RchiOBHm_Chr6g0308641

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000166
Physical Location & Seq
Forward (+)
66669167 .. 66669977
811 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27753

Sequence Viewer

Length: 732 bp
ATGGAATTTGTGGAGCTAACAGCCTCTGCAGCTACGATCCCAGTTCTAGGAGGAAATGCTCTTGCCTTCCAGGATATCAGATGGAAAATCATACTGATTGGTCTTTGGTCTTTGGTTTGGGGTTTGTTGAGCAGTACATTCTCAAAATCAAATGAAGATATTCACGGCTACCTTCTTACTACAACTGGGTTCAAAAGATTTAGCTACGCTGAGCTCAAGACTGCAACACGGGGTTTTAGTGATGAAATTGGGAGAGGAGCAGGAGGAGTTGTTTACAAAGGCGTATTGGCTGATCAGCGAGTGGCAGCGATTAAGCTGCTCAGTGAAGGGCAAGTAGAAGCAGAATTTCTAGCACAAGCTAGTACTATTGGGAAGGTGAATCATATGAACTTGATAGAGATGTGGGGATATTGCTCAGAGGGAAAGCACAGGCTTCTTGTTTATGAGTACATGGAGCATGGTTCCTTGGCACAAAATTTAGCTTCTAATGTGCTTGATTGGGAGAAGAGGTTTGACATTGCTGTCGGCACTGCAAAGGGTCTAGCTTATTTGCACGAAGAGTGCTTGGAGTGGGTTCTACATTGTGATGTAAAGCCTCAAAACATACTGTTGGACTCCAATTTTCAACCAAAGGTTGCAGATTTCGAGCTCTCCAAGATTCTTAACAGAGATAAGCTTAGGAATTCAACCTTTTCTGATGTAGGACGAGAATGGACCCAGTTTAGTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

243

Amino Acids

27.25

Weight (kDa)

5.72

Isoelectric Point (pI)

24.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 80 - 238 1.3e-26 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 81 - 227 8.9e-29 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 521
AclWI GGATC 1 cut(s) 31
AcsI RAATTY 4 cut(s) 5, 344, 475, 682
AfaI GTAC 3 cut(s) 136, 364, 449
AfiI CCNNNNNNNGG 1 cut(s) 47
AgsI TTSAA 3 cut(s) 193, 626, 687
AjnI CCWGG 1 cut(s) 69
Alw21I GWGCWC 2 cut(s) 216, 651
AlwI GGATC 1 cut(s) 31
AlwNI CAGNNNCTG 1 cut(s) 26
ApeKI GCWGC 3 cut(s) 29, 305, 316
ApoI RAATTY 4 cut(s) 5, 344, 475, 682
Asp700I GAANNNNTTC 1 cut(s) 159
AspS9I GGNCC 1 cut(s) 714
AsuHPI GGTGA 1 cut(s) 388
AvaII GGWCC 1 cut(s) 714
BanII GRGCYC 2 cut(s) 216, 651
Bbv12I GWGCWC 2 cut(s) 216, 651
BbvI GCAGC 3 cut(s) 41, 303, 317
BccI CCATC 1 cut(s) 75
BceAI ACGGC 1 cut(s) 181
BcgI CGANNNNNNTGC 2 cut(s) 298, 332
BciT130I CCWGG 1 cut(s) 71
BclI TGATCA 1 cut(s) 292
BfaI CTAG 5 cut(s) 47, 350, 360, 542, 730
BfmI CTRYAG 1 cut(s) 27
BisI GCNGC 3 cut(s) 30, 306, 317
BlpI GCTNAGC 1 cut(s) 210
BlsI GCNGC 3 cut(s) 31, 307, 318
BmcAI AGTACT 1 cut(s) 364
Bme1390I CCNGG 1 cut(s) 71
Bme18I GGWCC 1 cut(s) 714
BmgT120I GGNCC 1 cut(s) 714
BmiI GGNNCC 2 cut(s) 463, 716
BmrFI CCNGG 1 cut(s) 71
BmrI ACTGGG 3 cut(s) 35, 195, 712
BmuI ACTGGG 3 cut(s) 35, 195, 712
Bpu10I CCTNAGC 1 cut(s) 677
Bpu1102I GCTNAGC 1 cut(s) 210
BpuEI CTTGAG 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 465
BsaXI ACNNNNNCTCC 4 cut(s) 255, 285, 494, 524
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse1I ACTGG 3 cut(s) 41, 190, 718
Bse3DI GCAATG 1 cut(s) 516
BseBI CCWGG 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 465
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMI GCAATG 1 cut(s) 516
BseMII CTCAG 3 cut(s) 201, 334, 429
BseNI ACTGG 3 cut(s) 41, 190, 718
BseRI GAGGAG 2 cut(s) 270, 279
BseXI GCAGC 3 cut(s) 41, 303, 317
BsiHKAI GWGCWC 2 cut(s) 216, 651
BslI CCNNNNNNNGG 1 cut(s) 47
Bsp1286I GDGCHC 2 cut(s) 216, 651
Bsp143I GATC 2 cut(s) 36, 292
Bsp1720I GCTNAGC 1 cut(s) 210
BspCNI CTCAG 3 cut(s) 202, 333, 428
BspLI GGNNCC 2 cut(s) 463, 716
BspMAI CTGCAG 1 cut(s) 31
BspPI GGATC 1 cut(s) 31
BsrDI GCAATG 1 cut(s) 516
BsrI ACTGG 3 cut(s) 41, 190, 718
BssECI CCNNGG 1 cut(s) 465
BssMI GATC 2 cut(s) 36, 292
BssT1I CCWWGG 1 cut(s) 465
Bst2UI CCWGG 1 cut(s) 71
Bst4CI ACNGT 1 cut(s) 609
Bst6I CTCTTC 2 cut(s) 500, 552
BstDEI CTNAG 4 cut(s) 210, 320, 415, 677
BstKTI GATC 2 cut(s) 39, 295
BstMBI GATC 2 cut(s) 36, 292
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNI CCWGG 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 69
BstSFI CTRYAG 1 cut(s) 27
BstV1I GCAGC 3 cut(s) 41, 303, 317
BtsI GCAGTG 1 cut(s) 528
BtsIMutI CAGTG 2 cut(s) 328, 528
CaiI CAGNNNCTG 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 714
Csp6I GTAC 3 cut(s) 135, 363, 448
CviAII CATG 2 cut(s) 451, 458
CviQI GTAC 3 cut(s) 135, 363, 448
DdeI CTNAG 4 cut(s) 210, 320, 415, 677
DpnI GATC 2 cut(s) 38, 294
DpnII GATC 2 cut(s) 36, 292
DrdI GACNNNNNNGTC 1 cut(s) 521
DseDI GACNNNNNNGTC 1 cut(s) 521
Eam1104I CTCTTC 2 cut(s) 500, 552
EarI CTCTTC 2 cut(s) 500, 552
Ecl136II GAGCTC 2 cut(s) 214, 649
Eco130I CCWWGG 1 cut(s) 465
Eco24I GRGCYC 2 cut(s) 216, 651
Eco32I GATATC 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 714
Eco53kI GAGCTC 2 cut(s) 214, 649
EcoICRI GAGCTC 2 cut(s) 214, 649
EcoRI GAATTC 1 cut(s) 682
EcoRII CCWGG 1 cut(s) 69
EcoRV GATATC 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 465
EcoT38I GRGCYC 2 cut(s) 216, 651
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 2 cut(s) 454, 461
FaiI YATR 7 cut(s) 92, 384, 386, 444, 452, 459, 605
FatI CATG 2 cut(s) 450, 457
FauNDI CATATG 1 cut(s) 384
FbaI TGATCA 1 cut(s) 292
Fnu4HI GCNGC 3 cut(s) 30, 306, 317
FriOI GRGCYC 2 cut(s) 216, 651
Fsp4HI GCNGC 3 cut(s) 30, 306, 317
FspBI CTAG 5 cut(s) 47, 350, 360, 542, 730
GluI GCNGC 3 cut(s) 30, 306, 317
Hin1II CATG 2 cut(s) 454, 461
HindIII AAGCTT 1 cut(s) 674
HinfI GANTC 3 cut(s) 379, 614, 658
HphI GGTGA 1 cut(s) 388
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 3 cut(s) 80, 418, 697
Hpy188III TCNNGA 1 cut(s) 217
Hpy8I GTNNAC 1 cut(s) 274
HpyAV CCTTC 4 cut(s) 76, 182, 320, 367
HpyCH4III ACNGT 1 cut(s) 609
HpyCH4V TGCA 5 cut(s) 29, 224, 533, 553, 638
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 4 cut(s) 210, 320, 415, 677
Hsp92II CATG 2 cut(s) 454, 461
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 2 cut(s) 36, 292
LmnI GCTCC 3 cut(s) 13, 257, 454
LpnPI CCDG 6 cut(s) 54, 56, 83, 171, 246, 415
Lsp1109I GCAGC 3 cut(s) 41, 303, 317
MaeI CTAG 5 cut(s) 47, 350, 360, 542, 730
MaeIII GTNAC 1 cut(s) 725
MalI GATC 2 cut(s) 38, 294
MboI GATC 2 cut(s) 36, 292
MboII GAAGA 3 cut(s) 167, 517, 569
MhlI GDGCHC 2 cut(s) 216, 651
MluCI AATT 6 cut(s) 5, 246, 344, 475, 619, 682
MlyI GAGTC 1 cut(s) 608
MmeI TCCRAC 1 cut(s) 591
MnlI CCTC 7 cut(s) 34, 44, 248, 257, 412, 501, 606
MroXI GAANNNNTTC 1 cut(s) 159
MseI TTAA 2 cut(s) 312, 663
MslI CAYNNNNRTG 1 cut(s) 585
MspR9I CCNGG 1 cut(s) 71
MvaI CCWGG 1 cut(s) 71
MwoI GCNNNNNNNGC 1 cut(s) 29
NdeI CATATG 1 cut(s) 384
NdeII GATC 2 cut(s) 36, 292
NlaIII CATG 2 cut(s) 454, 461
NlaIV GGNNCC 2 cut(s) 463, 716
PdmI GAANNNNTTC 1 cut(s) 159
PfeI GAWTC 2 cut(s) 379, 658
PfoI TCCNGGA 1 cut(s) 69
PkrI GCNGC 3 cut(s) 31, 307, 318
PleI GAGTC 1 cut(s) 608
PpsI GAGTC 1 cut(s) 608
Psp124BI GAGCTC 2 cut(s) 216, 651
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
PspN4I GGNNCC 2 cut(s) 463, 716
PspPI GGNCC 1 cut(s) 714
PstI CTGCAG 1 cut(s) 31
PstNI CAGNNNCTG 1 cut(s) 26
RsaI GTAC 3 cut(s) 136, 364, 449
RsaNI GTAC 3 cut(s) 135, 363, 448
RseI CAYNNNNRTG 1 cut(s) 585
SacI GAGCTC 2 cut(s) 216, 651
SaqAI TTAA 2 cut(s) 312, 663
SatI GCNGC 3 cut(s) 30, 306, 317
Sau3AI GATC 2 cut(s) 36, 292
Sau96I GGNCC 1 cut(s) 714
ScaI AGTACT 1 cut(s) 364
SchI GAGTC 1 cut(s) 608
ScrFI CCNGG 1 cut(s) 71
SduI GDGCHC 2 cut(s) 216, 651
SfcI CTRYAG 1 cut(s) 27
SinI GGWCC 1 cut(s) 714
SmiMI CAYNNNNRTG 1 cut(s) 585
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 6 cut(s) 5, 246, 344, 475, 619, 682
SspMI CTAG 5 cut(s) 47, 350, 360, 542, 730
SstI GAGCTC 2 cut(s) 216, 651
StyD4I CCNGG 1 cut(s) 69
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 1 cut(s) 609
TaqI TCGA 1 cut(s) 645
TasI AATT 6 cut(s) 5, 246, 344, 475, 619, 682
TatI WGTACW 3 cut(s) 134, 362, 447
TfiI GAWTC 2 cut(s) 379, 658
Tru1I TTAA 2 cut(s) 312, 663
Tru9I TTAA 2 cut(s) 312, 663
TscAI CASTG 2 cut(s) 328, 535
TseI GCWGC 3 cut(s) 29, 305, 316
TspDTI ATGAA 3 cut(s) 168, 258, 401
TspRI CASTG 2 cut(s) 328, 535
VpaK11BI GGWCC 1 cut(s) 714
XapI RAATTY 4 cut(s) 5, 344, 475, 682
XmnI GAANNNNTTC 1 cut(s) 159
XspI CTAG 5 cut(s) 47, 350, 360, 542, 730
ZrmI AGTACT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.