Rorug06G0367700

Receptor protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
51504678 .. 51508551
3874 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0367700.1

Sequence Viewer

Length: 2652 bp
ATGGCGGCAGCAGAGAATTCATCAGGTGGCGGAAGGAGGAATTCCAACACTCAGCTCCTGGAAGAGCTAGAAGCGCTCAGTGAGTCACTCTACCAATCCCACACGTCCACCACTACCACTCGAAGAACTGCCTCCCTTGCTCTTCCGCGAAGCTCGAATCCTGCAATCCCATCAAGAGATGAAATTGCTGCCGCGGCTAAAGTTGAGGAGATCAAAGCCAATAGCACCAAACCACTGAGAAGACGTTTGTCTTTGTCGCCTTGGCGCTCACGTCCAAACGAAAATGAACACAAAGATCGAGGCAAGGGGACGAGTAGTATTAATCAGCTGGAGCTGAAGAGCAATGTGGAGGAGAGATCAAGTAGCAAAGAGAAAAAGGGTATTTGGAATTGGAAGCCGATTCGTGCTATATCCCACATTGGAATGCACAAGATCAGCTGCTTGTTTTCGGTAGAGGTTGTCAGTGCACAAGGCCTTCCTGCTTCGATGAATGGCCTTCGTCTTTCGATTTGTGTTAGGAAGAAGGAGAGCAAAGACGGAGCAGTTCAAACAATGCCATCAAGGGTCACACAAGGAGCTGCAGATTTCGAAGAGACCCTTTTCTTTAGGTGCCATGTCTATTGTAGTTCTGGCCAGGGGAAGCCGATGAAGTTTGAGCCACGGCCCTTTTGGATATATGTGTTTGCAGTTGATGCTGAGGAGCTTGATTTTGGGAGAAATTCCGTGGATTTGAGTCAGCTGATTCAGGAGTCCATTGAGAAGAGCCATGAAGGTAAACGAATTCGCCAATGGGATAAGAGCTTTAGATTGTCAGGGAAGGCAAAAGGTGGGGAGCTTGTTCTGAAGTTGGGGTTTCAGATTATGGAGAAAGATGGAGGAGTTGGAATCTATAGTACTAGTCAAGCTTCCAGGACATTCTCGTCTTCTTTTGCAAGGAAGCAGTCGAAGACTTCTTTTAGTGTGCCTAGTCCAAAGCTATCAAGCAGAGAAGCATGGACTCCTTCACAAATAGGACAATCTGCTCATGATCTTCATGGAATCGATGAGCTGAATCTTGATGAACCCAACCCAGTTCCAGTATCCTCTTCTTCTTCGGCGCAGAAGCCAAAAGAACCAGAAGCACTGAAGGTAGAGGATCTTGATCTCCCAGACTTCGAAGTAGTGGATAAGGGAGTTGAATTCCAAGACAAGGAAGGGGAATATGGGGAAGCACAATCAGAAATATCCCTTGATGAAAAATCAGCAATATCGAGTGAGGTTGTGAAGGAAATTGTGCAAGACCAAGTGCATATGAAAAGATTGACAGAGCTGGATTCGATTGCTCAGCAGATTAAAGCTCTTGAATCTATGATGGGGAAAGAAAAAACTGTCGCCAAAGACGAAGAAATTGGATCACAAATATTGGAGGCAGATGAAGAAACAGTTACCAAGGAGTTCCTTCAAATGCTTGAGGATGAGGATATCATAAATGAGTATAAGCTCACCCAAAGTGATATTCCACCATTACAGCTTGAAGGAGCTGAGGATTCCACAGAGGCTGAATCCGCAGTATTCCTTCCTGATCTAGGAAAGAGCTTAGGCTGTGTGGTTCAAACCAGAGATGGAGGTTACTTGGCAGCCATGAATCCTCTGGATACTGTGGTAGCAAGGAAAGATACACCGAAACTTGCCATGCAAATATCAAAACCATTTGTTTTGCCATGGGACCAGTCCATGAGTGGCTTCGAATTGTTCCAAAGGATTGCAGCCATTGGACTCGATGAATTGAATTCCCAAATTTCAACTTTGACGAGCATGGATGACCTGATGGATAAAACCGCAGAACAGATAGCTTTCGAAGGCATTGCTTCCGCAATCATCCAAGGGAGGAACAAAGAAGGTGCAAGCTCGAGTGCTGCACGAACCATTGCTGCTGTGAAAACCATGGCAACTGCAATGAGTGCCGGTAGAAAAGAGAGGATTTCCACAGGGATTTGGAATGTGAATGAAAACCCGTTAACAGCAGAGGAGATTCTTGCATTCTCAATGCAGAAAATTGAGTCCATGGCTCTTGAAGCTTTGAAGATTCAGGCTGAAATGGCAGAGGAAGAAGCCCCATTTGATGTTTCGCCATTGATTGGCACCACAGCAACTGGAGGAAAAGTTCAAAATCAACCACTTGCTTCTTCAATATCGCTCGAGGACTGGATCAAAGACCACAGCTTGGTTGGTGTAGATGACTTATTACAACCAGGTGGTGGTCATACCGAGACAATCACACTGGCAGTGGTTGTTCAGCTGAGGGATCCGGTAAGGCGGTATGAGGCTGTAGGAGGCCCAATGATTGCAGTTATCTATGCAACAAGAGCTGATAACACCGGTGCAGTGGATAAGAATGAGGAGGAGGAGAAGAGATTCAAAGTGGCGAGTTTGCATGTTGGAGGGTTAAGGGTGAGGTCAAAAGGCGTTAGGAGAAATGCATGGGACAGTGAGAAGCAGAGACTAACTGCAATGCAGTGGCTGGTGGCTTATGGATTTGCAAAGGCAGGGAAGAAAGGCAAACATAGTGTGTCATCAAAAGGTCAAGATCTGTTATGGAGCATTTCATCAAGAGTAATGGGTGATATGTGGCTCAAATACATGAGAAACCCAGATGTAAAGTTTACCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

883

Amino Acids

97.17

Weight (kDa)

5.54

Isoelectric Point (pI)

46.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NT-C2 PF10358 143 - 291 2.1e-14 N-terminal C2 in EEIG1 and EHBP1 proteins
PMI1_PMIR1-2_C PF21745 555 - 703 6e-59 PMI1/PMIR1-2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000166)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33870 FvH4_5g04230 FvH4_5g04261 FvH4_5g04270 FvH4_5g04300 FvH4_5g04310 FvH4_5g04350 FvH4_6g12870 FvH4_6g12880 FvH4_6g12881 FvH4_6g12890 FvH4_6g12920 FvH4_6g12930
malus_domestica MD04G1137000.v1.1 MD04G1137200.v1.1 MD04G1137300.v1.1 MD12G1151200.v1.1 MD12G1151300.v1.1 MD12G1151400.v1.1 MD12G1151500.v1.1 MD12G1151600.v1.1 MD12G1152000.v1.1 MD15G1076100.v1.1 MD15G1076300.v1.1 MD15G1076400.v1.1
prunus_persica Prupe.1G429600_v2.0.a1 Prupe.1G429700_v2.0.a1 Prupe.5G116500_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.5G116800_v2.0.a1 Prupe.6G263000_v2.0.a1 Prupe.6G263100_v2.0.a1 Prupe.6G263200_v2.0.a1 Prupe.6G263300_v2.0.a1
pyrus_communis pycom04g12430 pycom04g12520 pycom04g12530 pycom04g12550 pycom12g14480 pycom12g14510 pycom15g07110 pycom15g07120
rosa_chinensis RchiOBHm_Chr3g0464611 RchiOBHm_Chr3g0464901 RchiOBHm_Chr3g0464911 RchiOBHm_Chr3g0464941 RchiOBHm_Chr3g0464971 RchiOBHm_Chr3g0464981 RchiOBHm_Chr3g0464991 RchiOBHm_Chr3g0465001 RchiOBHm_Chr3g0465011 RchiOBHm_Chr6g0308531 RchiOBHm_Chr6g0308541 RchiOBHm_Chr6g0308551 RchiOBHm_Chr6g0308581 RchiOBHm_Chr6g0308601 RchiOBHm_Chr6g0308641 RchiOBHm_Chr6g0308651 RchiOBHm_Chr6g0308661 RchiOBHm_Chr6g0308671 RchiOBHm_Chr7g0195221
rosa_laevigata RLG00000001258 RLG00000001261 RLG00000001262 RLG00000001263 RLG00000004137 RLG00000010630 RLG00000010631 RLG00000010633 RLG00000010634 RLG00000024661 RLG00000024662 RLG00000024663 RLG00000024664 RLG00000024665 RLG00000024666 RLG00000024681
rosa_multiflora Rmu_co8160990.1_g000001 Rmu_co8270195.1_g000001 Rmu_co8301123.1_g000001 Rmu_co8390765.1_g000001 Rmu_co8418605.1_g000001 Rmu_sc0000871.1_g000001 Rmu_sc0000871.1_g000007 Rmu_sc0000871.1_g000008 Rmu_sc0001161.1_g000016 Rmu_sc0001161.1_g000017 Rmu_sc0001161.1_g000018 Rmu_sc0002031.1_g000009 Rmu_sc0002381.1_g000010 Rmu_sc0004362.1_g000025 Rmu_sc0004362.1_g000026 Rmu_sc0013106.1_g000001 Rmu_sc0014534.1_g000001 Rmu_sc0014550.1_g000011 Rmu_sc0018858.1_g000002 Rmu_sc0019815.1_g000004 Rmu_sc0029154.1_g000002
rosa_roxburghii Rroxscaffold_3G00260650 Rroxscaffold_6G00415330 Rroxscaffold_6G00415340 Rroxscaffold_6G00415350 Rroxscaffold_6G00415360 Rroxscaffold_6G00415530 Rroxscaffold_7G00160020 Rroxscaffold_7G00160030 Rroxscaffold_7G00160040
rosa_rugosa Rorug03G0073200.1 Rorug03G0074600 Rorug03G0074600 Rorug03G0074700 Rorug03G0074800 Rorug06G0367700 Rorug07G0021800 Rorug07G0183500 Rorug07G0183600 Rorug07G0183700 Rorug07G0183800
rosa_samantha Rh3BG135400 Rh3BG137500 Rh3BG137700 Rh3BG137800 Rh3BG137900 Rh3BG138000 Rh3BG138100 Rh3BG138200 Rh3BG138300 Rh3BG284900 Rh3CG138100 Rh3CG140100 Rh3CG140300 Rh3CG140400 Rh3CG140500 Rh3CG140600 Rh3CG140700 Rh3CG148700 Rh3CG148800 Rh3CG148900 Rh3CG149000 Rh3DG137000 Rh3DG138900 Rh3DG139100 Rh3DG139200 Rh3DG139300 Rh3DG139400 Rh3DG139500 Rh3DG139600 Rh3DG139700 Rh3DG139800 Rh6AG477500 Rh6AG477800 Rh6AG478300 Rh6AG478500 Rh6AG478600 Rh6BG487800 Rh6CG492800 Rh6DG479000 Rh6DG479100 Rh7AG149000 Rh7BG150200 Rh7CG153800 Rh7DG150100
rosa_wichuraiana Rw3G011090 Rw3G011240 Rw3G011250 Rw3G011260 Rw3G011270 Rw3G011280 Rw3G011290 Rw3G011300 Rw3G011310 Rw6G041670 Rw6G041680 Rw6G041700 Rw6G041710 Rw7G012730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 919
AccB1I GGYRCC 2 cut(s) 609, 2120
AccB7I CCANNNNNTGG 3 cut(s) 2117, 2203, 2237
AccII CGCG 2 cut(s) 148, 194
AciI CCGC 9 cut(s) 5, 30, 146, 192, 194, 1545, 1818, 1851, 2296
AclWI GGATC 5 cut(s) 1143, 1399, 2195, 2279, 2292
AcoI YGGCCR 1 cut(s) 631
AcsI RAATTY 7 cut(s) 16, 40, 718, 780, 1178, 1768, 1776
AcuI CTGAAG 3 cut(s) 356, 863, 1145
AfaI GTAC 1 cut(s) 895
AfeI AGCGCT 1 cut(s) 75
AfiI CCNNNNNNNGG 5 cut(s) 1189, 1565, 2117, 2203, 2237
AflIII ACRYGT 1 cut(s) 102
AgeI ACCGGT 1 cut(s) 2357
AhlI ACTAGT 1 cut(s) 896
AjiI CACGTC 2 cut(s) 105, 272
AjnI CCWGG 4 cut(s) 57, 633, 908, 2230
AjuI GAANNNNNNNTTGG 2 cut(s) 1479, 1511
AloI GAACNNNNNNTCC 2 cut(s) 2127, 2159
Alw21I GWGCWC 1 cut(s) 469
Alw26I GTCTC 3 cut(s) 587, 2243, 2473
Alw44I GTGCAC 1 cut(s) 465
AlwI GGATC 5 cut(s) 1143, 1399, 2195, 2279, 2292
AlwNI CAGNNNCTG 4 cut(s) 58, 1538, 2132, 2500
Ama87I CYCGRG 2 cut(s) 1888, 2177
Aor51HI AGCGCT 1 cut(s) 75
AoxI GGCC 5 cut(s) 472, 493, 631, 662, 2314
ApaLI GTGCAC 1 cut(s) 465
ApeKI GCWGC 8 cut(s) 8, 188, 438, 578, 1616, 1745, 1895, 1910
ApoI RAATTY 7 cut(s) 16, 40, 718, 780, 1178, 1768, 1776
AseI ATTAAT 1 cut(s) 321
AsiGI ACCGGT 1 cut(s) 2357
Asp700I GAANNNNTTC 1 cut(s) 2393
AspLEI GCGC 3 cut(s) 76, 267, 1099
AspS9I GGNCC 3 cut(s) 663, 1705, 2315
AsuHPI GGTGA 3 cut(s) 1474, 2443, 2612
AsuII TTCGAA 4 cut(s) 588, 1155, 1725, 1836
AvaI CYCGRG 2 cut(s) 1888, 2177
AvaII GGWCC 1 cut(s) 1705
BaeGI GKGCMC 1 cut(s) 469
BaeI ACNNNNGTAYC 2 cut(s) 1626, 1659
BalI TGGCCA 1 cut(s) 633
BamHI GGATCC 1 cut(s) 2284
BanI GGYRCC 2 cut(s) 609, 2120
BbsI GAAGAC 3 cut(s) 247, 915, 953
Bbv12I GWGCWC 1 cut(s) 469
BbvCI CCTCAGC 3 cut(s) 696, 1521, 2279
BbvI GCAGC 8 cut(s) 20, 175, 425, 565, 1628, 1757, 1882, 1897
BccI CCATC 6 cut(s) 178, 565, 866, 1345, 1595, 1801
BceAI ACGGC 1 cut(s) 677
BcgI CGANNNNNNTGC 2 cut(s) 1826, 1860
BciT130I CCWGG 4 cut(s) 59, 635, 910, 2232
BciVI GTATCC 2 cut(s) 1090, 1627
BcoDI GTCTC 3 cut(s) 587, 2243, 2473
BcuI ACTAGT 1 cut(s) 896
BfaI CTAG 4 cut(s) 68, 897, 966, 1565
BfmI CTRYAG 3 cut(s) 579, 889, 2307
BfoI RGCGCY 2 cut(s) 77, 268
BfuI GTATCC 2 cut(s) 1090, 1627
BglII AGATCT 1 cut(s) 2566
BlpI GCTNAGC 1 cut(s) 1323
BmcAI AGTACT 1 cut(s) 895
Bme1390I CCNGG 4 cut(s) 59, 635, 910, 2232
Bme18I GGWCC 1 cut(s) 1705
BmeT110I CYCGRG 2 cut(s) 1888, 2177
BmgBI CACGTC 2 cut(s) 105, 272
BmgT120I GGNCC 3 cut(s) 663, 1705, 2315
BmiI GGNNCC 4 cut(s) 611, 1706, 2122, 2286
BmrFI CCNGG 4 cut(s) 59, 635, 910, 2232
BmrI ACTGGG 1 cut(s) 1064
BmsI GCATC 1 cut(s) 682
BmuI ACTGGG 1 cut(s) 1064
BoxI GACNNNNGTC 1 cut(s) 247
BpiI GAAGAC 3 cut(s) 247, 915, 953
BpmI CTGGAG 2 cut(s) 350, 2154
Bpu10I CCTNAGC 4 cut(s) 696, 1521, 1576, 2279
Bpu1102I GCTNAGC 1 cut(s) 1323
Bpu14I TTCGAA 4 cut(s) 588, 1155, 1725, 1836
BpuEI CTTGAG 1 cut(s) 1469
Bsa29I ATCGAT 1 cut(s) 1041
BsaBI GATNNNNATC 1 cut(s) 1140
BsaI GGTCTC 1 cut(s) 587
BsaWI WCCGGW 2 cut(s) 2287, 2357
BsaXI ACNNNNNCTCC 2 cut(s) 2127, 2157
Bsc4I CCNNNNNNNGG 5 cut(s) 1189, 1565, 2117, 2203, 2237
Bse118I RCCGGY 2 cut(s) 1943, 2357
Bse1I ACTGG 6 cut(s) 1070, 1076, 1708, 2137, 2189, 2265
Bse3DI GCAATG 5 cut(s) 349, 1842, 1905, 1941, 2496
Bse8I GATNNNNATC 1 cut(s) 1140
BseBI CCWGG 4 cut(s) 59, 635, 910, 2232
BseCI ATCGAT 1 cut(s) 1041
BseGI GGATG 3 cut(s) 1459, 1804, 1857
BseJI GATNNNNATC 1 cut(s) 1140
BseLI CCNNNNNNNGG 5 cut(s) 1189, 1565, 2117, 2203, 2237
BseMI GCAATG 5 cut(s) 349, 1842, 1905, 1941, 2496
BseMII CTCAG 7 cut(s) 65, 91, 227, 687, 1337, 1512, 2270
BseNI ACTGG 6 cut(s) 1070, 1076, 1708, 2137, 2189, 2265
BseRI GAGGAG 8 cut(s) 221, 365, 713, 891, 2021, 2393, 2396, 2399
BseSI GKGCMC 1 cut(s) 469
BseXI GCAGC 8 cut(s) 20, 175, 425, 565, 1628, 1757, 1882, 1897
BsgI GTGCAG 2 cut(s) 1881, 2382
Bsh1236I CGCG 2 cut(s) 148, 194
BshFI GGCC 5 cut(s) 474, 495, 633, 664, 2316
BshNI GGYRCC 2 cut(s) 609, 2120
BshTI ACCGGT 1 cut(s) 2357
BshVI ATCGAT 1 cut(s) 1041
BsiHKAI GWGCWC 1 cut(s) 469
BsiHKCI CYCGRG 2 cut(s) 1888, 2177
BsiSI CCGG 3 cut(s) 1944, 2288, 2358
BslFI GGGAC 3 cut(s) 322, 1718, 2477
BslI CCNNNNNNNGG 5 cut(s) 1189, 1565, 2117, 2203, 2237
BsmAI GTCTC 3 cut(s) 587, 2243, 2473
BsmFI GGGAC 3 cut(s) 322, 1718, 2477
BsmI GAATGC 2 cut(s) 429, 2018
BsnI GGCC 5 cut(s) 474, 495, 633, 664, 2316
Bso31I GGTCTC 1 cut(s) 587
BsoBI CYCGRG 2 cut(s) 1888, 2177
Bsp119I TTCGAA 4 cut(s) 588, 1155, 1725, 1836
Bsp1286I GDGCHC 1 cut(s) 469
Bsp1720I GCTNAGC 1 cut(s) 1323
Bsp19I CCATGG 3 cut(s) 1700, 1923, 2043
BspACI CCGC 9 cut(s) 5, 30, 146, 192, 194, 1545, 1818, 1851, 2296
BspANI GGCC 5 cut(s) 474, 495, 633, 664, 2316
BspCNI CTCAG 7 cut(s) 64, 90, 228, 688, 1336, 1513, 2271
BspDI ATCGAT 1 cut(s) 1041
BspFNI CGCG 2 cut(s) 148, 194
BspHI TCATGA 1 cut(s) 1024
BspLI GGNNCC 4 cut(s) 611, 1706, 2122, 2286
BspMAI CTGCAG 1 cut(s) 583
BspPI GGATC 5 cut(s) 1143, 1399, 2195, 2279, 2292
BspQI GCTCTTC 4 cut(s) 57, 147, 332, 755
BspT104I TTCGAA 4 cut(s) 588, 1155, 1725, 1836
BspT107I GGYRCC 2 cut(s) 609, 2120
BspTNI GGTCTC 1 cut(s) 587
BsrDI GCAATG 5 cut(s) 349, 1842, 1905, 1941, 2496
BsrFI RCCGGY 2 cut(s) 1943, 2357
BsrI ACTGG 6 cut(s) 1070, 1076, 1708, 2137, 2189, 2265
BssAI RCCGGY 2 cut(s) 1943, 2357
BssT1I CCWWGG 6 cut(s) 260, 1428, 1700, 1861, 1923, 2043
Bst2UI CCWGG 4 cut(s) 59, 635, 910, 2232
Bst4CI ACNGT 4 cut(s) 1369, 1423, 1639, 2468
Bst6I CTCTTC 7 cut(s) 57, 147, 332, 585, 755, 1090, 2384
BstAPI GCANNNNNTGC 2 cut(s) 692, 1940
BstBI TTCGAA 4 cut(s) 588, 1155, 1725, 1836
BstC8I GCNNGC 1 cut(s) 1885
BstDEI CTNAG 8 cut(s) 51, 77, 236, 696, 1323, 1521, 1576, 2279
BstDSI CCRYGG 6 cut(s) 192, 659, 723, 1700, 1923, 2043
BstENI CCTNNNNNAGG 1 cut(s) 1563
BstF5I GGATG 3 cut(s) 1459, 1804, 1857
BstFNI CGCG 2 cut(s) 148, 194
BstH2I RGCGCY 2 cut(s) 77, 268
BstHHI GCGC 3 cut(s) 76, 267, 1099
BstMAI GTCTC 3 cut(s) 587, 2243, 2473
BstMWI GCNNNNNNNGC 9 cut(s) 73, 137, 194, 692, 1544, 1940, 2054, 2078, 2345
BstNI CCWGG 4 cut(s) 59, 635, 910, 2232
BstNSI RCATGY 1 cut(s) 2417
BstPAI GACNNNNGTC 1 cut(s) 247
BstSCI CCNGG 4 cut(s) 57, 633, 908, 2230
BstSFI CTRYAG 3 cut(s) 579, 889, 2307
BstSLI GKGCMC 1 cut(s) 469
BstUI CGCG 2 cut(s) 148, 194
BstV1I GCAGC 8 cut(s) 20, 175, 425, 565, 1628, 1757, 1882, 1897
BstV2I GAAGAC 3 cut(s) 247, 915, 953
BstX2I RGATCY 3 cut(s) 1135, 2284, 2566
BstYI RGATCY 3 cut(s) 1135, 2284, 2566
Bsu15I ATCGAT 1 cut(s) 1041
BsuI GTATCC 2 cut(s) 1090, 1627
BsuRI GGCC 5 cut(s) 474, 495, 633, 664, 2316
BsuTUI ATCGAT 1 cut(s) 1041
BtgI CCRYGG 6 cut(s) 192, 659, 723, 1700, 1923, 2043
BtrI CACGTC 2 cut(s) 105, 272
BtsCI GGATG 3 cut(s) 1459, 1804, 1857
BtsI GCAGTG 3 cut(s) 2271, 2370, 2501
BtsIMutI CAGTG 9 cut(s) 85, 233, 469, 1121, 2258, 2271, 2370, 2473, 2501
Cac8I GCNNGC 1 cut(s) 1885
CaiI CAGNNNCTG 4 cut(s) 58, 1538, 2132, 2500
CciI TCATGA 1 cut(s) 1024
CfoI GCGC 3 cut(s) 76, 267, 1099
Cfr10I RCCGGY 2 cut(s) 1943, 2357
Cfr13I GGNCC 3 cut(s) 663, 1705, 2315
Cfr42I CCGCGG 1 cut(s) 195
ClaI ATCGAT 1 cut(s) 1041
CsiI ACCWGGT 1 cut(s) 2230
Csp6I GTAC 1 cut(s) 894
CspAI ACCGGT 1 cut(s) 2357
CviQI GTAC 1 cut(s) 894
DdeI CTNAG 8 cut(s) 51, 77, 236, 696, 1323, 1521, 1576, 2279
DrdI GACNNNNNNGTC 1 cut(s) 919
DseDI GACNNNNNNGTC 1 cut(s) 919
EaeI YGGCCR 1 cut(s) 631
Eam1104I CTCTTC 7 cut(s) 57, 147, 332, 585, 755, 1090, 2384
EarI CTCTTC 7 cut(s) 57, 147, 332, 585, 755, 1090, 2384
EciI GGCGGA 1 cut(s) 45
Eco130I CCWWGG 6 cut(s) 260, 1428, 1700, 1861, 1923, 2043
Eco147I AGGCCT 1 cut(s) 474
Eco31I GGTCTC 1 cut(s) 587
Eco32I GATATC 1 cut(s) 1462
Eco47I GGWCC 1 cut(s) 1705
Eco47III AGCGCT 1 cut(s) 75
Eco57I CTGAAG 3 cut(s) 356, 863, 1145
Eco88I CYCGRG 2 cut(s) 1888, 2177
EcoNI CCTNNNNNAGG 1 cut(s) 1563
EcoRI GAATTC 5 cut(s) 16, 40, 780, 1178, 1768
EcoRII CCWGG 4 cut(s) 57, 633, 908, 2230
EcoRV GATATC 1 cut(s) 1462
EcoT14I CCWWGG 6 cut(s) 260, 1428, 1700, 1861, 1923, 2043
EcoT22I ATGCAT 1 cut(s) 2461
ErhI CCWWGG 6 cut(s) 260, 1428, 1700, 1861, 1923, 2043
FalI AAGNNNNNCTT 2 cut(s) 582, 614
FaqI GGGAC 3 cut(s) 322, 1718, 2477
FauNDI CATATG 1 cut(s) 1290
FokI GGATG 3 cut(s) 1466, 1811, 1844
FspBI CTAG 4 cut(s) 68, 897, 966, 1565
GlaI GCGC 3 cut(s) 75, 266, 1098
GsuI CTGGAG 2 cut(s) 350, 2154
HaeII RGCGCY 2 cut(s) 77, 268
HaeIII GGCC 5 cut(s) 474, 495, 633, 664, 2316
HapII CCGG 3 cut(s) 1944, 2288, 2358
HhaI GCGC 3 cut(s) 76, 267, 1099
Hin6I GCGC 3 cut(s) 74, 265, 1097
HinP1I GCGC 3 cut(s) 74, 265, 1097
HincII GTYRAC 1 cut(s) 1998
HindII GTYRAC 1 cut(s) 1998
HindIII AAGCTT 2 cut(s) 903, 2055
HpaI GTTAAC 1 cut(s) 1998
HpaII CCGG 3 cut(s) 1944, 2288, 2358
HphI GGTGA 3 cut(s) 1474, 2443, 2612
Hpy166II GTNNAC 5 cut(s) 108, 467, 776, 1998, 2643
Hpy188I TCNGA 3 cut(s) 843, 858, 1219
Hpy8I GTNNAC 5 cut(s) 108, 467, 776, 1998, 2643
HpyCH4III ACNGT 4 cut(s) 1369, 1423, 1639, 2468
HpyCH4IV ACGT 3 cut(s) 104, 244, 271
HpyF10VI GCNNNNNNNGC 9 cut(s) 73, 137, 194, 692, 1544, 1940, 2054, 2078, 2345
HpyF3I CTNAG 8 cut(s) 51, 77, 236, 696, 1323, 1521, 1576, 2279
HpySE526I ACGT 3 cut(s) 104, 244, 271
HspAI GCGC 3 cut(s) 74, 265, 1097
KspAI GTTAAC 1 cut(s) 1998
KspI CCGCGG 1 cut(s) 195
LguI GCTCTTC 4 cut(s) 57, 147, 332, 755
LmnI GCTCC 8 cut(s) 60, 331, 539, 575, 700, 832, 1517, 2577
Lsp1109I GCAGC 8 cut(s) 20, 175, 425, 565, 1628, 1757, 1882, 1897
LweI GCATC 1 cut(s) 682
MabI ACCWGGT 1 cut(s) 2230
MaeI CTAG 4 cut(s) 68, 897, 966, 1565
MaeII ACGT 3 cut(s) 104, 244, 271
MaeIII GTNAC 4 cut(s) 84, 565, 1423, 1607
MfeI CAATTG 1 cut(s) 2647
MflI RGATCY 3 cut(s) 1135, 2284, 2566
MhlI GDGCHC 1 cut(s) 469
MlsI TGGCCA 1 cut(s) 633
MluNI TGGCCA 1 cut(s) 633
MlyI GAGTC 6 cut(s) 92, 742, 758, 991, 1749, 2048
MmeI TCCRAC 3 cut(s) 69, 862, 2398
Mox20I TGGCCA 1 cut(s) 633
Mph1103I ATGCAT 1 cut(s) 2461
MroXI GAANNNNTTC 1 cut(s) 2393
MscI TGGCCA 1 cut(s) 633
MseI TTAA 4 cut(s) 321, 1332, 1997, 2426
MslI CAYNNNNRTG 1 cut(s) 422
Msp20I TGGCCA 1 cut(s) 633
MspA1I CMGCKG 5 cut(s) 194, 328, 438, 739, 2278
MspI CCGG 3 cut(s) 1944, 2288, 2358
MspR9I CCNGG 4 cut(s) 59, 635, 910, 2232
MunI CAATTG 1 cut(s) 2647
Mva1269I GAATGC 2 cut(s) 429, 2018
MvaI CCWGG 4 cut(s) 59, 635, 910, 2232
MvnI CGCG 2 cut(s) 148, 194
MwoI GCNNNNNNNGC 9 cut(s) 73, 137, 194, 692, 1544, 1940, 2054, 2078, 2345
NcoI CCATGG 3 cut(s) 1700, 1923, 2043
NdeI CATATG 1 cut(s) 1290
NlaIV GGNNCC 4 cut(s) 611, 1706, 2122, 2286
NmuCI GTSAC 2 cut(s) 84, 565
NsiI ATGCAT 1 cut(s) 2461
NspI RCATGY 1 cut(s) 2417
NspV TTCGAA 4 cut(s) 588, 1155, 1725, 1836
PaeR7I CTCGAG 2 cut(s) 1888, 2177
PagI TCATGA 1 cut(s) 1024
PceI AGGCCT 1 cut(s) 474
PciSI GCTCTTC 4 cut(s) 57, 147, 332, 755
PcsI WCGNNNNNNNCGW 1 cut(s) 1377
PctI GAATGC 2 cut(s) 429, 2018
PdmI GAANNNNTTC 1 cut(s) 2393
PflMI CCANNNNNTGG 3 cut(s) 2117, 2203, 2237
PfoI TCCNGGA 2 cut(s) 57, 908
PinAI ACCGGT 1 cut(s) 2357
PleI GAGTC 6 cut(s) 91, 741, 757, 991, 1749, 2047
PpsI GAGTC 6 cut(s) 91, 741, 757, 991, 1749, 2047
PshAI GACNNNNGTC 1 cut(s) 247
PshBI ATTAAT 1 cut(s) 321
Psp6I CCWGG 4 cut(s) 57, 633, 908, 2230
PspGI CCWGG 4 cut(s) 57, 633, 908, 2230
PspN4I GGNNCC 4 cut(s) 611, 1706, 2122, 2286
PspPI GGNCC 3 cut(s) 663, 1705, 2315
PspXI VCTCGAGB 2 cut(s) 1888, 2177
PstI CTGCAG 1 cut(s) 583
PstNI CAGNNNCTG 4 cut(s) 58, 1538, 2132, 2500
PsuI RGATCY 3 cut(s) 1135, 2284, 2566
PvuII CAGCTG 4 cut(s) 328, 438, 739, 2278
RsaI GTAC 1 cut(s) 895
RsaNI GTAC 1 cut(s) 894
RseI CAYNNNNRTG 1 cut(s) 422
SacII CCGCGG 1 cut(s) 195
SapI GCTCTTC 4 cut(s) 57, 147, 332, 755
SaqAI TTAA 4 cut(s) 321, 1332, 1997, 2426
Sau96I GGNCC 3 cut(s) 663, 1705, 2315
ScaI AGTACT 1 cut(s) 895
SchI GAGTC 6 cut(s) 92, 742, 758, 991, 1749, 2048
ScrFI CCNGG 4 cut(s) 59, 635, 910, 2232
SduI GDGCHC 1 cut(s) 469
SexAI ACCWGGT 1 cut(s) 2230
SfaNI GCATC 1 cut(s) 682
SfcI CTRYAG 3 cut(s) 579, 889, 2307
Sfr274I CTCGAG 2 cut(s) 1888, 2177
Sfr303I CCGCGG 1 cut(s) 195
SfuI TTCGAA 4 cut(s) 588, 1155, 1725, 1836
SgrAI CRCCGGYG 1 cut(s) 2357
SgrBI CCGCGG 1 cut(s) 195
SinI GGWCC 1 cut(s) 1705
SlaI CTCGAG 2 cut(s) 1888, 2177
SmiMI CAYNNNNRTG 1 cut(s) 422
SmlI CTYRAG 3 cut(s) 1448, 1888, 2177
SmoI CTYRAG 3 cut(s) 1448, 1888, 2177
SpeI ACTAGT 1 cut(s) 896
SseBI AGGCCT 1 cut(s) 474
SsiI CCGC 9 cut(s) 5, 30, 146, 192, 194, 1545, 1818, 1851, 2296
SspI AATATT 1 cut(s) 1401
SspMI CTAG 4 cut(s) 68, 897, 966, 1565
StuI AGGCCT 1 cut(s) 474
StyD4I CCNGG 4 cut(s) 57, 633, 908, 2230
StyI CCWWGG 6 cut(s) 260, 1428, 1700, 1861, 1923, 2043
TaaI ACNGT 4 cut(s) 1369, 1423, 1639, 2468
TaiI ACGT 3 cut(s) 107, 247, 274
TatI WGTACW 1 cut(s) 893
TauI GCSGC 3 cut(s) 8, 194, 197
Tru1I TTAA 4 cut(s) 321, 1332, 1997, 2426
Tru9I TTAA 4 cut(s) 321, 1332, 1997, 2426
TscAI CASTG 9 cut(s) 85, 240, 469, 1128, 2265, 2271, 2370, 2473, 2501
TseFI GTSAC 2 cut(s) 84, 565
TseI GCWGC 8 cut(s) 8, 188, 438, 578, 1616, 1745, 1895, 1910
Tsp45I GTSAC 2 cut(s) 84, 565
TspGWI ACGGA 2 cut(s) 552, 712
TspRI CASTG 9 cut(s) 85, 240, 469, 1128, 2265, 2271, 2370, 2473, 2501
Van91I CCANNNNNTGG 3 cut(s) 2117, 2203, 2237
VneI GTGCAC 1 cut(s) 465
VpaK11BI GGWCC 1 cut(s) 1705
VspI ATTAAT 1 cut(s) 321
XagI CCTNNNNNAGG 1 cut(s) 1563
XapI RAATTY 7 cut(s) 16, 40, 718, 780, 1178, 1768, 1776
XceI RCATGY 1 cut(s) 2417
XcmI CCANNNNNNNNNTGG 4 cut(s) 666, 1627, 1715, 2204
XhoI CTCGAG 2 cut(s) 1888, 2177
XmnI GAANNNNTTC 1 cut(s) 2393
XspI CTAG 4 cut(s) 68, 897, 966, 1565
ZrmI AGTACT 1 cut(s) 895
Zsp2I ATGCAT 1 cut(s) 2461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.