Rw3G011260

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000166
Physical Location & Seq
Reverse (-)
10901140 .. 10903509
2370 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G011260.1

Sequence Viewer

Length: 2370 bp
ATGGAAGTTCCCAAGTTTATTCTTGTTTTGCTATTTGCAGCAACCTTTGCTTGGAGTCGAGCACAGTTAGAAGGGATGTCAAGCTTAAAGCAAGGGAACTCCTTGAAAGTTGAGGAAGAGAGCAACTTCTTGGTTTCACCAAATGGAACTTTTTCGAGCGGATTTTACAAAGTTGGCGCCAATGCCTCCTGTTATTCAATATGGTTCACAAATAGTGCCGACAAAACAGTTGTCTGGATGGCTAATCGAAATAAGCCTGTCAGCGAAAGACGCTCGAAGCTAACCCTCCATGGAAATGGCAACCTGGTTTTGACTGATGCACTAGGTTCGGTTGTGTGGTCAACCAACACAATCTCTAAGGAAGTCATGGAACTTCAACTTCTTGAAACAGGAAACTTGGTGCTGAGGAACCAAGACGACAGGATCATCTGGCAGAGTTTTGATTCTCCAACGGATACACTTCTACCATCACAGCCACTCACCAAGAACACAACCTTGGTGTCCATGAGAAGCCAAGGTACATACTTATCTGGATTCTATAACTTCAAGTTCGATGATAACAGTATCTTGTTTCTCATCTACAATGGCCCTCTACTTTCTAGTGTTTATTGGCCCAAGATTGTTTCAACTGTTTTTGAAAGTGGTAGAAATCCTTACAACAGCTCTAGAGTGGCAATTTTAGATGTGGCTGGACAATTTATATCTAGTGACAATATGCAGTTCTATGCATCTGACTATGGGGTTGGTCCAAAGCGGCGTTTAACAATGGATTATGATGGCATCTTAAGATTGTACAGTCTTGATGAATCAGCCGGGAATTGGAAACTGTCATGGTTGCCTGATGGTGTCGATGCATGCCTGGTTCAGGGCTTGTGTGGTGAATATGGTATTTGCACATACAAACCACTACCTACTTGTACTTGCCCTTCAGGGTTTTCCCTAAACGATCCCTCAGACTGGTCCAAAGGCTGCTCACCTCCCTTCAATTTGACCCAAGATACAAGCAAGCTAGACTTCTTGGAGCTCCCTTACACAGATTACTATGGATATGACTTGGAAACCTATCAACTTGGAATTTCTTTTGAAGCATGCAGGAATTCATGCCTAGTGGATTCGAGATGCTTGGGATTCGGATATGCGCTGGATGGATTAGGACAATGTTACCCTAAGAGTCTTCTGCTTAATGGATACCGTATGTCAAATGTTAAGAGCATCTTGCATGTTAAGATTCCAAAAGATTTTCTGACCCCTGGTGCAGTCCAAAGCAAACTAGAAGCACATGATTTGAGTTGTTCAGCTCAGTTTTTTGTAAGTAGTGATCTTGAAACAGAAAAGGGCAATGGAAATCAGTATATGAAATACCTTATCGGATTTGTGAGTTCCTTTGCAATAATTGAAGCAATCTGCATTGGTTTGGCATGGTGGTATGTGTTCCGAAAACAAGCTCATGAGGAACTGGTGAACATGGGTTACATGACATTAGCCATAAATGCTGTAGGATTTAAACATTTCACCTATGCAGAACTAAAGAAAGCAACCAATGACTTCAAACAGGAGATAGGAAAAGGAGGGTTCGGAACAGTCTATAAAGGGGTTCTGGATGGTGAAAGATTTGTAGCTGTGAAGAGATTAGAAGGCATTCTGCAAGGAGATGCCGAATTTTGGGCCGAGGTGAGTGTCATAGGGAATATCAATCATATGAACTTGGTTAAACTATATGGTTTCTGTGCTGATAATAATCATAAGCTATTGGTGTATGAGTACCTGGAGAATGGATCCTTGGATAAACTCTTGTTCTCAGATGTTGAACTTGGATTGGAAAAGCGGTACAAGATTGCATTAGGCACCGCAAAGGGTTTGTCATATCTACATGAGGAGTGCCTTGAATGGGTACTCCACTGTGATGTAAAGCCTCAAAATATACTGTTAGACGACCATCTTGAACCTAAGGTGGCAGATTTTGGCATGTCAAAGTTGTTCAAAGACATTAATGATGAAGGCAATGGATTTTCTAGAGTTCGAGGCACCAGAGGTTATATGGCTCCAGAGTGGATGGTGAATCTGAAAATTGATGCAAAGGCAGATGTCTACAGCTATGGGATTGTTCTGTTGGAGCTACTGACTGGAAAGAGTGCTTCTATTCTGCTTTCAGCTTTTGCACAAGAGTACATTGAACACAACCAACTGGTACAATGTGTGACTGAAAAGATCAGAGTCGAAGGGATTAAGGAAGTGATAGATCCGCGACTTCATCATGATTTCAACAAAAAGAAGCTTGAAAGATTGATGAAGGTTGCTCTTTTGTGTGTACAAGAAGATCGAAGTGCAAGACCTGCCATGAGTAAGGTGGTGGAGCTTCTACTTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

789

Amino Acids

88.55

Weight (kDa)

5.64

Isoelectric Point (pI)

34.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 76 - 164 1e-25 D-mannose binding lectin
S_locus_glycop PF00954 251 - 313 2.1e-08 S-locus glycoprotein domain
PK_Tyr_Ser-Thr PF07714 516 - 787 6.7e-43 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 517 - 784 1.6e-48 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2341
AccB1I GGYRCC 3 cut(s) 176, 1844, 2024
AccBSI CCGCTC 1 cut(s) 159
AccI GTMKAC 1 cut(s) 2088
AccII CGCG 1 cut(s) 2245
AciI CCGC 5 cut(s) 159, 754, 1825, 1848, 2243
AclWI GGATC 5 cut(s) 431, 941, 1770, 1783, 2234
AcsI RAATTY 3 cut(s) 1074, 1096, 1658
AcuI CTGAAG 1 cut(s) 912
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 9 cut(s) 520, 794, 919, 1763, 1829, 1893, 2168, 2190, 2310
AfiI CCNNNNNNNGG 6 cut(s) 51, 819, 865, 957, 1662, 1888
AflII CTTAAG 1 cut(s) 784
AjnI CCWGG 4 cut(s) 303, 858, 1249, 1764
AjuI GAANNNNNNNTTGG 4 cut(s) 479, 511, 1763, 1795
Alw21I GWGCWC 2 cut(s) 64, 1026
AlwI GGATC 5 cut(s) 431, 941, 1770, 1783, 2234
AoxI GGCC 3 cut(s) 586, 611, 1665
ApeKI GCWGC 2 cut(s) 38, 969
ApoI RAATTY 3 cut(s) 1074, 1096, 1658
ArsI GACNNNNNNTTYG 4 cut(s) 216, 248, 1844, 1876
AseI ATTAAT 1 cut(s) 1989
Asp700I GAANNNNTTC 2 cut(s) 151, 1638
AspLEI GCGC 2 cut(s) 179, 1141
AspS9I GGNCC 5 cut(s) 587, 612, 746, 960, 1665
AsuC2I CCSGG 1 cut(s) 814
AsuHPI GGTGA 9 cut(s) 129, 472, 890, 966, 1471, 1504, 1616, 1684, 2068
AvaII GGWCC 2 cut(s) 746, 960
AxyI CCTNAGG 1 cut(s) 1947
BamHI GGATCC 1 cut(s) 1775
BanI GGYRCC 3 cut(s) 176, 1844, 2024
BanII GRGCYC 1 cut(s) 1026
BarI GAAGNNNNNNTAC 4 cut(s) 502, 534, 910, 942
BbsI GAAGAC 1 cut(s) 1166
Bbv12I GWGCWC 2 cut(s) 64, 1026
BbvCI CCTCAGC 1 cut(s) 404
BbvI GCAGC 2 cut(s) 50, 956
BccI CCATC 8 cut(s) 232, 475, 770, 836, 1139, 1595, 1944, 2047
BcgI CGANNNNNNTGC 2 cut(s) 309, 343
BciT130I CCWGG 4 cut(s) 305, 860, 1251, 1766
BciVI GTATCC 2 cut(s) 448, 1181
BcnI CCSGG 1 cut(s) 814
BfaI CTAG 8 cut(s) 323, 600, 666, 705, 1010, 1106, 1271, 2013
BfmI CTRYAG 2 cut(s) 1494, 2089
BfoI RGCGCY 1 cut(s) 180
BfrI CTTAAG 1 cut(s) 784
BfuAI ACCTGC 1 cut(s) 2341
BfuI GTATCC 2 cut(s) 448, 1181
BisI GCNGC 3 cut(s) 39, 755, 970
BlsI GCNGC 3 cut(s) 40, 756, 971
Bme1390I CCNGG 5 cut(s) 305, 814, 860, 1251, 1766
Bme18I GGWCC 2 cut(s) 746, 960
BmgT120I GGNCC 5 cut(s) 587, 612, 746, 960, 1665
BmiI GGNNCC 6 cut(s) 178, 410, 1777, 1846, 2026, 2043
BmrFI CCNGG 5 cut(s) 305, 814, 860, 1251, 1766
BmsI GCATC 8 cut(s) 307, 737, 789, 841, 1109, 1221, 1642, 2062
BpiI GAAGAC 1 cut(s) 1166
BpmI CTGGAG 2 cut(s) 1787, 2028
Bpu10I CCTNAGC 1 cut(s) 404
BpuMI CCSGG 1 cut(s) 814
BsaBI GATNNNNATC 1 cut(s) 1737
BsaHI GRCGYC 1 cut(s) 177
BsaJI CCNNGG 6 cut(s) 289, 495, 514, 1249, 1668, 1779
Bsc4I CCNNNNNNNGG 6 cut(s) 51, 819, 865, 957, 1662, 1888
Bse1I ACTGG 4 cut(s) 962, 1461, 2128, 2190
Bse21I CCTNAGG 1 cut(s) 1947
Bse3DI GCAATG 2 cut(s) 1345, 2008
Bse8I GATNNNNATC 1 cut(s) 1737
BseBI CCWGG 4 cut(s) 305, 860, 1251, 1766
BseDI CCNNGG 6 cut(s) 289, 495, 514, 1249, 1668, 1779
BseGI GGATG 5 cut(s) 81, 243, 1150, 1606, 2058
BseJI GATNNNNATC 1 cut(s) 1737
BseLI CCNNNNNNNGG 6 cut(s) 51, 819, 865, 957, 1662, 1888
BseMI GCAATG 2 cut(s) 1345, 2008
BseMII CTCAG 4 cut(s) 395, 966, 1313, 1812
BseNI ACTGG 4 cut(s) 962, 1461, 2128, 2190
BseRI GAGGAG 1 cut(s) 1889
BseXI GCAGC 2 cut(s) 50, 956
BsgI GTGCAG 1 cut(s) 1275
Bsh1236I CGCG 1 cut(s) 2245
BshFI GGCC 3 cut(s) 588, 613, 1667
BshNI GGYRCC 3 cut(s) 176, 1844, 2024
BsiHKAI GWGCWC 2 cut(s) 64, 1026
BsiSI CCGG 1 cut(s) 813
BslI CCNNNNNNNGG 6 cut(s) 51, 819, 865, 957, 1662, 1888
BsmI GAATGC 1 cut(s) 1638
BsnI GGCC 3 cut(s) 588, 613, 1667
Bsp1286I GDGCHC 2 cut(s) 64, 1026
Bsp1407I TGTACA 2 cut(s) 792, 2308
Bsp143I GATC 7 cut(s) 423, 946, 1318, 1775, 2208, 2239, 2317
Bsp19I CCATGG 1 cut(s) 289
BspACI CCGC 5 cut(s) 159, 754, 1825, 1848, 2243
BspANI GGCC 3 cut(s) 588, 613, 1667
BspCNI CTCAG 4 cut(s) 396, 965, 1312, 1811
BspFNI CGCG 1 cut(s) 2245
BspHI TCATGA 2 cut(s) 1447, 2254
BspLI GGNNCC 6 cut(s) 178, 410, 1777, 1846, 2026, 2043
BspMI ACCTGC 1 cut(s) 2341
BspPI GGATC 5 cut(s) 431, 941, 1770, 1783, 2234
BspT107I GGYRCC 3 cut(s) 176, 1844, 2024
BspTI CTTAAG 1 cut(s) 784
BsrBI CCGCTC 1 cut(s) 159
BsrDI GCAATG 2 cut(s) 1345, 2008
BsrGI TGTACA 2 cut(s) 792, 2308
BsrI ACTGG 4 cut(s) 962, 1461, 2128, 2190
BssECI CCNNGG 6 cut(s) 289, 495, 514, 1249, 1668, 1779
BssMI GATC 7 cut(s) 423, 946, 1318, 1775, 2208, 2239, 2317
BssNI GRCGYC 1 cut(s) 177
BssT1I CCWWGG 4 cut(s) 289, 495, 514, 1779
Bst2UI CCWGG 4 cut(s) 305, 860, 1251, 1766
Bst6I CTCTTC 2 cut(s) 111, 1619
BstACI GRCGYC 1 cut(s) 177
BstAFI CTTAAG 1 cut(s) 784
BstAPI GCANNNNNTGC 2 cut(s) 47, 2333
BstAUI TGTACA 2 cut(s) 792, 2308
BstC8I GCNNGC 3 cut(s) 856, 1007, 1090
BstDEI CTNAG 7 cut(s) 357, 404, 952, 1167, 1299, 1798, 1947
BstDSI CCRYGG 1 cut(s) 289
BstENI CCTNNNNNAGG 1 cut(s) 863
BstF5I GGATG 5 cut(s) 81, 243, 1150, 1606, 2058
BstFNI CGCG 1 cut(s) 2245
BstH2I RGCGCY 1 cut(s) 180
BstHHI GCGC 2 cut(s) 179, 1141
BstKTI GATC 7 cut(s) 426, 949, 1321, 1778, 2211, 2242, 2320
BstMBI GATC 7 cut(s) 423, 946, 1318, 1775, 2208, 2239, 2317
BstMWI GCNNNNNNNGC 4 cut(s) 47, 270, 1490, 2333
BstNI CCWGG 4 cut(s) 305, 860, 1251, 1766
BstNSI RCATGY 4 cut(s) 858, 1092, 1223, 1969
BstSCI CCNGG 5 cut(s) 303, 812, 858, 1249, 1764
BstSFI CTRYAG 2 cut(s) 1494, 2089
BstUI CGCG 1 cut(s) 2245
BstV1I GCAGC 2 cut(s) 50, 956
BstV2I GAAGAC 1 cut(s) 1166
BstX2I RGATCY 2 cut(s) 1775, 2239
BstXI CCANNNNNNTGG 1 cut(s) 296
BstYI RGATCY 2 cut(s) 1775, 2239
Bsu36I CCTNAGG 1 cut(s) 1947
BsuI GTATCC 2 cut(s) 448, 1181
BsuRI GGCC 3 cut(s) 588, 613, 1667
BtgI CCRYGG 1 cut(s) 289
BtsCI GGATG 5 cut(s) 81, 243, 1150, 1606, 2058
BtsIMutI CAGTG 1 cut(s) 1897
BveI ACCTGC 1 cut(s) 2341
Cac8I GCNNGC 3 cut(s) 856, 1007, 1090
CciI TCATGA 2 cut(s) 1447, 2254
CfoI GCGC 2 cut(s) 179, 1141
Cfr13I GGNCC 5 cut(s) 587, 612, 746, 960, 1665
CseI GACGC 1 cut(s) 279
CsiI ACCWGGT 1 cut(s) 303
Csp6I GTAC 9 cut(s) 519, 793, 918, 1762, 1828, 1892, 2167, 2189, 2309
CviQI GTAC 9 cut(s) 519, 793, 918, 1762, 1828, 1892, 2167, 2189, 2309
DdeI CTNAG 7 cut(s) 357, 404, 952, 1167, 1299, 1798, 1947
DinI GGCGCC 1 cut(s) 178
DpnI GATC 7 cut(s) 425, 948, 1320, 1777, 2210, 2241, 2319
DpnII GATC 7 cut(s) 423, 946, 1318, 1775, 2208, 2239, 2317
DraI TTTAAA 1 cut(s) 1504
Eam1104I CTCTTC 2 cut(s) 111, 1619
EarI CTCTTC 2 cut(s) 111, 1619
Ecl136II GAGCTC 1 cut(s) 1024
Eco130I CCWWGG 4 cut(s) 289, 495, 514, 1779
Eco24I GRGCYC 1 cut(s) 1026
Eco47I GGWCC 2 cut(s) 746, 960
Eco53kI GAGCTC 1 cut(s) 1024
Eco57I CTGAAG 1 cut(s) 912
Eco81I CCTNAGG 1 cut(s) 1947
EcoICRI GAGCTC 1 cut(s) 1024
EcoNI CCTNNNNNAGG 1 cut(s) 863
EcoRI GAATTC 1 cut(s) 1096
EcoRII CCWGG 4 cut(s) 303, 858, 1249, 1764
EcoT14I CCWWGG 4 cut(s) 289, 495, 514, 1779
EcoT22I ATGCAT 2 cut(s) 730, 856
EcoT38I GRGCYC 1 cut(s) 1026
EgeI GGCGCC 1 cut(s) 178
EheI GGCGCC 1 cut(s) 178
ErhI CCWWGG 4 cut(s) 289, 495, 514, 1779
FalI AAGNNNNNCTT 4 cut(s) 998, 1030, 1199, 1231
FauNDI CATATG 1 cut(s) 1698
FblI GTMKAC 1 cut(s) 2088
Fnu4HI GCNGC 3 cut(s) 39, 755, 970
FokI GGATG 5 cut(s) 88, 250, 1157, 1613, 2065
FriOI GRGCYC 1 cut(s) 1026
Fsp4HI GCNGC 3 cut(s) 39, 755, 970
FspBI CTAG 8 cut(s) 323, 600, 666, 705, 1010, 1106, 1271, 2013
GlaI GCGC 2 cut(s) 178, 1140
GluI GCNGC 3 cut(s) 39, 755, 970
GsuI CTGGAG 2 cut(s) 1787, 2028
HaeII RGCGCY 1 cut(s) 180
HaeIII GGCC 3 cut(s) 588, 613, 1667
HapII CCGG 1 cut(s) 813
HgaI GACGC 1 cut(s) 279
HhaI GCGC 2 cut(s) 179, 1141
Hin1I GRCGYC 1 cut(s) 177
Hin6I GCGC 2 cut(s) 177, 1139
HinP1I GCGC 2 cut(s) 177, 1139
HincII GTYRAC 1 cut(s) 342
HindII GTYRAC 1 cut(s) 342
HindIII AAGCTT 2 cut(s) 82, 2273
HpaII CCGG 1 cut(s) 813
HphI GGTGA 9 cut(s) 129, 472, 890, 966, 1471, 1504, 1616, 1684, 2068
Hpy166II GTNNAC 5 cut(s) 207, 342, 1462, 2089, 2309
Hpy8I GTNNAC 5 cut(s) 207, 342, 1462, 2089, 2309
HpyAV CCTTC 7 cut(s) 65, 936, 991, 1628, 1991, 2213, 2284
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 270, 1490, 2333
HpyF3I CTNAG 7 cut(s) 357, 404, 952, 1167, 1299, 1798, 1947
Hsp92I GRCGYC 1 cut(s) 177
HspAI GCGC 2 cut(s) 177, 1139
KasI GGCGCC 1 cut(s) 176
Kzo9I GATC 7 cut(s) 423, 946, 1318, 1775, 2208, 2239, 2317
LmnI GCTCC 5 cut(s) 1021, 1029, 2047, 2113, 2353
Lsp1109I GCAGC 2 cut(s) 50, 956
LweI GCATC 8 cut(s) 307, 737, 789, 841, 1109, 1221, 1642, 2062
MabI ACCWGGT 1 cut(s) 303
MaeI CTAG 8 cut(s) 323, 600, 666, 705, 1010, 1106, 1271, 2013
MaeIII GTNAC 4 cut(s) 707, 1160, 1469, 2197
MalI GATC 7 cut(s) 425, 948, 1320, 1777, 2210, 2241, 2319
MbiI CCGCTC 1 cut(s) 159
MboI GATC 7 cut(s) 423, 946, 1318, 1775, 2208, 2239, 2317
MboII GAAGA 4 cut(s) 128, 1166, 1636, 2327
MflI RGATCY 2 cut(s) 1775, 2239
MhlI GDGCHC 2 cut(s) 64, 1026
MluCI AATT 9 cut(s) 675, 695, 817, 985, 1074, 1096, 1392, 1658, 2067
Mly113I GGCGCC 1 cut(s) 177
MlyI GAGTC 3 cut(s) 64, 1180, 2223
MmeI TCCRAC 2 cut(s) 473, 2091
Mph1103I ATGCAT 2 cut(s) 730, 856
MroXI GAANNNNTTC 2 cut(s) 151, 1638
MslI CAYNNNNRTG 2 cut(s) 294, 1902
MspCI CTTAAG 1 cut(s) 784
MspI CCGG 1 cut(s) 813
MspR9I CCNGG 5 cut(s) 305, 814, 860, 1251, 1766
Mva1269I GAATGC 1 cut(s) 1638
MvaI CCWGG 4 cut(s) 305, 860, 1251, 1766
MvnI CGCG 1 cut(s) 2245
MwoI GCNNNNNNNGC 4 cut(s) 47, 270, 1490, 2333
NarI GGCGCC 1 cut(s) 177
NciI CCSGG 1 cut(s) 814
NcoI CCATGG 1 cut(s) 289
NdeI CATATG 1 cut(s) 1698
NdeII GATC 7 cut(s) 423, 946, 1318, 1775, 2208, 2239, 2317
NlaIV GGNNCC 6 cut(s) 178, 410, 1777, 1846, 2026, 2043
NmeAIII GCCGAG 1 cut(s) 1693
NmuCI GTSAC 2 cut(s) 707, 2197
NsiI ATGCAT 2 cut(s) 730, 856
NspI RCATGY 4 cut(s) 858, 1092, 1223, 1969
PaeI GCATGC 2 cut(s) 858, 1092
PagI TCATGA 2 cut(s) 1447, 2254
PctI GAATGC 1 cut(s) 1638
PdmI GAANNNNTTC 2 cut(s) 151, 1638
PfeI GAWTC 7 cut(s) 443, 534, 806, 1112, 1128, 1228, 2059
PkrI GCNGC 3 cut(s) 40, 756, 971
PleI GAGTC 3 cut(s) 63, 1179, 2222
PluTI GGCGCC 1 cut(s) 180
PpsI GAGTC 3 cut(s) 63, 1179, 2222
PshBI ATTAAT 1 cut(s) 1989
Psp124BI GAGCTC 1 cut(s) 1026
Psp6I CCWGG 4 cut(s) 303, 858, 1249, 1764
PspGI CCWGG 4 cut(s) 303, 858, 1249, 1764
PspN4I GGNNCC 6 cut(s) 178, 410, 1777, 1846, 2026, 2043
PspPI GGNCC 5 cut(s) 587, 612, 746, 960, 1665
PsrI GAACNNNNNNTAC 2 cut(s) 1454, 1486
PsuI RGATCY 2 cut(s) 1775, 2239
RsaI GTAC 9 cut(s) 520, 794, 919, 1763, 1829, 1893, 2168, 2190, 2310
RsaNI GTAC 9 cut(s) 519, 793, 918, 1762, 1828, 1892, 2167, 2189, 2309
RseI CAYNNNNRTG 2 cut(s) 294, 1902
SacI GAGCTC 1 cut(s) 1026
SatI GCNGC 3 cut(s) 39, 755, 970
Sau3AI GATC 7 cut(s) 423, 946, 1318, 1775, 2208, 2239, 2317
Sau96I GGNCC 5 cut(s) 587, 612, 746, 960, 1665
SchI GAGTC 3 cut(s) 64, 1180, 2223
ScrFI CCNGG 5 cut(s) 305, 814, 860, 1251, 1766
SduI GDGCHC 2 cut(s) 64, 1026
SexAI ACCWGGT 1 cut(s) 303
SfaNI GCATC 8 cut(s) 307, 737, 789, 841, 1109, 1221, 1642, 2062
SfcI CTRYAG 2 cut(s) 1494, 2089
SfoI GGCGCC 1 cut(s) 178
SinI GGWCC 2 cut(s) 746, 960
SmiMI CAYNNNNRTG 2 cut(s) 294, 1902
SmlI CTYRAG 2 cut(s) 784, 2363
SmoI CTYRAG 2 cut(s) 784, 2363
SphI GCATGC 2 cut(s) 858, 1092
Sse9I AATT 9 cut(s) 675, 695, 817, 985, 1074, 1096, 1392, 1658, 2067
SsiI CCGC 5 cut(s) 159, 754, 1825, 1848, 2243
SspDI GGCGCC 1 cut(s) 176
SspMI CTAG 8 cut(s) 323, 600, 666, 705, 1010, 1106, 1271, 2013
SstI GAGCTC 1 cut(s) 1026
StyD4I CCNGG 5 cut(s) 303, 812, 858, 1249, 1764
StyI CCWWGG 4 cut(s) 289, 495, 514, 1779
TasI AATT 9 cut(s) 675, 695, 817, 985, 1074, 1096, 1392, 1658, 2067
TatI WGTACW 4 cut(s) 792, 917, 2166, 2308
TauI GCSGC 1 cut(s) 757
TfiI GAWTC 7 cut(s) 443, 534, 806, 1112, 1128, 1228, 2059
TscAI CASTG 1 cut(s) 1904
TseFI GTSAC 2 cut(s) 707, 2197
TseI GCWGC 2 cut(s) 38, 969
Tsp45I GTSAC 2 cut(s) 707, 2197
TspDTI ATGAA 7 cut(s) 819, 1089, 1370, 1715, 2010, 2240, 2303
TspGWI ACGGA 1 cut(s) 467
TspRI CASTG 1 cut(s) 1904
Vha464I CTTAAG 1 cut(s) 784
VpaK11BI GGWCC 2 cut(s) 746, 960
VspI ATTAAT 1 cut(s) 1989
XagI CCTNNNNNAGG 1 cut(s) 863
XapI RAATTY 3 cut(s) 1074, 1096, 1658
XbaI TCTAGA 2 cut(s) 665, 2012
XceI RCATGY 4 cut(s) 858, 1092, 1223, 1969
XcmI CCANNNNNNNNNTGG 2 cut(s) 2035, 2344
XmiI GTMKAC 1 cut(s) 2088
XmnI GAANNNNTTC 2 cut(s) 151, 1638
XspI CTAG 8 cut(s) 323, 600, 666, 705, 1010, 1106, 1271, 2013
Zsp2I ATGCAT 2 cut(s) 730, 856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.