Rorug07G0183700

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000166
Physical Location & Seq
Forward (+)
15337294 .. 15339460
2167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0183700.1

Sequence Viewer

Length: 540 bp
ATGGTAATGAACTCCTTACTGCACCTCCCTAAACCCCATTTCCCTCCAACCTTCCATACACACCCAAAGCCCCAAACCCAACTCTCAAAGTCCACCAGTCAATATGGTAACCCGGAAACCATGGTGGGTAGTCTACTCGGGGCGGGTCTGACCCTGTCCCTGACGGTTATGGCACCCGCCTCAGCCGCTGAGCTACCGTTACTGGATTCTCTGCAGCTCACTGAACCTGCCAATGCCCTCTCCCTGCCCACATGGGCCATACACGTGTCCAGCGTCGTTGAATGGATTACAGCAATGGTGTTGGTGTGGCAGTATGGTGAGAAGTCCGGGTTCGAATCGTGGAAAGGGCTGGCTTGGGGTATGGTTCCCCTTCTTGGTGGAGCATTCTGTGCATGCACTTGGCATTTCTTTTATAACTCAGAGTCTCTTGAGGTATTGGTGGCTCTTCAAGCAGCCCTGACAGTTATAGGCAATGCCACAATGTGTTTTGCTGCATATCGTATTTACAGATCAACTGAAGAACGCTCCAAGAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

179

Amino Acids

19.58

Weight (kDa)

6.58

Isoelectric Point (pI)

37.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2499 PF10693 79 - 166 1.3e-39 Protein of unknown function (DUF2499)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 414
Acc36I ACCTGC 1 cut(s) 235
AccB1I GGYRCC 1 cut(s) 172
AccI GTMKAC 1 cut(s) 133
AciI CCGC 3 cut(s) 143, 177, 186
AcuI CTGAAG 1 cut(s) 537
AcvI CACGTG 1 cut(s) 265
AdeI CACNNNGTG 1 cut(s) 483
AfiI CCNNNNNNNGG 1 cut(s) 374
AflIII ACRYGT 2 cut(s) 262, 264
AgsI TTSAA 2 cut(s) 281, 449
AluBI AGCT 3 cut(s) 193, 217, 535
AluI AGCT 3 cut(s) 193, 217, 535
Alw26I GTCTC 1 cut(s) 429
AlwNI CAGNNNCTG 1 cut(s) 188
Ama87I CYCGRG 1 cut(s) 137
AoxI GGCC 1 cut(s) 255
ApeKI GCWGC 3 cut(s) 214, 452, 491
AspS9I GGNCC 1 cut(s) 255
AsuC2I CCSGG 2 cut(s) 113, 328
AsuHPI GGTGA 1 cut(s) 329
AsuII TTCGAA 1 cut(s) 333
AvaI CYCGRG 1 cut(s) 137
BanI GGYRCC 1 cut(s) 172
BbrPI CACGTG 1 cut(s) 265
BbvCI CCTCAGC 1 cut(s) 181
BbvI GCAGC 3 cut(s) 226, 464, 478
BcnI CCSGG 2 cut(s) 113, 328
BcoDI GTCTC 1 cut(s) 429
BfmI CTRYAG 1 cut(s) 212
BfuAI ACCTGC 1 cut(s) 235
BisI GCNGC 4 cut(s) 186, 215, 453, 492
BlpI GCTNAGC 1 cut(s) 189
BlsI GCNGC 4 cut(s) 187, 216, 454, 493
Bme1390I CCNGG 2 cut(s) 113, 328
BmeT110I CYCGRG 1 cut(s) 137
BmgT120I GGNCC 1 cut(s) 255
BmiI GGNNCC 2 cut(s) 174, 366
BmrFI CCNGG 2 cut(s) 113, 328
Bpu10I CCTNAGC 1 cut(s) 181
Bpu1102I GCTNAGC 1 cut(s) 189
Bpu14I TTCGAA 1 cut(s) 333
BpuEI CTTGAG 1 cut(s) 449
BpuMI CCSGG 2 cut(s) 113, 328
BsaAI YACGTR 1 cut(s) 265
BsaJI CCNNGG 1 cut(s) 120
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bsc4I CCNNNNNNNGG 1 cut(s) 374
Bse1I ACTGG 2 cut(s) 96, 207
Bse3DI GCAATG 2 cut(s) 300, 478
BseDI CCNNGG 1 cut(s) 120
BseLI CCNNNNNNNGG 1 cut(s) 374
BseMI GCAATG 2 cut(s) 300, 478
BseMII CTCAG 3 cut(s) 180, 195, 432
BseNI ACTGG 2 cut(s) 96, 207
BseXI GCAGC 3 cut(s) 226, 464, 478
BsgI GTGCAG 1 cut(s) 5
BshFI GGCC 1 cut(s) 257
BshNI GGYRCC 1 cut(s) 172
BsiHKCI CYCGRG 1 cut(s) 137
BsiSI CCGG 2 cut(s) 113, 327
BslFI GGGAC 1 cut(s) 142
BslI CCNNNNNNNGG 1 cut(s) 374
BsmAI GTCTC 1 cut(s) 429
BsmFI GGGAC 1 cut(s) 142
BsmI GAATGC 1 cut(s) 383
BsnI GGCC 1 cut(s) 257
BsoBI CYCGRG 1 cut(s) 137
Bsp119I TTCGAA 1 cut(s) 333
Bsp143I GATC 1 cut(s) 509
Bsp1720I GCTNAGC 1 cut(s) 189
Bsp19I CCATGG 1 cut(s) 120
BspACI CCGC 3 cut(s) 143, 177, 186
BspANI GGCC 1 cut(s) 257
BspCNI CTCAG 3 cut(s) 181, 194, 431
BspLI GGNNCC 2 cut(s) 174, 366
BspMAI CTGCAG 1 cut(s) 216
BspMI ACCTGC 1 cut(s) 235
BspQI GCTCTTC 1 cut(s) 450
BspT104I TTCGAA 1 cut(s) 333
BspT107I GGYRCC 1 cut(s) 172
BsrDI GCAATG 2 cut(s) 300, 478
BsrI ACTGG 2 cut(s) 96, 207
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 1 cut(s) 509
BssT1I CCWWGG 1 cut(s) 120
Bst4CI ACNGT 3 cut(s) 166, 198, 463
Bst6I CTCTTC 1 cut(s) 450
BstAPI GCANNNNNTGC 1 cut(s) 389
BstBAI YACGTR 1 cut(s) 265
BstBI TTCGAA 1 cut(s) 333
BstC8I GCNNGC 2 cut(s) 351, 394
BstDEI CTNAG 3 cut(s) 181, 189, 418
BstDSI CCRYGG 1 cut(s) 120
BstEII GGTNACC 1 cut(s) 107
BstKTI GATC 1 cut(s) 512
BstMAI GTCTC 1 cut(s) 429
BstMBI GATC 1 cut(s) 509
BstMWI GCNNNNNNNGC 3 cut(s) 185, 389, 449
BstNSI RCATGY 1 cut(s) 396
BstPI GGTNACC 1 cut(s) 107
BstSCI CCNGG 2 cut(s) 111, 326
BstSFI CTRYAG 1 cut(s) 212
BstV1I GCAGC 3 cut(s) 226, 464, 478
BsuRI GGCC 1 cut(s) 257
BtgI CCRYGG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 219
BveI ACCTGC 1 cut(s) 235
Cac8I GCNNGC 2 cut(s) 351, 394
CaiI CAGNNNCTG 1 cut(s) 188
Cfr13I GGNCC 1 cut(s) 255
CseI GACGC 1 cut(s) 262
CviAII CATG 3 cut(s) 121, 252, 393
DdeI CTNAG 3 cut(s) 181, 189, 418
DpnI GATC 1 cut(s) 511
DpnII GATC 1 cut(s) 509
DraIII CACNNNGTG 1 cut(s) 483
Eam1104I CTCTTC 1 cut(s) 450
EarI CTCTTC 1 cut(s) 450
Eco130I CCWWGG 1 cut(s) 120
Eco57I CTGAAG 1 cut(s) 537
Eco72I CACGTG 1 cut(s) 265
Eco88I CYCGRG 1 cut(s) 137
Eco91I GGTNACC 1 cut(s) 107
EcoO65I GGTNACC 1 cut(s) 107
EcoT14I CCWWGG 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 120
FaeI CATG 3 cut(s) 124, 255, 396
FaqI GGGAC 1 cut(s) 142
FatI CATG 3 cut(s) 120, 251, 392
FauI CCCGC 2 cut(s) 136, 184
FblI GTMKAC 1 cut(s) 133
Fnu4HI GCNGC 4 cut(s) 186, 215, 453, 492
Fsp4HI GCNGC 4 cut(s) 186, 215, 453, 492
GluI GCNGC 4 cut(s) 186, 215, 453, 492
HaeIII GGCC 1 cut(s) 257
HapII CCGG 2 cut(s) 113, 327
HgaI GACGC 1 cut(s) 262
Hin1II CATG 3 cut(s) 124, 255, 396
HindIII AAGCTT 1 cut(s) 533
HinfI GANTC 3 cut(s) 206, 335, 422
HpaII CCGG 2 cut(s) 113, 327
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 2 cut(s) 93, 134
Hpy188I TCNGA 2 cut(s) 150, 421
Hpy188III TCNNGA 1 cut(s) 428
Hpy8I GTNNAC 2 cut(s) 93, 134
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 2 cut(s) 61, 380
HpyCH4III ACNGT 3 cut(s) 166, 198, 463
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 5 cut(s) 22, 214, 392, 396, 494
HpyF10VI GCNNNNNNNGC 3 cut(s) 185, 389, 449
HpyF3I CTNAG 3 cut(s) 181, 189, 418
HpySE526I ACGT 1 cut(s) 264
Hsp92II CATG 3 cut(s) 124, 255, 396
Kzo9I GATC 1 cut(s) 509
LguI GCTCTTC 1 cut(s) 450
LmnI GCTCC 2 cut(s) 380, 530
Lsp1109I GCAGC 3 cut(s) 226, 464, 478
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 2 cut(s) 107, 198
MalI GATC 1 cut(s) 511
MboI GATC 1 cut(s) 509
MboII GAAGA 2 cut(s) 437, 530
MlyI GAGTC 1 cut(s) 431
MmeI TCCRAC 1 cut(s) 71
MnlI CCTC 5 cut(s) 35, 54, 190, 248, 424
MslI CAYNNNNRTG 1 cut(s) 263
MspA1I CMGCKG 1 cut(s) 188
MspI CCGG 2 cut(s) 113, 327
MspR9I CCNGG 2 cut(s) 113, 328
Mva1269I GAATGC 1 cut(s) 383
MwoI GCNNNNNNNGC 3 cut(s) 185, 389, 449
NciI CCSGG 2 cut(s) 113, 328
NcoI CCATGG 1 cut(s) 120
NdeII GATC 1 cut(s) 509
NlaIII CATG 3 cut(s) 124, 255, 396
NlaIV GGNNCC 2 cut(s) 174, 366
NspI RCATGY 1 cut(s) 396
NspV TTCGAA 1 cut(s) 333
PaeI GCATGC 1 cut(s) 396
PciSI GCTCTTC 1 cut(s) 450
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PctI GAATGC 1 cut(s) 383
PfeI GAWTC 2 cut(s) 206, 335
PflFI GACNNNGTC 1 cut(s) 154
PkrI GCNGC 4 cut(s) 187, 216, 454, 493
PleI GAGTC 1 cut(s) 430
PmaCI CACGTG 1 cut(s) 265
PmlI CACGTG 1 cut(s) 265
PpsI GAGTC 1 cut(s) 430
Ppu21I YACGTR 1 cut(s) 265
PsiI TTATAA 1 cut(s) 414
PspCI CACGTG 1 cut(s) 265
PspEI GGTNACC 1 cut(s) 107
PspN4I GGNNCC 2 cut(s) 174, 366
PspPI GGNCC 1 cut(s) 255
PstI CTGCAG 1 cut(s) 216
PstNI CAGNNNCTG 1 cut(s) 188
PsyI GACNNNGTC 1 cut(s) 154
RseI CAYNNNNRTG 1 cut(s) 263
SapI GCTCTTC 1 cut(s) 450
SatI GCNGC 4 cut(s) 186, 215, 453, 492
Sau3AI GATC 1 cut(s) 509
Sau96I GGNCC 1 cut(s) 255
SchI GAGTC 1 cut(s) 431
ScrFI CCNGG 2 cut(s) 113, 328
SetI ASST 8 cut(s) 27, 53, 195, 219, 229, 267, 435, 537
SfcI CTRYAG 1 cut(s) 212
SfuI TTCGAA 1 cut(s) 333
SmiMI CAYNNNNRTG 1 cut(s) 263
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
SphI GCATGC 1 cut(s) 396
SsiI CCGC 3 cut(s) 143, 177, 186
StyD4I CCNGG 2 cut(s) 111, 326
StyI CCWWGG 1 cut(s) 120
TaaI ACNGT 3 cut(s) 166, 198, 463
TaiI ACGT 1 cut(s) 267
TaqI TCGA 1 cut(s) 333
TauI GCSGC 1 cut(s) 188
TfiI GAWTC 2 cut(s) 206, 335
TscAI CASTG 1 cut(s) 226
TseI GCWGC 3 cut(s) 214, 452, 491
TspDTI ATGAA 1 cut(s) 23
TspRI CASTG 1 cut(s) 226
Tth111I GACNNNGTC 1 cut(s) 154
XceI RCATGY 1 cut(s) 396
XmiI GTMKAC 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.