC 1 cut(s) 586
BmsI GCATC 3 cut(s) 27, 225, 451
BpiI GAAGAC 1 cut(s) 38
BpmI CTGGAG 1 cut(s) 596
BsaJI CCNNGG 1 cut(s) 588
BsaXI ACNNNNNCTCC 2 cut(s) 450, 480
Bse1I ACTGG 1 cut(s) 157
Bse3DI GCAATG 1 cut(s) 154
BseDI CCNNGG 1 cut(s) 588
BseGI GGATG 2 cut(s) 21, 415
BseMI GCAATG 1 cut(s) 154
BseMII CTCAG 1 cut(s) 531
BseNI ACTGG 1 cut(s) 157
BsgI GTGCAG 1 cut(s) 81
BsmAI GTCTC 1 cut(s) 430
Bsp1407I TGTACA 1 cut(s) 451
Bsp143I GATC 2 cut(s) 127, 584
BspACI CCGC 1 cut(s) 105
BspCNI CTCAG 1 cut(s) 532
BspLI GGNNCC 1 cut(s) 586
BspPI GGATC 2 cut(s) 579, 592
BsrDI GCAATG 1 cut(s) 154
BsrGI TGTACA 1 cut(s) 451
BsrI ACTGG 1 cut(s) 157
BssECI CCNNGG 1 cut(s) 588
BssMI GATC 2 cut(s) 127, 584
BssSI CACGAG 1 cut(s) 255
BssT1I CCWWGG 1 cut(s) 588
Bst2BI CACGAG 1 cut(s) 255
Bst4CI ACNGT 4 cut(s) 98, 111, 391, 419
Bst6I CTCTTC 1 cut(s) 428
BstAUI TGTACA 1 cut(s) 451
BstC8I GCNNGC 1 cut(s) 252
BstDEI CTNAG 1 cut(s) 540
BstF5I GGATG 2 cut(s) 21, 415
BstKTI GATC 2 cut(s) 130, 587
BstMAI GTCTC 1 cut(s) 430
BstMBI GATC 2 cut(s) 127, 584
BstMWI GCNNNNNNNGC 1 cut(s) 299
BstV2I GAAGAC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 584
BstYI RGATCY 1 cut(s) 584
BtsCI GGATG 2 cut(s) 21, 415
BtsI GCAGTG 1 cut(s) 471
BtsIMutI CAGTG 2 cut(s) 424, 471
Cac8I GCNNGC 1 cut(s) 252
Csp6I GTAC 4 cut(s) 123, 160, 280, 452
CviAII CATG 6 cut(s) 26, 86, 163, 228, 274, 283
CviJI RGCY 7 cut(s) 104, 199, 254, 293, 428, 523, 556
CviKI_1 RGCY 7 cut(s) 104, 199, 254, 293, 428, 523, 556
CviQI GTAC 4 cut(s) 123, 160, 280, 452
DdeI CTNAG 1 cut(s) 540
DpnI GATC 2 cut(s) 129, 586
DpnII GATC 2 cut(s) 127, 584
Eam1104I CTCTTC 1 cut(s) 428
EarI CTCTTC 1 cut(s) 428
Eco130I CCWWGG 1 cut(s) 588
EcoT14I CCWWGG 1 cut(s) 588
ErhI CCWWGG 1 cut(s) 588
FaeI CATG 6 cut(s) 29, 89, 166, 231, 277, 286
FatI CATG 6 cut(s) 25, 85, 162, 227, 273, 282
Fnu4HI GCNGC 1 cut(s) 105
FokI GGATG 2 cut(s) 8, 422
Fsp4HI GCNGC 1 cut(s) 105
FspBI CTAG 3 cut(s) 57, 77, 440
GluI GCNGC 1 cut(s) 105
GsuI CTGGAG 1 cut(s) 596
Hin1II CATG 6 cut(s) 29, 89, 166, 231, 277, 286
HindIII AAGCTT 1 cut(s) 521
HinfI GANTC 2 cut(s) 34, 309
HphI GGTGA 2 cut(s) 313, 425
Hpy188I TCNGA 3 cut(s) 51, 245, 610
Hpy188III TCNNGA 3 cut(s) 131, 257, 575
HpyAV CCTTC 2 cut(s) 136, 437
HpyCH4III ACNGT 4 cut(s) 98, 111, 391, 419
HpyCH4V TGCA 3 cut(s) 62, 329, 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 299
HpyF3I CTNAG 1 cut(s) 540
Hsp92II CATG 6 cut(s) 29, 89, 166, 231, 277, 286
Kzo9I GATC 2 cut(s) 127, 584
LpnPI CCDG 4 cut(s) 85, 170, 493, 560
LweI GCATC 3 cut(s) 27, 225, 451
MaeI CTAG 3 cut(s) 57, 77, 440
MaeIII GTNAC 2 cut(s) 257, 413
MalI GATC 2 cut(s) 129, 586
MboI GATC 2 cut(s) 127, 584
MboII GAAGA 3 cut(s) 38, 43, 445
MflI RGATCY 1 cut(s) 584
MluCI AATT 2 cut(s) 201, 617
MnlI CCTC 3 cut(s) 182, 371, 472
MseI TTAA 2 cut(s) 12, 519
MslI CAYNNNNRTG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 299
NdeII GATC 2 cut(s) 127, 584
NlaIII CATG 6 cut(s) 29, 89, 166, 231, 277, 286
NlaIV GGNNCC 1 cut(s) 586
NmuCI GTSAC 2 cut(s) 257, 413
PfeI GAWTC 2 cut(s) 34, 309
PkrI GCNGC 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 586
PsrI GAACNNNNNNTAC 2 cut(s) 263, 295
PsuI RGATCY 1 cut(s) 584
RsaI GTAC 4 cut(s) 124, 161, 281, 453
RsaNI GTAC 4 cut(s) 123, 160, 280, 452
RseI CAYNNNNRTG 1 cut(s) 26
SaqAI TTAA 2 cut(s) 12, 519
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 2 cut(s) 127, 584
ScaI AGTACT 1 cut(s) 124
SetI ASST 8 cut(s) 46, 174, 256, 326, 430, 483, 525, 558
SfaNI GCATC 3 cut(s) 27, 225, 451
SmiMI CAYNNNNRTG 1 cut(s) 26
Sse9I AATT 2 cut(s) 201, 617
SsiI CCGC 1 cut(s) 105
SspMI CTAG 3 cut(s) 57, 77, 440
StyI CCWWGG 1 cut(s) 588
TaaI ACNGT 4 cut(s) 98, 111, 391, 419
TaqI TCGA 2 cut(s) 5, 132
TasI AATT 2 cut(s) 201, 617
TatI WGTACW 3 cut(s) 122, 159, 451
TauI GCSGC 1 cut(s) 107
TfiI GAWTC 2 cut(s) 34, 309
Tru1I TTAA 2 cut(s) 12, 519
Tru9I TTAA 2 cut(s) 12, 519
TscAI CASTG 2 cut(s) 424, 471
TseFI GTSAC 2 cut(s) 257, 413
Tsp45I GTSAC 2 cut(s) 257, 413
TspDTI ATGAA 3 cut(s) 179, 284, 561
TspRI CASTG 2 cut(s) 424, 471
XcmI CCANNNNNNNNNTGG 1 cut(s) 301
XspI CTAG 3 cut(s) 57, 77, 440
ZrmI AGTACT 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.