FvH4_6g12920

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000166
Physical Location & Seq
Reverse (-)
7835918 .. 7836662
745 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g12920.t1

Sequence Viewer

Length: 552 bp
ATGAATATTTCCAAGTATATTCTTCTTTTGCTATTTGCAGCAACCTTTGCTAGGAGTCGAGCACAGTTAGAAGGGTTGCCAAGCTTAAAGCAACGGAACTTCTTGGTTTCACCAAGTGGAACCTTTTCTAGTGGATTTTACAAAGTTGGCGCCAATGCCTCCTGTTATGCAATTTGGTTCACCAATACTGTCAATAAAACAGTTGTCTGGATGGCTAACCGAGATAATCCTGTCAACAAAAGAGGCTCGAAGCTAACCCTCCATGGAAATGGCAACCTGGTTTTGACTGATGCACAAGGAGACAGAAATGGATCCTTGGATGAACTCTTGTTCTCAGATGTTGAACTTGGATTGGAAAAGCGGTACAAGATTGCATTAGGCACCGCAAATGGGTACTCCACTGAGTTGGATTTTCGAAAGTTCGTGGCACCAGAGGTTATATATATGGCTCCAGAGTGGATGGTGAATCTGAAAATTGATGCAAAGGCAGATGTCTACAGCTATCACTACGTCAATTTTAGCTTCAGACGATCTGCTAAGTCGGTCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

184

Amino Acids

20.51

Weight (kDa)

9.52

Isoelectric Point (pI)

43.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 67 - 100 9.2e-08 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 149, 380, 427
AccI GTMKAC 1 cut(s) 495
AciI CCGC 2 cut(s) 361, 384
AclWI GGATC 2 cut(s) 306, 319
AcuI CTGAAG 1 cut(s) 508
AcyI GRCGYC 1 cut(s) 150
AdeI CACNNNGTG 1 cut(s) 116
AfaI GTAC 2 cut(s) 365, 395
AfiI CCNNNNNNNGG 2 cut(s) 51, 390
AgsI TTSAA 1 cut(s) 344
AjnI CCWGG 1 cut(s) 276
AluBI AGCT 4 cut(s) 84, 253, 501, 522
AluI AGCT 4 cut(s) 84, 253, 501, 522
Alw21I GWGCWC 1 cut(s) 64
Alw26I GTCTC 1 cut(s) 294
AlwI GGATC 2 cut(s) 306, 319
ApeKI GCWGC 1 cut(s) 38
Asp700I GAANNNNTTC 1 cut(s) 124
AspLEI GCGC 1 cut(s) 152
AsuHPI GGTGA 3 cut(s) 102, 172, 475
AsuII TTCGAA 1 cut(s) 415
BamHI GGATCC 1 cut(s) 311
BanI GGYRCC 3 cut(s) 149, 380, 427
Bbv12I GWGCWC 1 cut(s) 64
BbvI GCAGC 1 cut(s) 50
BccI CCATC 2 cut(s) 205, 454
BciT130I CCWGG 1 cut(s) 278
BcoDI GTCTC 1 cut(s) 294
BfaI CTAG 2 cut(s) 51, 129
BfmI CTRYAG 1 cut(s) 496
BfoI RGCGCY 1 cut(s) 153
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
Bme1390I CCNGG 1 cut(s) 278
BmiI GGNNCC 6 cut(s) 121, 151, 313, 382, 429, 450
BmrFI CCNGG 1 cut(s) 278
BmsI GCATC 2 cut(s) 280, 469
BpmI CTGGAG 1 cut(s) 435
Bpu14I TTCGAA 1 cut(s) 415
BsaHI GRCGYC 1 cut(s) 150
BsaJI CCNNGG 2 cut(s) 262, 315
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 390
BseBI CCWGG 1 cut(s) 278
BseDI CCNNGG 2 cut(s) 262, 315
BseGI GGATG 3 cut(s) 216, 325, 465
BseLI CCNNNNNNNGG 2 cut(s) 51, 390
BseMII CTCAG 2 cut(s) 348, 393
BseXI GCAGC 1 cut(s) 50
Bsh1285I CGRYCG 1 cut(s) 546
BshNI GGYRCC 3 cut(s) 149, 380, 427
BsiEI CGRYCG 1 cut(s) 546
BsiHKAI GWGCWC 1 cut(s) 64
BslI CCNNNNNNNGG 2 cut(s) 51, 390
BsmAI GTCTC 1 cut(s) 294
Bsp119I TTCGAA 1 cut(s) 415
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 2 cut(s) 311, 530
Bsp19I CCATGG 1 cut(s) 262
BspACI CCGC 2 cut(s) 361, 384
BspCNI CTCAG 2 cut(s) 347, 394
BspLI GGNNCC 6 cut(s) 121, 151, 313, 382, 429, 450
BspPI GGATC 2 cut(s) 306, 319
BspT104I TTCGAA 1 cut(s) 415
BspT107I GGYRCC 3 cut(s) 149, 380, 427
BssECI CCNNGG 2 cut(s) 262, 315
BssMI GATC 2 cut(s) 311, 530
BssNI GRCGYC 1 cut(s) 150
BssT1I CCWWGG 2 cut(s) 262, 315
Bst2UI CCWGG 1 cut(s) 278
Bst4CI ACNGT 3 cut(s) 66, 190, 202
BstACI GRCGYC 1 cut(s) 150
BstAPI GCANNNNNTGC 1 cut(s) 47
BstBI TTCGAA 1 cut(s) 415
BstDEI CTNAG 3 cut(s) 334, 402, 537
BstDSI CCRYGG 1 cut(s) 262
BstENI CCTNNNNNAGG 1 cut(s) 49
BstF5I GGATG 3 cut(s) 216, 325, 465
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 2 cut(s) 314, 533
BstMAI GTCTC 1 cut(s) 294
BstMBI GATC 2 cut(s) 311, 530
BstMCI CGRYCG 1 cut(s) 546
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstNI CCWGG 1 cut(s) 278
BstSCI CCNGG 1 cut(s) 276
BstSFI CTRYAG 1 cut(s) 496
BstV1I GCAGC 1 cut(s) 50
BstX2I RGATCY 1 cut(s) 311
BstXI CCANNNNNNTGG 2 cut(s) 269, 406
BstYI RGATCY 1 cut(s) 311
BtgI CCRYGG 1 cut(s) 262
BtsCI GGATG 3 cut(s) 216, 325, 465
BtsIMutI CAGTG 1 cut(s) 399
CfoI GCGC 1 cut(s) 152
CsiI ACCWGGT 1 cut(s) 276
Csp6I GTAC 2 cut(s) 364, 394
CviAII CATG 1 cut(s) 263
CviJI RGCY 7 cut(s) 84, 215, 246, 253, 449, 501, 522
CviKI_1 RGCY 7 cut(s) 84, 215, 246, 253, 449, 501, 522
CviQI GTAC 2 cut(s) 364, 394
DdeI CTNAG 3 cut(s) 334, 402, 537
DinI GGCGCC 1 cut(s) 151
DpnI GATC 2 cut(s) 313, 532
DpnII GATC 2 cut(s) 311, 530
DraIII CACNNNGTG 1 cut(s) 116
Eco130I CCWWGG 2 cut(s) 262, 315
Eco57I CTGAAG 1 cut(s) 508
EcoNI CCTNNNNNAGG 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 276
EcoT14I CCWWGG 2 cut(s) 262, 315
EgeI GGCGCC 1 cut(s) 151
EheI GGCGCC 1 cut(s) 151
ErhI CCWWGG 2 cut(s) 262, 315
FaeI CATG 1 cut(s) 266
FaiI YATR 7 cut(s) 18, 168, 264, 440, 442, 444, 446
FatI CATG 1 cut(s) 262
FblI GTMKAC 1 cut(s) 495
Fnu4HI GCNGC 1 cut(s) 39
FokI GGATG 3 cut(s) 223, 332, 472
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 2 cut(s) 51, 129
GlaI GCGC 1 cut(s) 151
GluI GCNGC 1 cut(s) 39
GsuI CTGGAG 1 cut(s) 435
HaeII RGCGCY 1 cut(s) 153
HhaI GCGC 1 cut(s) 152
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 1 cut(s) 266
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HindIII AAGCTT 1 cut(s) 82
HinfI GANTC 2 cut(s) 55, 466
HphI GGTGA 3 cut(s) 102, 172, 475
Hpy166II GTNNAC 3 cut(s) 180, 235, 496
Hpy188I TCNGA 4 cut(s) 337, 471, 527, 551
Hpy188III TCNNGA 2 cut(s) 208, 452
Hpy8I GTNNAC 3 cut(s) 180, 235, 496
HpyAV CCTTC 1 cut(s) 65
HpyCH4III ACNGT 3 cut(s) 66, 190, 202
HpyCH4IV ACGT 1 cut(s) 510
HpyCH4V TGCA 5 cut(s) 38, 170, 293, 374, 482
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpyF3I CTNAG 3 cut(s) 334, 402, 537
HpySE526I ACGT 1 cut(s) 510
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 1 cut(s) 266
HspAI GCGC 1 cut(s) 150
KasI GGCGCC 1 cut(s) 149
Kzo9I GATC 2 cut(s) 311, 530
LmnI GCTCC 1 cut(s) 454
LpnPI CCDG 7 cut(s) 175, 193, 243, 263, 290, 444, 465
Lsp1109I GCAGC 1 cut(s) 50
LweI GCATC 2 cut(s) 280, 469
MabI ACCWGGT 1 cut(s) 276
MaeI CTAG 2 cut(s) 51, 129
MaeII ACGT 1 cut(s) 510
MalI GATC 2 cut(s) 313, 532
MboI GATC 2 cut(s) 311, 530
MboII GAAGA 1 cut(s) 14
MflI RGATCY 1 cut(s) 311
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 3 cut(s) 171, 474, 514
Mly113I GGCGCC 1 cut(s) 150
MlyI GAGTC 1 cut(s) 64
MmeI TCCRAC 1 cut(s) 387
MnlI CCTC 4 cut(s) 169, 236, 269, 427
MroXI GAANNNNTTC 1 cut(s) 124
MseI TTAA 1 cut(s) 86
MslI CAYNNNNRTG 1 cut(s) 267
MspR9I CCNGG 1 cut(s) 278
MvaI CCWGG 1 cut(s) 278
MwoI GCNNNNNNNGC 1 cut(s) 47
NarI GGCGCC 1 cut(s) 150
NcoI CCATGG 1 cut(s) 262
NdeII GATC 2 cut(s) 311, 530
NlaIII CATG 1 cut(s) 266
NlaIV GGNNCC 6 cut(s) 121, 151, 313, 382, 429, 450
NspV TTCGAA 1 cut(s) 415
PdmI GAANNNNTTC 1 cut(s) 124
PfeI GAWTC 1 cut(s) 466
PkrI GCNGC 1 cut(s) 40
PleI GAGTC 1 cut(s) 63
PluTI GGCGCC 1 cut(s) 153
PpsI GAGTC 1 cut(s) 63
Psp6I CCWGG 1 cut(s) 276
PspGI CCWGG 1 cut(s) 276
PspN4I GGNNCC 6 cut(s) 121, 151, 313, 382, 429, 450
PsuI RGATCY 1 cut(s) 311
RsaI GTAC 2 cut(s) 365, 395
RsaNI GTAC 2 cut(s) 364, 394
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 2 cut(s) 311, 530
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 1 cut(s) 278
SduI GDGCHC 1 cut(s) 64
SetI ASST 9 cut(s) 47, 86, 125, 255, 279, 438, 503, 513, 524
SexAI ACCWGGT 1 cut(s) 276
SfaNI GCATC 2 cut(s) 280, 469
SfcI CTRYAG 1 cut(s) 496
SfoI GGCGCC 1 cut(s) 151
SfuI TTCGAA 1 cut(s) 415
SmiMI CAYNNNNRTG 1 cut(s) 267
Sse9I AATT 3 cut(s) 171, 474, 514
SsiI CCGC 2 cut(s) 361, 384
SspDI GGCGCC 1 cut(s) 149
SspI AATATT 1 cut(s) 7
SspMI CTAG 2 cut(s) 51, 129
StyD4I CCNGG 1 cut(s) 276
StyI CCWWGG 2 cut(s) 262, 315
TaaI ACNGT 3 cut(s) 66, 190, 202
TaiI ACGT 1 cut(s) 513
TaqI TCGA 3 cut(s) 58, 248, 415
TaqII GACCGA 1 cut(s) 532
TasI AATT 3 cut(s) 171, 474, 514
TfiI GAWTC 1 cut(s) 466
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TscAI CASTG 1 cut(s) 406
TseI GCWGC 1 cut(s) 38
TspDTI ATGAA 2 cut(s) 17, 336
TspGWI ACGGA 1 cut(s) 109
TspRI CASTG 1 cut(s) 406
XagI CCTNNNNNAGG 1 cut(s) 49
XmiI GTMKAC 1 cut(s) 495
XmnI GAANNNNTTC 1 cut(s) 124
XspI CTAG 2 cut(s) 51, 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.