Rh7BG150200

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000166
Physical Location & Seq
Forward (+)
11137905 .. 11139610
1706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG150200.1

Sequence Viewer

Length: 1035 bp
ATGGGGTATGATCACCAAGCTATTTCATCCCCAAATTTCCCTTCTTTTCTTATTTTCTGTTTCATCACTGTGTTTTTCTACTCTTCTGCAACTGCAAAAACCCTCAACACATTACAAAGAGGCTCTTCTCTCTCAGTGAAAAATGATGTATCAGACTTCCTGACTTCCCCAGACAACTCCTTCACATGTGGGTTCTATGGTGTAGGCACCAATGCCTACTGGTTCTCCATCTGGTTCACCCACTCCAGGGACAGAACCGTAATTTGGATGGCCAACAGAAACCGACCCGTCAATGGCTTGGGCTCCAGAACCTCACTGACCCGAGATGGCTCAATGGTCTTGACAGATGTGGATGGCATGCAAGTCTGGTCTCCCAACCTCAACTCTAGTTCTGCCAACCTTGCTGAAAGGGCTGAGCTATTGAATTCTGGCAACCTTGTTTTGAGGGGCCCACAAGGTGAAATTCTATGGCAAAGCTTTGATTTTCCTACCAATACTCTTCTCCCTAACCAACTATTTACCAAGGGCATGAAGTTGGTCTCTAATATGTTAGGGAGAGGTAACTTTGGTAGTGGATATTATAGTTTCTATTTTGATAATGACAATGTGTTGAGGCTCATGTATGATGGTCCTGACATTTCAAGTCTTTATTGGCCAAATCCTGGTTATAGTGTGTTTGACAATGGTAGAACAAACTATAACAGTAGCAGAATTGCTGTTTTTGATGATTTGGGTCGTTTTTTGTCCAGTGATCTATGGCGGTTTCGTGCAAGTGACATGGGTTTGGGGCCGAAAAGGCGGTTGACTATAGATTATGATGGGAATTTGAGACTTTATAGTCTCAATTCAACAGGGTTTTGGGTGGTGACTTGGGAAGCTCTCATTCAGAGGTGTAGGGTTCACGGGATTTATGGGAGAAATGGGATTTGTGTTTATACACCAGAGCCCAAATGTTCATGCCCTCCTGGCTATGAGGTGTTGGATAAAACTAACTGGAACAAAGCTCCTAATGATGTTGTTACATATACATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

344

Amino Acids

38.85

Weight (kDa)

8.15

Isoelectric Point (pI)

31.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 86 - 173 1.2e-21 D-mannose binding lectin
S_locus_glycop PF00954 266 - 325 4.1e-07 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 837
AccB1I GGYRCC 1 cut(s) 206
AccB7I CCANNNNNTGG 1 cut(s) 662
AciI CCGC 2 cut(s) 760, 799
AcoI YGGCCR 2 cut(s) 270, 653
AcsI RAATTY 4 cut(s) 34, 424, 462, 823
AdeI CACNNNGTG 1 cut(s) 458
AfiI CCNNNNNNNGG 5 cut(s) 246, 247, 264, 293, 662
AflIII ACRYGT 1 cut(s) 185
AgsI TTSAA 3 cut(s) 424, 642, 849
AjnI CCWGG 3 cut(s) 245, 661, 964
AjuI GAANNNNNNNTTGG 4 cut(s) 25, 57, 247, 279
AluBI AGCT 5 cut(s) 20, 418, 477, 878, 1004
AluI AGCT 5 cut(s) 20, 418, 477, 878, 1004
Alw26I GTCTC 4 cut(s) 375, 544, 823, 845
Ama87I CYCGRG 1 cut(s) 321
AoxI GGCC 4 cut(s) 270, 448, 653, 788
ApaI GGGCCC 1 cut(s) 452
ApoI RAATTY 4 cut(s) 34, 424, 462, 823
AspS9I GGNCC 4 cut(s) 448, 449, 629, 788
AsuHPI GGTGA 4 cut(s) 5, 229, 470, 877
AvaI CYCGRG 1 cut(s) 321
AvaII GGWCC 1 cut(s) 629
BaeGI GKGCMC 1 cut(s) 452
BalI TGGCCA 2 cut(s) 272, 655
BanI GGYRCC 1 cut(s) 206
BanII GRGCYC 3 cut(s) 305, 452, 948
BccI CCATC 6 cut(s) 236, 262, 320, 347, 620, 812
BciT130I CCWGG 3 cut(s) 247, 663, 966
BclI TGATCA 1 cut(s) 10
BcoDI GTCTC 4 cut(s) 375, 544, 823, 845
BfaI CTAG 1 cut(s) 387
BfmI CTRYAG 1 cut(s) 807
BglI GCCNNNNNGGC 2 cut(s) 796, 966
BlpI GCTNAGC 1 cut(s) 414
Bme1390I CCNGG 3 cut(s) 247, 663, 966
Bme18I GGWCC 1 cut(s) 629
BmeT110I CYCGRG 1 cut(s) 321
BmgT120I GGNCC 4 cut(s) 448, 449, 629, 788
BmiI GGNNCC 5 cut(s) 208, 304, 449, 450, 789
BmrFI CCNGG 3 cut(s) 247, 663, 966
BpmI CTGGAG 2 cut(s) 229, 289
Bpu1102I GCTNAGC 1 cut(s) 414
BsaI GGTCTC 2 cut(s) 375, 544
BsaJI CCNNGG 2 cut(s) 246, 522
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bsc4I CCNNNNNNNGG 5 cut(s) 246, 247, 264, 293, 662
Bse1I ACTGG 3 cut(s) 224, 747, 998
BseBI CCWGG 3 cut(s) 247, 663, 966
BseDI CCNNGG 2 cut(s) 246, 522
BseGI GGATG 3 cut(s) 26, 273, 358
BseLI CCNNNNNNNGG 5 cut(s) 246, 247, 264, 293, 662
BseMII CTCAG 2 cut(s) 147, 405
BseNI ACTGG 3 cut(s) 224, 747, 998
BseSI GKGCMC 1 cut(s) 452
BshFI GGCC 4 cut(s) 272, 450, 655, 790
BshNI GGYRCC 1 cut(s) 206
BsiHKCI CYCGRG 1 cut(s) 321
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 5 cut(s) 246, 247, 264, 293, 662
BsmAI GTCTC 4 cut(s) 375, 544, 823, 845
BsmFI GGGAC 1 cut(s) 263
BsnI GGCC 4 cut(s) 272, 450, 655, 790
Bso31I GGTCTC 2 cut(s) 375, 544
BsoBI CYCGRG 1 cut(s) 321
Bsp120I GGGCCC 1 cut(s) 448
Bsp1286I GDGCHC 3 cut(s) 305, 452, 948
Bsp143I GATC 2 cut(s) 10, 751
Bsp1720I GCTNAGC 1 cut(s) 414
BspACI CCGC 2 cut(s) 760, 799
BspANI GGCC 4 cut(s) 272, 450, 655, 790
BspCNI CTCAG 2 cut(s) 146, 406
BspLI GGNNCC 5 cut(s) 208, 304, 449, 450, 789
BspQI GCTCTTC 1 cut(s) 130
BspT107I GGYRCC 1 cut(s) 206
BspTNI GGTCTC 2 cut(s) 375, 544
BsrI ACTGG 3 cut(s) 224, 747, 998
BssECI CCNNGG 2 cut(s) 246, 522
BssMI GATC 2 cut(s) 10, 751
BssT1I CCWWGG 1 cut(s) 522
Bst2UI CCWGG 3 cut(s) 247, 663, 966
Bst4CI ACNGT 3 cut(s) 70, 259, 704
Bst6I CTCTTC 3 cut(s) 88, 130, 504
BstC8I GCNNGC 1 cut(s) 359
BstDEI CTNAG 2 cut(s) 133, 414
BstF5I GGATG 3 cut(s) 26, 273, 358
BstKTI GATC 2 cut(s) 13, 754
BstMAI GTCTC 4 cut(s) 375, 544, 823, 845
BstMBI GATC 2 cut(s) 10, 751
BstMWI GCNNNNNNNGC 4 cut(s) 401, 410, 796, 966
BstNI CCWGG 3 cut(s) 247, 663, 966
BstNSI RCATGY 2 cut(s) 189, 361
BstSCI CCNGG 3 cut(s) 245, 661, 964
BstSFI CTRYAG 1 cut(s) 807
BstSLI GKGCMC 1 cut(s) 452
BsuRI GGCC 4 cut(s) 272, 450, 655, 790
BtsCI GGATG 3 cut(s) 26, 273, 358
BtsIMutI CAGTG 4 cut(s) 66, 141, 314, 754
Cac8I GCNNGC 1 cut(s) 359
Cfr13I GGNCC 4 cut(s) 448, 449, 629, 788
CviAII CATG 6 cut(s) 186, 358, 529, 619, 778, 957
DdeI CTNAG 2 cut(s) 133, 414
DpnI GATC 2 cut(s) 12, 753
DpnII GATC 2 cut(s) 10, 751
DraIII CACNNNGTG 1 cut(s) 458
DrdI GACNNNNNNGTC 1 cut(s) 837
DseDI GACNNNNNNGTC 1 cut(s) 837
EaeI YGGCCR 2 cut(s) 270, 653
Eam1104I CTCTTC 3 cut(s) 88, 130, 504
EarI CTCTTC 3 cut(s) 88, 130, 504
Eco130I CCWWGG 1 cut(s) 522
Eco24I GRGCYC 3 cut(s) 305, 452, 948
Eco31I GGTCTC 2 cut(s) 375, 544
Eco47I GGWCC 1 cut(s) 629
Eco88I CYCGRG 1 cut(s) 321
EcoO109I RGGNCCY 1 cut(s) 448
EcoRI GAATTC 1 cut(s) 424
EcoRII CCWGG 3 cut(s) 245, 661, 964
EcoT14I CCWWGG 1 cut(s) 522
EcoT38I GRGCYC 3 cut(s) 305, 452, 948
ErhI CCWWGG 1 cut(s) 522
FaeI CATG 6 cut(s) 189, 361, 532, 622, 781, 960
FalI AAGNNNNNCTT 2 cut(s) 109, 141
FaqI GGGAC 1 cut(s) 263
FatI CATG 6 cut(s) 185, 357, 528, 618, 777, 956
FbaI TGATCA 1 cut(s) 10
FokI GGATG 3 cut(s) 13, 280, 365
FriOI GRGCYC 3 cut(s) 305, 452, 948
FspBI CTAG 1 cut(s) 387
GsuI CTGGAG 2 cut(s) 229, 289
HaeIII GGCC 4 cut(s) 272, 450, 655, 790
Hin1II CATG 6 cut(s) 189, 361, 532, 622, 781, 960
HincII GTYRAC 1 cut(s) 804
HindII GTYRAC 1 cut(s) 804
HindIII AAGCTT 1 cut(s) 475
HphI GGTGA 4 cut(s) 5, 229, 470, 877
Hpy166II GTNNAC 3 cut(s) 237, 804, 901
Hpy188I TCNGA 2 cut(s) 154, 888
Hpy188III TCNNGA 4 cut(s) 160, 306, 340, 632
Hpy8I GTNNAC 3 cut(s) 237, 804, 901
HpyAV CCTTC 2 cut(s) 51, 190
HpyCH4III ACNGT 3 cut(s) 70, 259, 704
HpyCH4V TGCA 4 cut(s) 89, 95, 361, 770
HpyF10VI GCNNNNNNNGC 4 cut(s) 401, 410, 796, 966
HpyF3I CTNAG 2 cut(s) 133, 414
Hsp92II CATG 6 cut(s) 189, 361, 532, 622, 781, 960
Ksp22I TGATCA 1 cut(s) 10
Kzo9I GATC 2 cut(s) 10, 751
LguI GCTCTTC 1 cut(s) 130
LmnI GCTCC 2 cut(s) 308, 1009
MaeI CTAG 1 cut(s) 387
MaeIII GTNAC 4 cut(s) 560, 773, 865, 1018
MalI GATC 2 cut(s) 12, 753
MboI GATC 2 cut(s) 10, 751
MboII GAAGA 3 cut(s) 75, 117, 491
MhlI GDGCHC 3 cut(s) 305, 452, 948
MlsI TGGCCA 2 cut(s) 272, 655
MluCI AATT 7 cut(s) 34, 261, 424, 462, 711, 823, 844
MluNI TGGCCA 2 cut(s) 272, 655
MmeI TCCRAC 1 cut(s) 960
Mox20I TGGCCA 2 cut(s) 272, 655
MscI TGGCCA 2 cut(s) 272, 655
MslI CAYNNNNRTG 1 cut(s) 68
Msp20I TGGCCA 2 cut(s) 272, 655
MspR9I CCNGG 3 cut(s) 247, 663, 966
MvaI CCWGG 3 cut(s) 247, 663, 966
MwoI GCNNNNNNNGC 4 cut(s) 401, 410, 796, 966
NdeII GATC 2 cut(s) 10, 751
NlaIII CATG 6 cut(s) 189, 361, 532, 622, 781, 960
NlaIV GGNNCC 5 cut(s) 208, 304, 449, 450, 789
NmuCI GTSAC 2 cut(s) 773, 865
NspI RCATGY 2 cut(s) 189, 361
PaeI GCATGC 1 cut(s) 361
PciI ACATGT 1 cut(s) 185
PciSI GCTCTTC 1 cut(s) 130
PflMI CCANNNNNTGG 1 cut(s) 662
PscI ACATGT 1 cut(s) 185
Psp6I CCWGG 3 cut(s) 245, 661, 964
PspGI CCWGG 3 cut(s) 245, 661, 964
PspN4I GGNNCC 5 cut(s) 208, 304, 449, 450, 789
PspOMI GGGCCC 1 cut(s) 448
PspPI GGNCC 4 cut(s) 448, 449, 629, 788
RseI CAYNNNNRTG 1 cut(s) 68
SapI GCTCTTC 1 cut(s) 130
Sau3AI GATC 2 cut(s) 10, 751
Sau96I GGNCC 4 cut(s) 448, 449, 629, 788
ScrFI CCNGG 3 cut(s) 247, 663, 966
SduI GDGCHC 3 cut(s) 305, 452, 948
SfcI CTRYAG 1 cut(s) 807
SinI GGWCC 1 cut(s) 629
SmiMI CAYNNNNRTG 1 cut(s) 68
SphI GCATGC 1 cut(s) 361
Sse9I AATT 7 cut(s) 34, 261, 424, 462, 711, 823, 844
SsiI CCGC 2 cut(s) 760, 799
SspMI CTAG 1 cut(s) 387
StyD4I CCNGG 3 cut(s) 245, 661, 964
StyI CCWWGG 1 cut(s) 522
TaaI ACNGT 3 cut(s) 70, 259, 704
TasI AATT 7 cut(s) 34, 261, 424, 462, 711, 823, 844
TscAI CASTG 4 cut(s) 73, 141, 321, 754
TseFI GTSAC 2 cut(s) 773, 865
Tsp45I GTSAC 2 cut(s) 773, 865
TspDTI ATGAA 4 cut(s) 15, 52, 545, 945
TspRI CASTG 4 cut(s) 73, 141, 321, 754
Van91I CCANNNNNTGG 1 cut(s) 662
VpaK11BI GGWCC 1 cut(s) 629
XapI RAATTY 4 cut(s) 34, 424, 462, 823
XceI RCATGY 2 cut(s) 189, 361
XspI CTAG 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.